mfsd8l1 (LOC108271204)


Basic Information

Item Value
gene id mfsd8l1
gene name LOC108271204
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11096127 ~ 11108565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930385.2
CCTGTGCAGGAGGCGGGACCAGGTGGAACCAGGACGGGAAATCAGGAGCTAGACGCGGTGTCAGTGTGTACTGAGGGAAATCAGCACAGGTATAATGGGACTGGTATTATGGACGCAGTGCTGattatattcacacactcttacacttatttattaaagtcagCGAGCAGGTTTAAGCAGCAGAAATGGATGATGGACGCAAGAGAAAGCTGACATTTATTACAATCGGACTGATTTTCCTGCTGAGTGGAGTGGAATATGCTGTGATTTTACCTACGATCTGGCGTTTCCTGCAGACGCTGGACGCCGCTCCATATTTTCTGGGTCTCAGTCTGTCAGCGTTCAGCCTTAGTGGCCTGCTCTCAGGGCCGTTATTCGGCCTCTGGTCCGACAGGACACATGGCACCAAGAAGATCATCCTGTTCGCCAACTGCTTTGAAATCAttggtaattttatgtattttacaggattttccAAGTGGCTGCTACTGAGCAGTCGTTTTGTTGCAGgaaTCGGGACAGGAGCTGGTTCGTCTATATTTGGTTTCTTGACGAGAATCACGGCCCCTGAAGATCGGTCCACTGTCTTCGCTGCTGTCATGGCTTGCAGACAAGCTGgccttctgattgGTCCTGCgttcaacattttcctcagactGTGTGACTTCCAGCTTGGACCGTTCGTGGTGAATAAATACACCGCTCCCGGGatctTCATGTGTCTACTGTGGCTGCTGCTTCAGCTGATTGTGTTGCTGATGTACTGGGATCTCAGAGGAAGGAACGAGGGATCAGAAGAAGAgaagccagaagaagaagagaggctgTTGGTTCGATCCAATGACCTCTCTGAGTCATATGGAACACTCCACAACTCACCTGTAATGGACCAGACCATCGCTAATGGCAACTTGACTCCGCCCTCGCCACCTTTTGAACAGATCCACTCCAACCCTTTCAGACACTTCAGTGCTGcacgagAGTTTCTGAGAGAGGAGGTGGTGGTTCTGCTCACGGCTCAATTCATCACACTGTTCAACCAGACAGCACtggagACGATGGTGACTCCGCTGACGCAGCAGTACTTTAATTTCGGTGAGTTGGAGAACAgtgtgatgtactgtatgtgtggagtGGAGGTGATTGCTGGCTTCGTCTTTGTTCGCTGGATCAGCAGGAGGGTGGAGGAGAGGGTGGTGCTGTCCATCGGCCTCTTCCTCGCCAACATTTCCTGTGTCTGGTGTCTCATCTTCCTCGCTAACCCTCAggGTGGGTTCTCGTGGCAGTTAACAGAGTTCATCGTCGGTGTGTTCCTGCAGGTTCTGGGTCTGCCCTTTATCGCTGTCGCTCAGGTGTCTCTCTTCTCCAAAGTGACTGCTGAGAAAACACAGGgtttcAGTCAGGGAATTCGGCGCTCTGTTGGAGGTTTGGCAACTATTCTGGGTCCGTTATGGGCTGGAACtttgacctttaacctttatgTGATGCTGGGAGTGATGGTGGGCTTACTGGCACTGCttactatTATGGTGGCCGTCTCATACAAGAGGCTGGTCGAGCGCACGACAGTGGAGCACACTCAGGAATGAGACACGACCCACATGGGATGGTGTTTAAGGAATGaagttaaacacacactgtttgtaAAGCGAGTGTGTATTTCCTGTACAGAATGCAGTAGAGGAGACATGGAATGAACGAGGTGTACTCTATGCAGTGaccataatatttattattgatatcATTTAAAAGCTAAACTGAAATCCAAAGCAATAATTGTATAGGATCCTTTTTCATGTGATGAACACAAACAGCACACACTCTTACATTCACAATGTCtaggtttattatttaaagactTTTGCAAATCTGTAATAACACAATTTTATAAACTTGCCCAGTTCATACTTCACAAGCTGTTTTTATTGGTTATGGTTAGCTCCACCCCTTCAACTCTCTGGAGCTGTCCCTTCACCCCACCCCTTTAGTTTTCTGAAGATGTCCACTTGGCCCAGCCCCTAATGCTCTTCAGCCATCCACCTGGCCCCTCCCCATCATCCCACCTGGCCTCACCCTCTCTCGAGACATCCACCTTTCCCTGTCCCCTGTTAGCTCTCTTCAGCCATCTACATGGCTTTGCACTCTTAGTTCTCTGAAGGCATTCACCTACCACCACCCTTAATCCCTCTGGCTCCTCCCACCTGGCCCCACCCCCTCAGATCTCTGAATCCATCCACCTGGCCCCACCCTCCTAGCTCTCTGAATCCATCCACCTGGCCCCGCCCTCTTGGCTCTCTGAATCCATCCACCTGGCCCCGCCCTTTTGGCTCTCTGAATCCATCCACCTGGCCCCGCCCTCTTGGCTCTCTGAATCCATCTACCTGGCCCCGCCCTCTTGGCTCTCTGTATCCATCCACCTGGCCCCGCCCTCTTGGCTCTCTGAATCCATCCACCTGGCCCCGCCCTCTTAGGTTTCTGAATCCATCCACCTGGCCCCGCCCTCTTAGCTTTCTGAATCCATCCACCTGGCCCCGCCCTCTTAGCTTTCTGAATCCATCCATCTGGCCCCGCCCTCTTAGCTCCCTGGAGACAAACTGTTGTCCAGTTCTCTTAGCACTTTGACCATCTCTTGGCCTTAGCTCTTTGGAGCCATTCACCTGGCCCcgccctctcttctctctgtagTTGATctgtaaatgattatttataatcacaacaTGAATATTTAAAGAAGTAAACAAGGACTTCTAGCTGTATGATAAGCGACTTGTGAGACTTGGTCACAATCATggttgaatttatttatttatttttacaaatctgTTTAAGGATTACTGATTATGACTTACATTCTCATTGTTGTAtttacacgttattgcactgTGTAGAATtagcatatatatttatataattcataaatgactaaaatacactaaaacaaTGTACAAAAGCAAGACATTTGGGACAGAAGGACTTATTTTCAGTGAAGTCAACCTAACCTAACAAGTAAAAACTCATCTACATTTTAGTAGCTTTAGAACAAACgatttaaacatataaatgtaaatatgtaaatatatttcatctCATATAGCTTCTGTCCCAAACATATTGCTTTTCTATACACTAACTACATGCGATGGGAAAGTGTGTGATTGACACTGGATCTCATCTTAATACGGacaatactgaaatactgaaatttattattaaaatatgatctGTCAAACA
>XM_034308481.1
GGGCATAAAGCAGGAATTTGCTGTGATTTTACCTACGATCTGGCGTTTCCTGCAGACGCTGGACGCCGCTCCATATTTTCTGGGTCTCAGTCTGTCAGCGTTCAGCCTTAGTGGCCTGCTCTCAGGGCCGTTATTCGGCCTCTGGTCCGACAGGACACATGGCACCAAGAAGATCATCCTGTTCGCCAACTGCTTTGAAATCAttggtaattttatgtattttacaggattttccAAGTGGCTGCTACTGAGCAGTCGTTTTGTTGCAGgaaTCGGGACAGGAGCTGGTTCGTCTATATTTGGTTTCTTGACGAGAATCACGGCCCCTGAAGATCGGTCCACTGTCTTCGCTGCTGTCATGGCTTGCAGACAAGCTGgccttctgattgGTCCTGCgttcaacattttcctcagactGTGTGACTTCCAGCTTGGACCGTTCGTGGTGAATAAATACACCGCTCCCGGGatctTCATGTGTCTACTGTGGCTGCTGCTTCAGCTGATTGTGTTGCTGATGTACTGGGATCTCAGAGGAAGGAACGAGGGATCAGAAGAAGAgaagccagaagaagaagagaggctgTTGGTTCGATCCAATGACCTCTCTGAGTCATATGGAACACTCCACAACTCACCTGTAATGGACCAGACCATCGCTAATGGCAACTTGACTCCGCCCTCGCCACCTTTTGAACAGATCCACTCCAACCCTTTCAGACACTTCAGTGCTGcacgagAGTTTCTGAGAGAGGAGGTGGTGGTTCTGCTCACGGCTCAATTCATCACACTGTTCAACCAGACAGCACtggagACGATGGTGACTCCGCTGACGCAGCAGTACTTTAATTTCGGTGAGTTGGAGAACAgtgtgatgtactgtatgtgtggagtGGAGGTGATTGCTGGCTTCGTCTTTGTTCGCTGGATCAGCAGGAGGGTGGAGGAGAGGGTGGTGCTGTCCATCGGCCTCTTCCTCGCCAACATTTCCTGTGTCTGGTGTCTCATCTTCCTCGCTAACCCTCAggGTGGGTTCTCGTGGCAGTTAACAGAGTTCATCGTCGGTGTGTTCCTGCAGGTTCTGGGTCTGCCCTTTATCGCTGTCGCTCAGGTGTCTCTCTTCTCCAAAGTGACTGCTGAGAAAACACAGGgtttcAGTCAGGGAATTCGGCGCTCTGTTGGAGGTTTGGCAACTATTCTGGGTCCGTTATGGGCTGGAACtttgacctttaacctttatgTGATGCTGGGAGTGATGGTGGGCTTACTGGCACTGCttactatTATGGTGGCCGTCTCATACAAGAGGCTGGTCGAGCGCACGACAGTGGAGCACACTCAGGAATGAGACACGACCCACATGGGTATGActagctatatacagtatatcagaaaCATTGATTAAATGCACTTTAGTTGGTTTCATCATATCAAAGTCAGAGTGTACAAATTTTTGCACTTTCCTGTACATAgcttaattaaatataaacacaatccTCCATTTCATAcctggatttttttatttgcaaagtctgtaaatgatgatgtcattttgtcatttctggAGGTGAAAACCATAAAAGACAGTCGCCTGGATTATAAATACGTCTATGTGACTCTgtcctcagtgtgtgtatgtgttttaaaaaataatgtttgatttaaaatgaagaatttcTGACTACAGCAACTTGGTAtgacaatgaaatgaaatgattaattATAGTGGTATCACATTACGACTTTAAAGCACAGAGGACGAAAAAGCAAACGGGAAATTCAGATACATTtcagtctgtctctgtgttaaataagtcattattaaattaaataactctGATTCAGACTTTCACACTCAACTGCATTCACAATACATACAATTcaaagtgaaaagaaatgtaatgtgttgaaattcagttttctttaaatgtttagaGCAGATTTCATGCTGTATGGGATAAGACATTTATTAGGATTTTATTATCTATACCACACAATACatagtattatttattgttaattgttatacatttctgtattttatgtatatatttgtttataacattttttatttttttatgtgtattaACCATAT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930385.2 True 3231 mRNA 0.47 12 11096127 11108565
XM_034308481.1 False 2095 mRNA 0.43 11 11098019 11107832

