znf143a (LOC108271103)



Basic Information


Item Value
gene id znf143a
gene name LOC108271103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3254156 ~ 3263298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026930336.2
CGTCAGAAAGAAGAAGTaccttttctatttatttatttatttttctcccaGTGCACGAGACATGGATTAATGCAAGAAAGGCTAGAAGCTAGACTCTGGAGCTGGATAACTACACACATGCGTCCTGCTGCAGAGGAATTTCCTGAATCCTGATCAAGACAGCTGGATTATCCGTGCTGCTGCGGGACTGATTGCTGGCAGCGGGACCATGCTGCTGGCTACAGTAAACCAGGGAGGAGCAGAATTCCCACATGGGCGAGATGATGCTCAGAGCTTCACTCTGTGCCTCGGTGACTTTTCAGACGATCAGTACACAGACAGCTTGGAGGCTGTGACTCTGACAGACGGCTCGACTGCATATATTCAGCGTAATACTCAAGATGGGAGTGTACTGGAGGGGCAGGTTTTCCAACTGGATGATGGTGCTACTGCTTACATTCAGCATATTGCTATACAAAATGGAGATGAGCCCAGTGGATGGTCAGGTGCTGCTACGAGTGACGCTGTGGAAGGCGAGAGTCTGAGTCTGGAGGCTGGACAAGCCGTGCAGCTGGAAGATGGAAGCACTGCTTACGTACATCACATACCAAAAGAGGTGTATGATTCCCCTGCGCTCCAGGCAGTGCAGCTAGAGGACGGCTCCACCGCCTTCATTCAGCATGCGGTGCAGATGTCGCAGTCAGATACAATTCTGGCCATCCAGGAAAGTGACGCAGTGTCTGATCTGCCTCTCGAGGGAATCACAGACCCTGGGACTGTCACTGTGCTGGAACAGTACACCACTAAGATAGAAGAAATGAAACCTTATGCAAACTCTGGCTTGCTCACAAATGAAAATGTAGTGCAGatcGTTTTTCCGAGTCAGGATGTCCATCACGATGTACAGCAGCCTGAAGAGAAATCATTTCAGTGCAGCTATGAAGGATGTGGCAAACTTTACACCACAGCGTATCACCTCAAGGTACATGGAAGAGTACACACAGGTGACAAGCCTTACTGTTGTGACAAACCCGGCTGTGAAAAAAAGTTTGCAACAGGCCACGGCTTGAAAAGCCACATGAGGACACACACTGGTGAAAAACCCTACTGCTGCACAGAAGTGAACTGCACAAAATCTTTCAAGAACTCAGGAGACCTCCAAAAGCACATCCGAATCCACACAGGAGAAAAGCCCTTTCTTTGTCCGTACGAAGGCTGCGGTCGGTCTTTCAGAACCTCCAACATTTGCAAGgtgcacatgcgcacacacacaggcgagAAGCCGTACCACTGCTCCGAGCCAGGCTGCAACCGGGCCTTCGCCAGTGCAACCaactacaaaaaccacagcagGATCCACACTGGCGAAAGACCGTACGTTTGCACCATTCCTGGCTGTGACAAGCGCTTCACCGAGTACTCGAGTCTGTACAAGCATCAAGTGGTTCACACGCCCTGTAAACCGTATGAGTGCAGCCACTGTGGGAAGACCTACAAGCAGATCTCCACGCTGGCCCTGCACAAGCGCACAGCACACGACGACTCGGAGCCCATCGAGGAAGAGCACGAGGACTACGAGCCTCCCGCCGAAGCCATTGATGATCCCTGCCTGAACAGAACGTCGGCGGAAAGTGTAGCACCCTGCTCAgacatgacctctgacctctcagagcaggagcaggtcGCCCTCGTCACGCCGGATGAGGAAGTTGGCTATACGATCACCATGGTAACGCATGATGGCAACATGCTCACCCTCCCAGCCAATGAGTCTGTACTGTCCTCTGCTAAAGTCACCATGGTAACCGCTGACAGCACAGAGGGACAGATGACTATCGTATCACCAGCTTCTTTACAGACCAAACAGGAAGCAGTGCTTCCACACCCAGTTACCCTTCTGGCCACATCTAATGGAAGACAAGTTGCTGTGGAGCTGAGTGATGAGTTGACGCTGGAGGAAGCTCTGAGAATCGCATCAACTATACAGCAAGGAGCCACAACAGACCTGGAACATTAACTCTGATGAAAACACTACATTTTGTGTGTCTGATTTTGCTCCAATGTTTGGACTATTTCCTAGATCTTCCTgtttacattcatatttttgataatgtgtgtgtgaaagatcAGAAAGGCTGTGTGCAGTAAAATAAAGA
