pdcd7 (pdcd7)


Basic Information

Item Value
gene id pdcd7
gene name pdcd7
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8544942 ~ 8549611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930326.2
GCGCAATTCTGCAGCCCAAGGCCCCTTTGGTAGCCGTCGTGTCCGACTGATAcaaatttatactttttttttatttttttttttttaaaaatgtataccAACAAATTAAAATAGATTAACATAGAGTGTCCAAAATGAGCAATagtaaagtaataaaaagtttaatcatttccacattttgttggACTGAAAGAAGGCGTTAAACATAGCTTTAAGCTTTGCTCTTTGCTACTTATTGTCGttgtactgttttattttataagcaAGACGTTAAATTATTACAACtgactattaattaattaacgaactgtgttttgtatttaaacacaaaacttTAGTTGTCGACAGGCACAAAACTTTAAGCTAATTGGTAGGACCCGGGGTGCAGGATGTACAGAAGATGAGAGATATGACATGACACCGGAAGTGGTGGAATTTTAAAGGCAGTAGATAGACTGCAGAGGAAGACCGCCGTTGGTTGAGGAGTGTGAACATGGACAAACCGCAGCAGTATCATTATTCCGGAGGGACACCGCATCAACCTCCACATCCACCTCCACATCCACCGCATATGGCACCGAGAGGAGACTTTCCCGCAGCACCTCCACCAGAGTCGTGGGATGTTTACCGGCAGCACCAGACTCCGCCGGTTCCACACCGTCACTGGCCCCCGTTTCCCCCGGCACGACCACCGCCGCCGCACGGGTCTCTTCATGTTTACCCGTCCCATCTGCCTTTCGACCCCAGCAGACCTCCTCCTGGTTATTTCGCGACATCTCCAGCACCGACACCTTCTTCTCCTGCAAACCCTGGACACAGTGAGGATCCACCTCGCTTTCATCCACCCAACAGAGCTTACCAGTCTAACATGGATAACTATCATAGAGGACATTTTGATCAGAGTGGCAGCTTTTCAAACTCTGCTCCTCCATCATATCAGTCTAGTTTTCAGTCTAATAACAACATCTCGGCTCATAATTACCCTGTGGACCATCATAAGCAAAGTGATCCATCACAGGTTCCTCCTGATCACTCTGACAGAAGCAGCAACAAGCAACATGAGGATGCTTGGCAGAGAAAACAAGACGAGCAGTGGATTCATGCTTTCttacaaagaagaagaaaaacagcacCTTCTTCTGTGAGGCACTCTCCCCCAAAACAATCTGTGTCGGATTTCAGAGAGAAGTTGTACACTGCGGTTAAAATGCTATCTGAGCTCTCTGAGGTGTGCCAAACGTTAAAAAACAACCTTGAGAATGAAACTGTATGGACCGACTCGTACTCAAGAGCAGTGGAGCTGAAGAGCAGCCTGGAGGAAAGCCTGAAGACTCTGAATGATCCGGACAGAGTGGACATGGTGAAGAAGAAGCTGGCTTTGATCAAGAAGAAGCGAGCACGCATGCGCAGGAAGAAAGCCGAGCGCGAGGAGGAGAAACAAGAGCAAGAAGCACGAGCAGCAGAGAAAGAGGCGGCCATTGATAAGCACCAGATGAAGAAGATACAAGAAATCgaagaaaaaaacaggGAGCAAGAACTGAAGCTGGCGGCCGATGCTGTGCTCTCTGAAGTCAGGAGGAAGCAAGCTGATGCCAAGAGAATGCTGGACATCCTCAAAGCTCTGGAAAAGCTGCGGAAACTCCGCAAAGAAGCTGCATCCAGGAAAGGCATGTTTCCAGAGAAGGAGAGTGACGAGGTGTTTGAGGGCCACCTGACGCGGCTCAGGACTCTGATCAGGAAACGCACGGCTGTCTACGGGGCCGAGGAGAAAGCACTGAGGGTCATGCTGGAGGGAGAGCAAGAGGAGGAACGCAAACGTGATCATGAGAAGcggcaaaaaaaagaaagagagaagctgCTGCAGAGGAAACGGGAGATCGACATGATGCTATTTGGAGCTGAACTGCCTCTTGATCATCCGCTTCAGCCGTACCAAGAATACTACACCCAGGCAGAGAGGTCACTACCTGCCCTCGTCCAAATAAGGAGAGACTGGGATCAGTTTTTAGTTCCTGTGGATCACCCTGATGGTTCCACCATTCCTCAGGGCTGGGTTCTACCTGAGCCGCCAGCTGATGACGTCTGGGCCATCGCTCTggagaaataaacatctaaggaAACCACATCCTATTCATTACTGAATGTAACTGACTGATATTTCAAAGATTGACCATTGGACTATGACTTGGCGCTGTTTTATGGTGCACCAATCTCCAACTAAAGACAGCTATTATTTATTGTACTATGTAATACTTTAGAAGAATAAACTGTATGTACTGAGTTGTTTATATTGAGTGAGTGTTACTGTGGTTTCTTTTGAAAAGCAAAGCTGAGGAGTGATCAGCCCTGGACGTTCTCCAGATTTAGCCACAAACCATGTTGTCTAGCAACGGTGAACTTAGTGATCACGCTGTGTAGCATGACAATAACAGAATTTTCCTCAGGAATGTTTATAGTGGTCATGCTGACAGTGCAGTGTTTACATCTAATCATTACAATGCAAAAATTTACAGaaaagcatgttttattttaaaatgccaaAATGTCTGGTTTTTTTggctttcattttttctttaatgttttaaatctgctgtatttgttatttgtattaAATGATCTGAAATGGAAATGGGCTCAGGTAAACAGCTGATGGTGAGGTGTTATGTCTGTGGATTAGTGGAGCAGAGGGTTATCCCTCTAAGCAGGCTCACAAtaacatcacaaacacacacagcttcagctCTTAGACCACACGCACTCCAGAAAACACAGGTGGGTGATGCACATGCTGTTTGCTTTGGTGCAACTTTTCCAAGTAAAGGTTTGCTTGTTATCTTGTTTTCAGATGTGTTTTGGGGTAGGGCATTGATTGGCTGTAAGATGGTTATTTGTGGGTTTTGTATAAGCATTGGGCTACTTGTTTGAGAAACGATCTTCAACAGGTCTTGTGGTTTTGTCTATAAATGGTCTAGATAGTAAAcaaggtgttttttgtttgtaatcCTGTCTAGACGCATATTAAAACGTGATTGTGTCCTTGCA

