irf2bp2b (irf2bp2)


Basic Information

Item Value
gene id irf2bp2b
gene name irf2bp2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7434319 ~ 7437490 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930318.2
TGCCGGGGCGACCGGAATGCGGAATTATGGGCTGGCGCTCCAGGCAATATTTTGGCTTACGGGTCATTGGTGCAAGTTTTAACAACGCTGGCGTTTGCACGATCCAAGCCAAGATGTGTGGATTGCATAACAATGCGCAAATCGATCCAACAGCCCAGCTGGAGCGCCGAGGGCGAGGGGGAAAGCGCGGCGCATGCGCAGAAGGCGGTTGTCGAAGAATCGAAGTAAATAGAATCGGAGCTGAAACGCTGGAAGCTGAACTTTAGTGACGTCATCGCGCCACACAGAGCTGGCTGGCGGAGTAGTAGTGCGCGAGATAGATAGAGGCGCGCTGTAGTAAAGCACGCACTGCCATGAACTTCGGAGTGTAAACTTCGCTGTTTTTGTCGCCGACGGACTGGTGCGGGAAACTACAacgattttttttctgcttttttttctcttaacaGAACTAAACACAACAGACGGGCGTTTGGAGAATTAGTCGTATTcgttcttttcttcttccttcccCAAAGCCATGTCCTCCGCGGCGGTCGCTGCCTCGCGCAGGCAGTCGTGCTATCTGTGCGACTTGCCCCGCATGCCGTGGGCGATGATTTGGGATTTCACGGAGCCAGTGTGCAGGGGGTGCGTGAACTACGAGGGCGCTGATCGCATCGAGTTCGTGATCGAGACCGCGCGGCAGCTCAAGAGGGCTCACGGCTTCCAGGAAGGCAGGTCGCATGGAGCGGGCAAGTCGGCCAAGGACATTCAGTCCGTGAACCACGCGGCTGGAGACGGTGGCTCGCGGGCGCCGCCGCCGCAGACCCTGGACCGCTACTCCCTCTCTTCGGACAGACCGCCCCGCCTCGGGCCCGAGTATCAGCCCGGCGCCAGGCAGGCGAACGGCCTCCCCGTTCCGAATGGATTCCCCAAACCTGACGAGCCGCCGGAGCTGAACCGCCAGAGCCCCAATCCTCGCAGGGCGAGCGCGGTCCCGCCGAGCCTCGTGCCTTTGGTGAACATTAACGGGGCTCTGCCAGTGAACGCGCTCAACGGCCGGCCACCTCCCATGGGGATCCCGGGCGCGTTAACGGTCGAGCACGGTGGGAAGAGGTCGGACGACGCGAAGGACAAACACCGACCGGACAGCGTGTCTGACCTGGGCGAGAGTCACAAGCGCGACGACTGGATAGGAAAAGGCAAGACGGTCCGCGACCTCATGGCCCTGCAAAATCCGGAAGGCAGGTTCAAGAAGGAGCACGCAGCCATGCAGCACCGAATGGGATACGAGACCTCTGCCTCGTCAAAAACAGATCGAGGCAAGCAACCTCGAAGCAGCATGAAGAGGAAAGCCTCCCCAGAGCCTGAGGGTGAGGGCGCAGGCACTAAGCTGAACGGTGACGGGCTGCCTTGGTCTTCCTGCACATCTGAAGTGCCAAAGCTTCCTGCTGCAGCTCTGCCAGGCTACACCACCGCACCTCCTTCCACCATCTCTCCACACCCACGCACCACGCCGCCTGAGGCTGCTTTGACTGTGCACAACGGCCAGTCTCCCATGGCTGCCCTCATCCAGGCAGCGGACAACGCTGGCAGCGCGGGCACCGGCTCGCCCAAAGACGCCAACCAGGTGCACTCCACTACAGCAAGGAGGAACAGCGGCAGCCCGCTCTCTCCCTCCTCAGCCGGCCAGCGGCGGCTCACCCAAAGGGACGTGATGGGCGCAGGGGTGGCGGGCACGGCTGCTGCAGGCACAGGTGCCAGCCATGTCCCAGGTGTAGTAGACCCTCAGGGTGGTCACCCACAGAGCATTCCGGACTCGTCGGTGCCTCCTGGCAGCGTTCCCCTGTGCTGCACCTTGTGTCATGAGCGGCTTGAGGACACACATTTCGTGCAGTGCCCATCAGTGCCCTCACACAAGTTCTGCTTCCCCTGCTCACGCGAGAGCATCAAACAGCAGGGTGCCACGGGCGAAGTGTACTGCCCCAGCGGCGAGAAATGCCCACTGGTGGGCTCCAACGTGCCCTGGGCATTCATGCAAGGGGAAATAGCGACCATCTTGGCCGGAGACGTGAAagtaaaaaaggagagagaccCTTGATTTTTCCACACTAttctgttttcctcttttttttgttacatttgttttttcttgcaaAAGATTCAAAAACGACaaatgacatacacacacacacatacgatTTCagatgactataaataaatcaaattgcATACCATCCAAGCAGAAATTATGGGACATGTACATATGGACTCAAGGGAAGTGTACACTTCATAAACATGGCTGTATAAATTTTTTTGATTTTCCCTTTTTGAATACattgtttctatattttttGAAGATGAAAAGGTATGTACACATTCTAACAGACTACTTTCACCTTT