Neighbor

gene id symbol gene type direction distance location
hykk.2 hykk coding downstream 451933 10639021 ~ 10644194 (-)
nmur1a LOC108270657 coding downstream 460770 10623289 ~ 10635357 (-)
LOC113536600 NA coding downstream 498889 10594672 ~ 10597238 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding downstream 503163 10580693 ~ 10592964 (-)
rnf13 rnf13 coding downstream 540929 10544767 ~ 10555198 (-)
polr2h polr2h coding upstream 1980 11110545 ~ 11113589 (-)
LOC113536755 acap2 coding upstream 87474 11196039 ~ 11237809 (-)
psmd1 psmd1 coding upstream 320040 11428605 ~ 11475968 (-)
LOC113536618 LOC108271381 coding upstream 370043 11478608 ~ 11481509 (-)
LOC117598431 NA coding upstream 411554 11520119 ~ 11521620 (-)
G179487 NA non-coding downstream 516667 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 520095 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 532675 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 580926 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 584103 10511621 ~ 10512024 (-)
G179727 NA non-coding upstream 85872 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 450354 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 619712 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 887605 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 944716 12053281 ~ 12054861 (-)
LOC113536673 NA other downstream 401008 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 572548 10486735 ~ 10523579 (-)
G179035 NA other downstream 1280902 9813892 ~ 9815225 (-)
G178942 NA other downstream 1572797 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1688909 9387491 ~ 9407218 (-)
nppc anfc4 other upstream 135282 11243847 ~ 11246310 (-)
G179803 ncl other upstream 300527 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 383142 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 402281 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 419392 11527957 ~ 11532033 (-)

Expression


Co-expression Network