>XM_034308873.1
CGTCAGAAAGAAGAAGTaccttttctatttatttatttatttttctcccaGTGCACGAGACATGGATTAATGCAAGAAAGGCTAGAAGCTAGACTCTGGAGCTGGATAACTACACACATGCGTCCTGCTGCAGAGGAATTTCCTGAATCCTGATCAAGCTGGATTATCCGTGCTGCTGCGGGACTGATTGCTGGCAGCGGGACCATGCTGCTGGCTACAGTAAACCAGGGAGGAGCAGAATTCCCACATGGGCGAGATGATGCTCAGAGCTTCACTCTGTGCCTCGGTGACTTTTCAGACGATCAGTACACAGACAGCTTGGAGGCTGTGACTCTGACAGACGGCTCGACTGCATATATTCAGCGTAATACTCAAGATGGGAGTGTACTGGAGGGGCAGGTTTTCCAACTGGATGATGGTGCTACTGCTTACATTCAGCATATTGCTATACAAAATGGAGATGAGCCCAGTGGATGGTCAGGTGCTGCTACGAGTGACGCTGTGGAAGGCGAGAGTCTGAGTCTGGAGGCTGGACAAGCCGTGCAGCTGGAAGATGGAAGCACTGCTTACGTACATCACATACCAAAAGAGGTGTATGATTCCCCTGCGCTCCAGGCAGTGCAGCTAGAGGACGGCTCCACCGCCTTCATTCAGCATGCGGTGCAGATGTCGCAGTCAGATACAATTCTGGCCATCCAGGAAAGTGACGCAGTGTCTGATCTGCCTCTCGAGGGAATCACAGACCCTGGGACTGTCACTGTGCTGGAACAGTACACCACTAAGATAGAAGAAATGAAACCTTATGCAAACTCTGGCTTGCTCACAAATGAAAATGTAGTGCAGatcGTTTTTCCGAGTCAGGATGTCCATCACGATGTACAGCAGCCTGAAGAGAAATCATTTCAGTGCAGCTATGAAGGATGTGGCAAACTTTACACCACAGCGTATCACCTCAAGGTACATGGAAGAGTACACACAGGTGACAAGCCTTACTGTTGTGACAAACCCGGCTGTGAAAAAAAGTTTGCAACAGGCCACGGCTTGAAAAGCCACATGAGGACACACACTGGTGAAAAACCCTACTGCTGCACAGAAGTGAACTGCACAAAATCTTTCAAGAACTCAGGAGACCTCCAAAAGCACATCCGAATCCACACAGGAGAAAAGCCCTTTCTTTGTCCGTACGAAGGCTGCGGTCGGTCTTTCAGAACCTCCAACATTTGCAAGgtgcacatgcgcacacacacaggcgagAAGCCGTACCACTGCTCCGAGCCAGGCTGCAACCGGGCCTTCGCCAGTGCAACCaactacaaaaaccacagcagGATCCACACTGGCGAAAGACCGTACGTTTGCACCATTCCTGGCTGTGACAAGCGCTTCACCGAGTACTCGAGTCTGTACAAGCATCAAGTGGTTCACACGCCCTGTAAACCGTATGAGTGCAGCCACTGTGGGAAGACCTACAAGCAGATCTCCACGCTGGCCCTGCACAAGCGCACAGCACACGACGACTCGGAGCCCATCGAGGAAGAGCACGAGGACTACGAGCCTCCCGCCGAAGCCATTGATGATCCCTGCCTGAACAGAACGTCGGCGGAAAGTGTAGCACCCTGCTCAgacatgacctctgacctctcagagcaggagcaggtcGCCCTCGTCACGCCGGATGAGGAAGTTGGCTATACGATCACCATGGTAACGCATGATGGCAACATGCTCACCCTCCCAGCCAATGAGTCTGTACTGTCCTCTGCTAAAGTCACCATGGTAACCGCTGACAGCACAGAGGGACAGATGACTATCGTATCACCAGCTTCTTTACAGACCAAACAGGAAGCAGTGCTTCCACACCCAGTTACCCTTCTGGCCACATCTAATGGAAGACAAGTTGCTGTGGAGCTGAGTGATGAGTTGACGCTGGAGGAAGCTCTGAGAATCGCATCAACTATACAGCAAGGAGCCACAACAGACCTGGAACATTAACTCTGATGAAAACACTACATTTTGTGTGTCTGATTTTGCTCCAATGTTTGGACTATTTCCTAGATCTTCCTgtttacattcatatttttgataatgtgtgtgtgaaagatcAGAAAGGCTGTGTGCAGTAAAATAAAGA

