lyve1a


Basic Information

Item Value
gene id lyve1a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6618241 ~ 6622623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930316.2
GGGAGAGCCGCACTCTATAACTCCTGGACGCACACTCATCAGTCCACGACTCATCTCAGAGCTCTGAGAGAGGACAGACTCATCAACCATGGCACAAACTGGGATGCTGTTGCTACTCTTGGCTCATTTTGTCACATCAGCTCTGCTTATTGATATCAGACAGATCAGAGTTTACCCCAAACATGGCAGCTGTGTCCGGCGTGTTCCACGCATCGCTCTCCAGTGGCTATGCCTTCAACGCATCTGTAGCCAGAGATGTGTGTGACCAGCTGGGTGTGGCCATAGCAGACAAGGCGCAGGTGGAAAAAGCACTCGCACATGGCTTCGAGACCTGCAGGTTCGGCTGGATCGATGAACAAGTCACTGTTATTCCCAGAATTCAACCCAAAGACTCCTGTGGTCAAGGCAGAGTTGGGATTATTACTTGGCGCAGTGCTCTCAGCTCTCTATTTGATGTCTTCTGTTTCAATTTAACAGATTATGAAGCTCACGTGAACACAGTGCACGAAAATCCGAGCACCACTGTCACGCCTACAGCTCACACATCTGGAGCTCATCTGAAACTGGCAAAAACGACTCGTTCAGCATCTCGGGATGATCTGCAGTCCACTTCCTCCAGTCCTCCTGAATCTGTGGACTCCTCGGCTGGGAATGACACGCCTGAATCGCAGGCCTTTAGCTTCACAAGCCCTACCATTGCAGTTGGCCTGATTGCTATGCTCACAACCGTCTTCGCTTTCCTGCTGCTCGCTGTGGCTGCTGTCTGTTACTTCAAAAAGAACAGTGTGGGCCGGTGGAACAAAAGTCAGCAGAAAGAGAACATAGAGACTGAAATTTGTGGGAAAACTGGAAAGGAGTCTCAGGCTGAGGTGAAAAACCAACACAAAACAACGTCTAACACAAACGATGTCAGCGTGACTATCAAGCCGGAGAGCGAGAACGGAGAGCCGTCTTAACCAGCCATAACAGTCAGACCATCGGCCTGAGCTCGACATCTGCTGGAAAGGCATCAtgcaaaagtatttatttatttgtttaactgaacaaacatttttcatattcCCTTCTGCTTTGATGATTTGTATGTGGTGTTTTTccttttgtattattattttccttttacggtgatattttatatttgtacagTAGACCCACGTTTGTGAATATGGTTGAGACagaaatgtggttttatttctttttgaataaatatgacttttttGGCTGCCAGTGGAgatacagtcaactccagaattattgtcacacttaaattgaataaaataaacatcacgaTTCTATAAACATCATGAGTCTAGTTTCCACTCAGGCAATAGGAGAAAATGATTACCTTTCCTGCAAAAATcattctctttttaattttttttttttactaagacCTGTGTTGACATCAGTGTTTTGTGATATCCAATCTCAGACTCTGAATCTGAAACTTGTAGTGGGAATTGAAACGAgtgtacacatgcacaaacGTAACATtacaaatccacacaaaaatgttCTGCACATAAAAGTGTCTTCAAGTGTGTCATgcaggtgccaatacttttgaaaccagtgtttttgCAGGAAACATTTGGTCTACTTAAGAAAACATGTTTGAagtaataatgttaaaataaatacaccattCCAATACATTTAAGCACTCTATATCAGTCACTGCATTTGTTGTGCTTTCAGATTGATCTTTATGAAGGgagccaataattttggagttgaCTGCATGCAACTGGCAGTGATCCAGCTTCAAAAGTGTCAGATGTCtcttttcagacttttttttctttctctcctcctagaaaacaatttatttatcaCTATAACAATATAAAgatacatttgctttttttctctccatacTATTCAGGTATTAATAAAGAATAACGTgctatatatctttatatacagtatgtgcaatattgtaggaattctgagttaaATGGAAGAAAAGGCCACTAGATGCAACGGAAAAGCTTTCAGGGTGTTGGATGAACAGACAGCACATTAGCTACAAAGCTACATTGTTTTCAAGTTCTTATAGTATCTTATACATTCAATAAATGAGGTCCAGTGTT

Function

NR:

description
PREDICTED: lymphatic vessel endothelial hyaluronic acid receptor 1-like

GO: NA

KEGG:

id description
K19012 LYVE1; lymphatic vessel endothelial hyaluronan receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930316.2 True 2093 mRNA 0.41 6 6618241 6622623

Neighbor

gene id symbol gene type direction distance location
mrvi1 mrvi1 coding upstream 3876 6578994 ~ 6614365 (+)
LOC113536770 mrvi1 coding upstream 39246 6570292 ~ 6578995 (+)
eif4g2a eif4g2,eif4g2a,LOC108433007,LOC107715453,LOC107738366,LOC107670782 coding upstream 63747 6544175 ~ 6554494 (+)
slc29a1b LOC108271058 coding upstream 392408 6212196 ~ 6225833 (+)
vipb LOC108270647 coding upstream 412536 6201849 ~ 6205705 (+)
sbf2 sbf2,LOC106587205,LOC106562098 coding downstream 33861 6656484 ~ 6782199 (+)
LOC113536733 LOC108270651,LOC108270616 coding downstream 198181 6820804 ~ 6822113 (+)
traf3ip2b LOC108270566 coding downstream 200784 6823407 ~ 6831740 (+)
LOC113536670 LOC108270652,LOC108443884 coding downstream 228817 6851440 ~ 6853641 (+)
LOC113536389 gnb4,LOC108270972,LOC108443894,LOC108440866 coding downstream 267565 6890188 ~ 6900065 (+)
G176964 NA non-coding upstream 63234 6554594 ~ 6555007 (+)
LOC117598391 NA non-coding upstream 518214 6094203 ~ 6100027 (+)
G176746 NA non-coding upstream 542814 6070947 ~ 6075427 (+)
G176700 NA non-coding upstream 666086 5951814 ~ 5952155 (+)
G176608 NA non-coding upstream 760999 5855525 ~ 5857242 (+)
G177159 NA non-coding downstream 236681 6859304 ~ 6860230 (+)
LOC113536609 NA non-coding downstream 241202 6863825 ~ 6875047 (+)
G177165 NA non-coding downstream 262955 6885578 ~ 6886403 (+)
G177141 NA non-coding downstream 282346 6904969 ~ 6907752 (+)
G177180 NA non-coding downstream 331020 6953643 ~ 6960207 (+)
G175977 pacsin3 other upstream 1957105 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 1973043 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2318874 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 2959951 3647355 ~ 3658290 (+)
pth1b NA other upstream 2971126 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 499762 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 645208 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 1620732 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 1622329 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 1625393 8248016 ~ 8248088 (+)

Expression


Co-expression Network