stard5 (stard5,star5,LOC107691451,LOC107709494)


Basic Information

Item Value
gene id stard5
gene name stard5,star5,LOC107691451,LOC107709494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9827948 ~ 9835960 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930358.2
CTCACTTGACTGGACAGAAACGAATGAATGAGTCCTCAGGATTTCCTTTATTTGAATGAGGGATTTACGGGTTTTATAGGGGCTGTAAGTGTCAGTTTGTGCTTTTATGGCAAGCTTTAGCGAGGCGAGTGTAAATTATATCGCTGTCTGTCGGTATTAGCTCGTTCAGCTAATGAAAAAAGCCACGGTTCCTCTGTGCAGCGGTTAGAGCAATAAAACATCACGCTATGGATTATGAGGAAAAGGCCAATTCTGTAGCAGATCGTCTTGTAAGCTACAGGAAAGACGAATCCGGCTGGAAAGTCTGTAAGAAATCGAATGAAGTTGCTGTTTATTGGCGACCTTCATCTGAATTCCCTGGAAATGTGTATAAGGGAGAGGGGATAGTCAACGGCAGTCCACAGAAAGTCTGGGAGTGTTTGAAACCAGATCCAAATGGGCTTCGTCTCAAATGGGACAACAATGTGAAGAAGTTTGAGCTCCTTGAACAAGTTTCTACAGATGTCACAGTATGCAGAACTGTCACTCCCTCTGCTGCTATGGGTGTTATATCACCACGGGACTTTGTCGATGTTATTTTAGTCAAGCAATATGAAGACGGCACGATTACATCAAATGCGACTCATGTGAGCCATCCAGCTTGCCCTCCCCAGCCTGGCTACGTGCGTGGCTTTAATCATCCATGCGGCTGCATTTGTGTGCCTGTACCAGGGGAAGCAGGTAAAACCCAGCTCATCAGCTTCTTCCAGACCGATCTTGGAGGTCTGCTTCCTCGTTCCGTGGTGGATTCGTTCTTCCCTGTCAGTATGATTGAGTTTTACACAAACCTCACTAAAGCTGTTAAATCTCTCAAATAGCACTAAAGGCACTTTCTCTAGAATATACATTTCCATAACTGTTCAACAAAAAGGTATTTTCTGATGCTGTGTTTCCCAGTGAGCACTAACTGACCACTACTGGGttgattattgatttaaaaCTGAAGTCAGTCCTGGCCTGGGCCTTGATCTGACCTCTACAAAATATGTCCTTTTTAGTCCATTATAAGGTTTGACCTCTTGTGTGAGACCAGAAGAGCTGTCTCTTCTGAAACCATTTATTTTTCTGAGATTTCTGACTTCTTCTAAACATTATTGTGCTCACTGGGTTCACATGTAGTTTTCATtggtttttaaatgtattatatgaTTTCAGAAGGAGCAGAACAGAAAAGTAACTTCCCTGAACATTTGTCAAAAATGGCTGTTTAGAAacttaacacacaaaaaatcacATGCAAAGTCATAAGCTTCACCGATTGTACAACTCAGTTAACTATCTGGAACTATTTATAACTGATAAGACGCTAATCAAGTGACAAGCTAACCAGGTGAACAGTGAGTGTCATGTTACGTTTTCTGAACCTTTTAAGTTCCATTTTATCCAAACACTTAAAAAGATATAAGAAGGGAACTGCCacgtatatatttttttctgttttacaaaAATAGCTAAGGTTTGGTACTAGATACTTTGCACTACTGCCTATCCAACcaacattttaatggtttcttAGCCCtcatgatttatatttttaatattaatcaaATTTTGGAATATAACTTCCAATAATAATTTCTCCCTAAAACCTCGCGGATCCACACCTTCCCCATATTACTGTAGTCAGCCTTGTTTTGACTCACGTGgtacttatttttattccacTTGCTTGTAATGCTCATGtgagaaacattttttattagtcTTTTGTTCAAAAGGCCAGAGCAATTTCAGgtttgttttcatatttggtTTGAGTGTAGCGCAGCTGTGGTTGAGGAAATGAAAAAATTCCAGCATGAGCATAAATGTCTTCAGAAGCCCACTTTACATGCAAACTGGGATTGTGGGTAATAATAGAATTACACACAGGACATGAGATAAAGGAGCTAAGTAGTGAGGTTCACTGGCCATAAATTACttcacattacatcacattataaaaacattactgTGAAAGAAATCTCAACAACAAATTTGAACAAATTGCTTTAATTGTCACTTATAGATAAAAGCACAAATGTGGCATGGACAGGTAATAGCACAAATATCAGATCACCAGCATTCTCACCAGCATGCTGGTCTACAAAAATAACTACTACTACATAAATATTCACTTTTCTAGTTTTTTCAGAGTTTGACCTACGTCAGAAGTGTTCCATGGGTGGGAACGAGTTTAAGTCATTGTGCTTATCTGAATAGGATATTAAAAATTTCCTATTAAGATTTCAAAttactgaaaataatttttcagtaCTGGTACTAATTCATCTGCTCTTGGAGACCAGATACAGAATGCATCTGCAGATATGATGCTTTATAAGAAACTACAGTGGGCCCTCCTGCACCCCTAACCCCTGCAAATGTGGAAAAACCGCAAATATCTCTAGGCCccatatttaacacaaaaaaagtaaaacaatacaCTGTACTACAACAGTATGTTTTATAAACTATCAGCAATGtaggctaacacacacacacacacagaggcaatacagtacatgtacagtatgtgatgcaatacatgtacagtatttagaTAGCAGTAAAATTATTAACAGTTATAACCCAAAACtaaagtcaatattttattgcactttaaGGATGCAAAAAGTTGAGAGAAATGCGACATACACCTCACACTCTACTTATACTAGTACGctatcatttttatcataacaACTCCTTcaaagggacttgtatggcacataatctaagcctaatagaCTTAAACAGATTACacactgttatttaacaaagacaaatgtatatgtatgtaaacaTACGTATTGCTTATTAAGTTTTCCTCCATGGGagagttttcaggacagagatttttttatcttattaactgaGGGAACaggtgtttatagctgctacaacataagtgataacaggaaccaacttgttttgCACACATTCCATAATATTCAACtgataaaaaaagtatgacatgtccttatttaattaatttaattgatttattattttcctataacagcatatcacattatgttttattgcttaGTTATCTTTAGACATCAAAGCCTGGCCCTTTATAGGAGTTACTTTTCTATTCTGTACTTTTGAAAATAACATTTGTGAAGACATTAAGGAAAATAAGATTTGGTGCAAACATATGGCTCGAGAGCCTTTTCTGCTacctaaagaaagaaagaaagtctcGGTATGAAATAGGGATGCACCGATCTGATACTGAGTGTCGTAATCAGACCGAAGATATCCTGAATCACTGGACTGGTATCAGATCTGATTTGCCATTTTACAATCTGAAAATTTCAAGATCTGATCCGCTGATGTTTTAAACATTCCATAAATGTGTGACGTTGCCTGACACAACACAAATCTTGCACATGTACGTGCCTGTGATATTTTGCATCACTGACCAACAGAAGCTCACAGAGTCGATTTGATTACTGTGAGGATGACACTTGTTGTCATCATTAGCTGAAACAACTTGAAGCTAACAGGGTGTCTCCATAGCTACACCTTTAAACACCTTTTAATATGTACATAGTCACTAACGGAGCAGTATCAGATAACAGCTCTGATACTggtattatgttttaaaaaaaaagg

