dhodh (dhodh,LOC107730177)


Basic Information

Item Value
gene id dhodh
gene name dhodh,LOC107730177
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5537052 ~ 5545521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930360.2
GTTGACTAAAATCACGTGTATGCGCCTCCAGTGTTTACAGCCTGAATGGTCATGGCGGGACAGCTGAAGAAGCGTCTGAAGGATGCTGTAAAGATCCTGGGATGTGGCAGCACCTTATTCCTGGGATACCTCACTGTGACCGGGGACGAGCGCTTCTATGCTACCACCCTCATGCCCGTGCTGCAAAGACTTGTGGGAGCAGAAACAGCTCACGTCATGGCTGTGCGCTTACTCAGCCTGGGCCTGGTGCCCAGAAGTCGCTACCAGGATCCTGCATCACTGGAGGTAAAAGTGATGGGACGGAGGTTCGGGAATCCAGTCGGGATCGCAGCAGGGTTTGATAAGCACGGTGAGGCAGTGGATGCTCTGTACCGGCTGGGCTTCGGCTTTGTCGAGGTGGGAACAGTCACCCCGAAACCACAGGAGGGAAATCCGAAACCCCGCGTGTTCAGACTGGAGGCCGACCAGGCGGTTATTAACAGATACGGTTTCAACAGCTGTGGCATTGCAGCTGTTCAGGAGAGATTAAAAGCCAGAGAAGTTGTTCAATCTGGGCTCACAAAAGCAGGCAAACCGCTAGGCATCAACCTGGGGAAGAACAAGCTGTCCACTGATGCCGTGGCTGATTATCTGGAGGGAGTGAGGACGCTTGGCCCCCTCGCTGACTACCTGGTAGTGAATGTGAGCAGCCCGAACACTCCGGGCCTCAGAGACCTGCAGGGGAAGAAAGAACTGCGCCATCTACTGGACCAGGTACTGAAAGCGAGAGACAATCTGCAAGGAGCGAATCGGCTGCCAGTAATGGTTAAGATTGCTCCGGATCTCTCCCAGCAAGACAAGCAGGACATTGCAGAGGTCATCACAGAGCTTGGTGTGGATGGTTTAATCGTCTCCAACACCACAGTGTCCAGGCCTGAGACCCTGCAGGACCACAACAGGAACGAGGTGGGGGGTCTCAGCGGGCAGCCGCTCAAAGAGCTGTCCACTCGTACAGTACGGGAGATGTACACCTTAACGaaagGGAAGGTGCCTATAGTGGGTGTAGGTGGAGTGGCTAGTGGACAGGATGCCCTGGATAAGATCCGTGCCGGAGCATCTCTGGTTCAGCTCTACACAGCGCTGGTGTATCAGGGTCCTCCGGTCGTAACCAAGATCAAAAGAGAACTGCACGAGCTCTTAACGGAACAAGGATTCAATAGTGTATCAGAAGCAGTAGGTGCTGATCACAGGACGTCTGATGGTGTcggatcatcacacacacaagggaATTAGGCTCTAAAGTGCAGCTCATGTGTAACTCGCCAGCTCAAGGGAGTGGCTCAGACTGGTGTTAGATGGTGAAGTCAGGTTTCCAGCGTCAGATTTTCTCCTTCATCTGATCTGATTTGTGGATTCAGATCACTGACGCAAGACCCTGAGCTGAAATGTTTGAATGTGGGCCAGTATGGAATTGAAAAGGTCTGAATATATGAGGTGACATGATGAAACTCAAGTATCAGCAGTGCGACCCAAGATGTGGAGTGACTgacttaaaaatttttttaaaaaaaacatactttaacGGAGGGCAGAGACTTATTCATGAAGTGTAAACAAGCTGACCATGGATCAATTTTTGTAGCGATTATGTGATGTGCCTTGTcagatttttaatgtaatgtaataataataaaaatcttttgaatactaaa
>XM_034308452.1
GTTGACTAAAATCACGTGTATGCGCCTCCAGTGTTTACAGCCTGAATGGTCATGGCGGGACAGCTGAAGAAGCGTCTGAAGGATGCTGTAAAGATCCTGGGATGTGGCAGCACCTTATTCCTGGGATACCTCACTGTGACCGGGGACGAGCGCTTCTATGCTACCACCCTCATGCCCGTGCTGCAAAGACTTGTGGGAGCAGAAACAGCTCACGTCATGGCTGTGCGCTTACTCAGCCTGGGCCTGGTGCCCAGAAGTCGCTACCAGGATCCTGCATCACTGGAGGTAAAAGTGATGGGACGGAGGTTCGGGAATCCAGTCGGGATCGCAGCAGGGTTTGATAAGCACGGTGAGGCAGTGGATGCTCTGTACCGGCTGGGCTTCGGCTTTGTCGAGGTGGGAACAGTCACCCCGAAACCACAGGAGGGAAATCCGAAACCCCGCGTGTTCAGACTGGAGGCCGACCAGGCGGTTATTAACAGATACGGTTTCAACAGCTGTGGCATTGCAGCTGTTCAGGAGAGATTAAAAGCCAGAGAAGTTGTTCAATCTGGGCTCACAAAAGGCAAACCGCTAGGCATCAACCTGGGGAAGAACAAGCTGTCCACTGATGCCGTGGCTGATTATCTGGAGGGAGTGAGGACGCTTGGCCCCCTCGCTGACTACCTGGTAGTGAATGTGAGCAGCCCGAACACTCCGGGCCTCAGAGACCTGCAGGGGAAGAAAGAACTGCGCCATCTACTGGACCAGGTACTGAAAGCGAGAGACAATCTGCAAGGAGCGAATCGGCTGCCAGTAATGGTTAAGATTGCTCCGGATCTCTCCCAGCAAGACAAGCAGGACATTGCAGAGGTCATCACAGAGCTTGGTGTGGATGGTTTAATCGTCTCCAACACCACAGTGTCCAGGCCTGAGACCCTGCAGGACCACAACAGGAACGAGGTGGGGGGTCTCAGCGGGCAGCCGCTCAAAGAGCTGTCCACTCGTACAGTACGGGAGATGTACACCTTAACGaaagGGAAGGTGCCTATAGTGGGTGTAGGTGGAGTGGCTAGTGGACAGGATGCCCTGGATAAGATCCGTGCCGGAGCATCTCTGGTTCAGCTCTACACAGCGCTGGTGTATCAGGGTCCTCCGGTCGTAACCAAGATCAAAAGAGAACTGCACGAGCTCTTAACGGAACAAGGATTCAATAGTGTATCAGAAGCAGTAGGTGCTGATCACAGGACGTCTGATGGTGTcggatcatcacacacacaagggaATTAGGCTCTAAAGTGCAGCTCATGTGTAACTCGCCAGCTCAAGGGAGTGGCTCAGACTGGTGTTAGATGGTGAAGTCAGGTTTCCAGCGTCAGATTTTCTCCTTCATCTGATCTGATTTGTGGATTCAGATCACTGACGCAAGACCCTGAGCTGAAATGTTTGAATGTGGGCCAGTATGGAATTGAAAAGGTCTGAATATATGAGGTGACATGATGAAACTCAAGTATCAGCAGTGCGACCCAAGATGTGGAGTGACTgacttaaaaatttttttaaaaaaaacatactttaacGGAGGGCAGAGACTTATTCATGAAGTGTAAACAAGCTGACCATGGATCAATTTTTGTAGCGATTATGTGATGTGCCTTGTcagatttttaatgtaatgtaataataataaaaatcttttgaatactaaa