Function


NR:

description
PREDICTED: zinc finger protein 143-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026930336.2 True 2135 mRNA 0.50 16 3254156 3263298
XM_034308873.1 False 2131 mRNA 0.50 16 3254156 3263298

Neighbor


gene id symbol gene type direction distance location
psmd7 psmd7,LOC107584693,LOC107659147,LOC107553010 coding upstream 20216 3226648 ~ 3233940 (+)
LOC113536638 pmfbp1 coding upstream 282464 2799395 ~ 2971692 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding upstream 487500 2607743 ~ 2766656 (+)
crispld2 crispld2 coding upstream 988401 2236458 ~ 2265755 (+)
usp10 usp10 coding upstream 1029790 2184452 ~ 2224366 (+)
LOC113536476 LOC108271228 coding downstream 19812 3283110 ~ 3352779 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding downstream 301816 3565114 ~ 3572263 (+)
dkk3a LOC108270596 coding downstream 649486 3912784 ~ 3922969 (+)
pkd1l2a pkd1l2,LOC108413304 coding downstream 756629 4019927 ~ 4039717 (+)
tmem41b tmem41b,LOC107730092,LOC107727087,LOC107686813,LOC107694458,LOC106562360 coding downstream 803281 4066579 ~ 4077728 (+)
G175291 LOC108271305 non-coding upstream 15942 3237884 ~ 3238214 (+)
G175287 NA non-coding upstream 34816 3219008 ~ 3219340 (+)
G175284 NA non-coding upstream 41245 3212495 ~ 3212911 (+)
G175256 NA non-coding upstream 55636 3164243 ~ 3198520 (+)
G175263 LOC108271072,LOC108433040 non-coding upstream 73602 3178782 ~ 3180554 (+)
G175370 NA non-coding downstream 122892 3386190 ~ 3386375 (+)
LOC117598422 NA non-coding downstream 169031 3432329 ~ 3434701 (+)
G175389 NA non-coding downstream 184644 3447942 ~ 3452820 (+)
G175493 NA non-coding downstream 316680 3579978 ~ 3581939 (+)
G175517 tmed3,p24b,LOC108271219,LOC107580748,LOC107750507,LOC108441851,LOC105913311 non-coding downstream 341864 3605162 ~ 3608844 (+)
G174546 NA other upstream 1175529 2078077 ~ 2078627 (+)
G174536 NA other upstream 1193873 2058970 ~ 2060283 (+)
G173898 NA other upstream 1889225 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 2431433 790374 ~ 822723 (+)
G173819 NA other upstream 2511446 742021 ~ 742710 (+)
pth1b NA other downstream 382445 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 384057 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 1017946 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 1350108 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 1393307 4656605 ~ 4661136 (+)

Expression



Co-expression Network