Function

symbol description
stard5 Predicted to enable bile acid binding activity and lipid binding activity. Predicted to act upstream of or within lipid transport. Orthologous to human STARD5 (StAR related lipid transfer domain containing 5).

NR:

description
PREDICTED: stAR-related lipid transfer protein 5

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0030301 cholesterol transport biological_process
GO:0015485 cholesterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930358.2 True 3642 mRNA 0.37 6 9827948 9835960

Neighbor

gene id symbol gene type direction distance location
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding downstream 59848 9758652 ~ 9768100 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 877139 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 903563 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 937250 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 1215642 8596180 ~ 8612306 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 2039 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 232557 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 278123 10114083 ~ 10251340 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding upstream 422347 10258307 ~ 10452771 (-)
LOC113536710 NA coding upstream 691073 10527033 ~ 10530371 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 53539 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 73569 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 200765 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 384021 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 514298 9312854 ~ 9313650 (-)
G179372 NA non-coding upstream 276068 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 675661 10511621 ~ 10512024 (-)
G179469 NA non-coding upstream 678736 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 725443 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 738576 10574536 ~ 10576032 (-)
G179035 NA other downstream 12723 9813892 ~ 9815225 (-)
G178942 NA other downstream 304618 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 420730 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 491762 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 832828 8983182 ~ 8995120 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 650775 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 769551 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1407887 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1573132 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 1655747 11491707 ~ 11503962 (-)

Expression


Co-expression Network