furina (furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279)


Basic Information

Item Value
gene id furina
gene name furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8373495 ~ 8451252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930322.2
TGTGACGTATTTCCTGAGGAGCGGCGCGTGGACCGCCTCTCCGTCCAGCTCTAGTAGACGGAGATTCTcgtattttttgtgtgtgttttgtgtttgtttgtttgtttattttagctgtttatttccTCCTTGGTGACTTGAATATGTACGGACAGCAATGTTAGCGTTTGGTTTAAAAGGTGAGCCCGTGGAAGCGAGCCGTTACTCCAACGCTTCGTCGCCTAACGGAAAATGGATCCAaagaaagctagctagctatggcaaagtttgtgtgtggtgcaggagataggtgtgtgtgtagagttgtgAAGTAACGTGCCAAAGTCTGAACCTGTCAGAAGATTTGGACAGCCAGAATAGCAAGAGCTTTGTGGTCTCTATTATTGTTTTCTGTTAAGTCTGAGacgagacatttttttttaaaacaacaacaacaacagcaccacacagCTGTAACGTTTGTAACGGACGCGTTCAGTGTTTGTGACTGACCAGCTGAGCTTCACATGTGAAACATGACGCCGTGAGCACAGAGCCTCTCTGGTCTGGGCAGCTTCTCTGAGCTGCTGCTTCATTTCTAGCTTTTGCGTGGCACACTACTCTTGTTTTGCAAGCTGCTCCGACTGTTTTGATCCAGGAAATCCTGATTACAACCGAGACAGCAggctcattttaatttaaaggcaGCGAGTTGCTTAAACTGGACTGATAACTTACAGGAGCTCTgcctctttattattatttttaaatcagtggATCCAAATAGGAAAAAATAGTAACACACTTTTCAACACATCAGGATCTGAATGACCAAATGTTCTCTAAGGTGATTTGAAAGCTTTGCTGCATCCACTTCATGTGCACATTTTGAGGGACTTGAAGACCTGAGGTTTCTGTGACCTCCACCCTCTCTGATGGAGCTGTGCCTGGCCTGCTTGCCGCTTGTCACGCTGCTGACCCTCCTGACCTCCGAGGTCACACCGTCCCTTGCCCAAAAggtttacacaaacacatgggCCGTCCATATCCccggaggagaggaggaagccAACCGCATTGCCCGAAAGCACGGTTTCATTAACCACGGCAATataTTTGGAGAATACTACCATTTCCGGCACCGCAGGGTGGTGAAAAGGTCTTTATCTCAACACAGAGGAACACACATTCGCCTGCACAGAGAACCCCAGgtAAAATGGGCAGAGCAGCAAGTGGTGaaacagaggaagaagagggACATTTACTCCGAGCCAGCTGATCCCAAGTTTGCACAGCAGTGGTACCTGTACAATAGCAACCACCATGACCTCAATGTGAAGGAAGCCTGGAAGCAGGGTGTTACAGGACAGGGTGTGGTGGTGTCCATATTGGATGACGGAATCGAGAAGAACCATCCAGACCTCGAGCGTAATTATGATCCTGATGCCAGCTATGATGTGAATGATGGAGATCCAGACCCTCAGCCTCGATATACCCAGCTCAACGATAACAGACATGGCACACGATGTGCTGGAGAGGTAGCTGCTGTTGCCAACAATGACATCTGTGGTGTTGGTGTGGCCTACAATGCCAAGATTGGAGGTGTGAGGATGTTGGATGGAGAGGTGACCGATGTGGTGGAGGCTCAATCTCTCAGCCTCAACCCTCAGCATATAGACATCTACAGCGCTAGCTGGGGGCCAGAGGATGACGGCAAAACAGTGGATGGCCCTGCCAAGCTCGCAAAGGAGGCTTTTTTACGAGGAGTAACTGAGGGTCGAGGTGGGCTGGGCTCCATCTTTGTGTGGGCATCCGGTAACGGTGGCCGGGAAAAAGACAGCTGCAACTGTGACGGCTACACAAACAGCATCTACACACTCTCAATCAGCAGTAGCACACAGTACGGCAACGTGCCATGGTACAGCGAGGCCTGCTCCTCCACCCTTGCCACTACCTACAGCAGTGGAGGACTCAACGAGAAACAGATTATCACTACAGACCTGAGACAGAAATGTACAGACTCCCACACAGGCACCTCAGCTTCAGCTCCTCTGGCTGCAGGCATCATAGCCCTCGCCCTGGAAGCCAATAAAAACCTGACATGGAGGGACATGCAGCACCTGGTTGTGAGGACATCTAACCCAACTCACCTGATCACTAACGACTGGAAGACCAATGGGGTTGGACGCAAAGTAAGCCATTCGTATGGCTATGGTCTGCTGGATGCTGCTGCCATCGTGGCCCAGGCTAAGAACTGGACCAATGTAGGCCCTCAGCAGAAGTGCATCATCTCCATGGTGTCTGAGTCCAGgAACATTGGGAGCCACCTGGTGATCACCAAGGGTGTAGACGCGTGCTCAGGCAAGCCCAATTTTGTGAGCTCTCTGGAACATGTCCAAGCCCAGCTCACACTGTCCTACAACCGTCGTGGAAACCTGGCCATCTACCTGATCAGCCCACAGGGCACCCGTTCAACTCTGCTCGCCCCCAGACCCCATGACTACTCCTCTGAAGGCTTCAACGACTGGGCCTTTATGAGCACCCACTCATGGGATGAAGACCCTCGGGGCGAGTGGACTCTGGAAATTGAGAATGTGGCCTCAACCAGTGACTATGGCACTCTGACTCAGTTCACGCTGGTTCTCTATGGCACTGCGTCCACATCCGCTGGCTTGTCCGCACCAGACTCCATCCAACTCCCTGAAGATGGCTGTAAAACCTATGACCTCAGTCAGATTTGCACAGAGTGCAACCCCGGGTTCTACATGTACCAGCAGGGTTGTGTACGTGTGTGTCCTGCAGGCTTCACGTCAGTCTCCAACTCTGAGCTTTGGTCCCAGAATGAGGTGGCTCCTGTCCTGCATCCGGCCTGCATGCCCTGCCATGAGCTCTGCCTTACCTGCAGTGGCACAGGGCCAAAAGACTGCCTCTCATGCCCACCTCATAGCCACCTGGACACACTCACTGGCACCTGCCAGCACCAGAACCAGATTCAGCGTGAATCACCCGATGCTGGGTTGTTCCCATCTCGTGGCAGCGCCTCTTCTAGTATCCTGAATCTAGAGATCTCGTCCAGTCTACCCGCCACTGTGGCAGTGCTCTGCTGTGCCTTTATCGCAGCCACCTTTGTAGTGGTGTTTGGCCTGCTCCAGTTCCGCTCGTATAGCCTCACTAAAGTGTGCAGTTCTGAAGCCAGCGTGGGCTCCGTAATGCGTGCCAGCTTCGGCCTGGGCATGGCACGCAGTGGCGTCATTTCCTACAAGGGTATCCCAAGCGTGTGGAACGAAGACGGGGGCAACTCAGAGTCCGAGAATGACGAGTTTGACATCCACAATGAGAGAACTGCCTTCATCAAAACACAAAGTGCTCTTTAACCCTTTCCCACACACTTTTGCTATCTTTCCTCTCCTCaactattttctttctttttctttttgaaaatatGGTCTTTCACAGGCTTGTCTCCCCTCTTTTTCTTTGGGTTTGAtccagctgtttatttattatttctttttttcccccatagtGGTGAGCTTGTAATGTCAGGGCCTCACTGAACACACCTTTTCGTGCTCACCTGGCCTCAGTGCCTCTAAAGGAAAGCCTCCATGGCTGATTGGCTGGAAgatgacacaaaaaaaattgattgtCCCAGGCTTGCCAGCAGGACTGTccaaaaacacaataaacacaatgaTTGTCATTTa