Function

symbol description
irf2bp2 Enables transcription corepressor activity. Involved in immature B cell differentiation. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in nucleoplasm. Implicated in common variable immunodeficiency.

NR:

description
interferon regulatory factor 2-binding protein 2-B-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22383 IRF2BP; interferon regulatory factor 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930318.2 True 2385 mRNA 0.57 3 7434319 7437490

Neighbor

gene id symbol gene type direction distance location
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding downstream 79989 7296707 ~ 7354330 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding downstream 181726 7248348 ~ 7252593 (-)
si:dkey-93h22.8 LOC108270890 coding downstream 231455 7192255 ~ 7202864 (-)
ogal LOC108270888,LOC108412751 coding downstream 243485 7180208 ~ 7190834 (-)
tk1 tk1,LOC107713239,LOC107726782 coding downstream 279610 7150679 ~ 7154709 (-)
rbm34 rbm34 coding upstream 55011 7492501 ~ 7500900 (-)
nid1a nid1 coding upstream 77757 7515247 ~ 7547820 (-)
ero1b ero1b coding upstream 126890 7564380 ~ 7577840 (-)
mctp2b LOC108271124,LOC108428479 coding upstream 157525 7595015 ~ 7623473 (-)
LOC113536417 LOC108271125 coding upstream 188006 7625496 ~ 7656954 (-)
G177539 NA non-coding downstream 11043 7423023 ~ 7423276 (-)
LOC113536470 NA non-coding downstream 17281 7415941 ~ 7417038 (-)
G177491 NA non-coding downstream 20134 7413967 ~ 7414185 (-)
G177469 NA non-coding downstream 59084 7375027 ~ 7375235 (-)
G177459 NA non-coding downstream 141149 7292917 ~ 7293170 (-)
G177547 NA non-coding upstream 2689 7440179 ~ 7440388 (-)
G177550 NA non-coding upstream 4401 7441891 ~ 7442395 (-)
G177559 NA non-coding upstream 33484 7470974 ~ 7471210 (-)
G177562 NA non-coding upstream 41668 7479158 ~ 7479388 (-)
G177682 NA non-coding upstream 71361 7508851 ~ 7509188 (-)
LOC113536608 LOC108270551 other downstream 572971 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1726015 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2237501 5139610 ~ 5196818 (-)
G176307 NA other downstream 2353424 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2929990 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 42932 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 142944 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 238426 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 807159 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 809213 8246703 ~ 8246775 (-)

Expression


Co-expression Network