mesd (mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495)


Basic Information

Item Value
gene id mesd
gene name mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9758652 ~ 9768100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930355.2
ACTCCAAGCCGAACGCTCTCAACCAATCCGCGAACTCAAGGTTGAAAAGATGGCGTCTTCGTTTGGATGGAGATGTGTAGCAGTGTTGCTTTTTGGAGTATTTATCCTGTCTGTTCATTGTTCAGACAGTAAACCTAAGAAGAAGAAGGATATTCGGGATTACAATGACGCGGATATGGCGAGGCTGCTGGAGCAGTGGGAGaaaGATGATGACATTGAAGAGGGGGATTTGCCAGAGCACAGACGACCCTCCCCGCCCATCGACTTCTCCAAAGTGGACCCTTCCAAACCTGAAGACCTCCTGAAGATGTCCAAGAAGGGAAAGACCGTGATGGTGTTTGCAACGGTGTCCGGAAACCCCACAGAGAAGGAGACGGAAGAGGTCACCAGCCTGTGGCAGGGCAGCCTCTTCAACGCCAACTTTGATATTCAGAGGTTTGTGGTGGGTTCCAATCGTGTCATCTTCATGCTACGTGATGGCAGCTATGCGTGGGAGATTAAAGACTTCCTGATCCTCCAGGAGCGGTGTGAGGACGTGACTGTGGAGGGCCAGGTGTTTCCTGGGAAAGCAGCCAATAAGGCCAACAAGGTCAACAAGGAGAAAGAACAAAATGAgaccaagaagaagaaggacaaGAACGCAGCCAACCGAGTGAATAAAACCAAACAGGAGCTATGACGGCACTGATATCGACAAGGTTTGTGGAGCAGAAGGAAGGCGAGTTGATGCCTTACACAGAGACTACACTCTGAGAAGAGCTAATGAGCCCAGTTGGCTAGAGTGTTTCAGACACTAGTTTCGGACATTTCTATACATGGTTAAATCAAATACCATGCTCCTACatcattatttgcattatttgctTACAGAAGGTACTTGCTCTAAGATGCTTCAGAAAGGACTTCATTCAGTACAGTGTTACTTTTTTTGGTCCCTCAATCTTCACTGaaataattgaaatgaaatgattaatcattaaaaatgatttggcCTTATCAAATAATCCTTTTTATACCTCACCATTATAAATCACTTGAATTCAACACATTGCATTTTGAATCAGAATAAAAGAGATTTGTAATACATTA

Function

NR:

description
PREDICTED: LDLR chaperone MESD

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930355.2 True 1089 mRNA 0.44 3 9758652 9768100

Neighbor

gene id symbol gene type direction distance location
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 807843 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 834267 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 867954 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 1146346 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 1169300 8572475 ~ 8589352 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 59848 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 69899 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 300417 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 345983 10114083 ~ 10251340 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding upstream 490207 10258307 ~ 10452771 (-)
G179004 NA non-coding downstream 4273 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 131469 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 314725 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 445002 9312854 ~ 9313650 (-)
G178867 NA non-coding downstream 446749 9310224 ~ 9311903 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding upstream 2718 9770818 ~ 9774409 (-)
G179372 NA non-coding upstream 343928 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 743521 10511621 ~ 10512024 (-)
G179469 NA non-coding upstream 746596 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 793303 10561403 ~ 10563452 (-)
G178942 NA other downstream 235322 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 351434 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 422466 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 763532 8983182 ~ 8995120 (-)
trnar-acg_8 NA other downstream 1510890 8247690 ~ 8247762 (-)
G179035 NA other upstream 45792 9813892 ~ 9815225 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 718635 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 837411 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1475747 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1640992 11409092 ~ 11420046 (-)

Expression


Co-expression Network