Function

symbol description
dhodh Predicted to enable dihydroorotate dehydrogenase activity. Predicted to be involved in 'de novo' pyrimidine nucleobase biosynthetic process and pyrimidine ribonucleotide biosynthetic process. Predicted to be located in membrane and mitochondrion. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in postaxial acrofacial dysostosis. Orthologous to human DHODH (dihydroorotate dehydrogenase (quinone)).

NR:

description
dihydroorotate dehydrogenase (quinone), mitochondrial-like

GO:

id name namespace
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006222 UMP biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0004158 dihydroorotate oxidase activity molecular_function

KEGG:

id description
K00254 DHODH, pyrD; dihydroorotate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930360.2 True 1691 mRNA 0.51 9 5537052 5545521
XM_034308452.1 False 1688 mRNA 0.51 9 5537052 5545521

Neighbor

gene id symbol gene type direction distance location
hp LOC108270509 coding downstream 27110 5505917 ~ 5509942 (-)
dpep1 dpep1,LOC107730179 coding downstream 55765 5465673 ~ 5481287 (-)
LOC113536779 LOC108271307 coding downstream 84711 5434667 ~ 5452341 (-)
nqo1 nqo1 coding downstream 90330 5419996 ~ 5446722 (-)
LOC113536772 LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636 coding downstream 118371 5407596 ~ 5418681 (-)
ist1 ist1,LOC107705324,LOC107730168,LOC107600347 coding upstream 21139 5566660 ~ 5573176 (-)
LOC113536546 hnrnpll,hnrll,LOC106564787 coding upstream 45553 5591074 ~ 5664681 (-)
sos1 sos1,LOC106564790 coding upstream 166927 5712448 ~ 5760722 (-)
LOC113536391 eif4a2,LOC107568626,LOC108267852,LOC107593804,LOC105889495 coding upstream 228036 5773557 ~ 5781153 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding upstream 235704 5781225 ~ 5786544 (-)
G176354 NA non-coding downstream 129953 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 423784 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 689911 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 696359 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 800636 4732382 ~ 4736416 (-)
G176556 NA non-coding upstream 86305 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 537307 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 626677 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 638814 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 715276 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 340234 5139610 ~ 5196818 (-)
G176307 NA other downstream 456157 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1032723 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1540599 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1627159 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 150859 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1311234 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1934901 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2034913 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2130395 7675916 ~ 7764430 (-)

Expression


Co-expression Network