Function

symbol description
pdcd7 Predicted to enable ubiquitin binding activity. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex. Orthologous to human PDCD7 (programmed cell death 7).

NR:

description
PREDICTED: programmed cell death protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930326.2 True 3042 mRNA 0.45 5 8544942 8549611

Neighbor

gene id symbol gene type direction distance location
ubap1lb ubap1l coding downstream 967 8534968 ~ 8543975 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding downstream 15499 8522608 ~ 8529443 (-)
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding downstream 36612 8491252 ~ 8508330 (-)
LOC113536763 LOC108270703 coding downstream 75510 8453004 ~ 8469432 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding downstream 93690 8373495 ~ 8451252 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 757 8550368 ~ 8564908 (-)
ankdd1a ankdd1a coding upstream 22864 8572475 ~ 8589352 (-)
plekho2 plekho2 coding upstream 46569 8596180 ~ 8612306 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding upstream 257976 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding upstream 341016 8890627 ~ 8890698 (-)
G178208 NA non-coding downstream 22857 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 220778 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 269582 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 617884 7926293 ~ 7927058 (-)
G177733 NA non-coding downstream 794136 7728913 ~ 7750806 (-)
G178227 NA non-coding upstream 43575 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 161566 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 454033 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 637460 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 647989 9197600 ~ 9197805 (-)
trnar-acg_8 NA other downstream 297180 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 298167 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 300221 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 780512 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 956127 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 433571 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 771355 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 837880 9387491 ~ 9407218 (-)
G178942 NA other upstream 972805 9522416 ~ 9523330 (-)
G179035 NA other upstream 1264281 9813892 ~ 9815225 (-)

Expression


Co-expression Network