Function

symbol description
furina Predicted to enable serine-type endopeptidase activity. Acts upstream of or within several processes, including determination of left/right symmetry; embryonic heart tube left/right pattern formation; and skeletal system development. Predicted to be integral component of membrane. Predicted to be active in membrane and trans-Golgi network. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including endoderm; eye; liver; median fin fold; and pleuroperitoneal region. Orthologous to human FURIN (furin, paired basic amino acid cleaving enzyme).

NR:

description
PREDICTED: furin-1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0033334 fin morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005615 extracellular space cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01349 FURIN, PCSK3; furin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930322.2 True 3686 mRNA 0.51 17 8373495 8451252

Neighbor

gene id symbol gene type direction distance location
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding downstream 6508 8330088 ~ 8366987 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding downstream 61001 8307279 ~ 8312494 (-)
trnar-acg_5 NA coding downstream 130692 8242731 ~ 8242803 (-)
trnar-acg_4 NA coding downstream 131317 8242106 ~ 8242178 (-)
mrpl46 mrpl46 coding downstream 192844 8173261 ~ 8180651 (-)
LOC113536763 LOC108270703 coding upstream 1752 8453004 ~ 8469432 (-)
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding upstream 40000 8491252 ~ 8508330 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding upstream 71356 8522608 ~ 8529443 (-)
ubap1lb ubap1l coding upstream 83716 8534968 ~ 8543975 (-)
pdcd7 pdcd7 coding upstream 93690 8544942 ~ 8549611 (-)
G178057 NA non-coding downstream 49331 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 98135 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 446437 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 618477 7707511 ~ 7755018 (-)
G178208 NA non-coding upstream 70549 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 141934 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 259925 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 552392 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 735819 9187071 ~ 9189914 (-)
trnar-acg_8 NA other downstream 125733 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 126720 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 128774 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 609065 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 784680 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 531930 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 869714 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 936239 9387491 ~ 9407218 (-)
G178942 NA other upstream 1071164 9522416 ~ 9523330 (-)
G179035 NA other upstream 1362640 9813892 ~ 9815225 (-)

Expression


Co-expression Network