cdhr5a (LOC108270552,LOC108412775)


Basic Information

Item Value
gene id cdhr5a
gene name LOC108270552,LOC108412775
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5318352 ~ 5325458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930389.2
GCTTTATGTGAAGAAGTACCAGCTGGTGCCACGGTCCCCTCTAGTCCTCCATACTTATTTGTGTTCATCACATATTGGGACATGGAAAGGAAATATAAGCTAAAATCCCTAAACACTGCCTTCAGCTGCATGATAGCGTTCCTCCTCCACAAATTCTGCCTTGCTGAAAAAATTTGTTCAGTTCCCTCAGAGCCTGTGACTATTAAAGAGAACAACACAATCAATGCCGTTGTTGTCCATATtaacacaacaacaaagaacGTCACACTGACTCTCACCGAGAACCCAGACAATGCTTTTGACCTGAGGGGACTGGATCTGATCGTGAAGAAACGCCTGGACTTTGAAacTCTGTTAAATCCTGAGGAGCTCACAGTTCAAATCCGCTGCAATAAAACAGGATCCAGAAGTATCACTTTGACAGTGCTTGTTCAAGTCGAGAACATCAATGACAACCCTCCTTCATTTGCCCAGAGTAAATACATTCTAGATGTTAATGAGCTCACACCTGTTAACACCAGCGTGGCCCAGATTGAAGCAAAAGATGATGATTCAGGAGTTTTATATTACGCCTTGGAACCAACTCTGAACCCATATTTCCGACTCGAGAACATGTACAAGCCAAATATTCTCGTCAACAAGACTTTGGATTATGATGTCGTCCAGCAGGTGACATTGACCTTATATGTGCAGgataCTCCACCATTGTCACTGCCAGGCCAAATCTCTTTCACAGCCACCACGACGATTATAATCAACATAAAAGACATTGACAACCGTCCACCCTGGTTCCAGCCGTGCACGAGAATAACTTTTGGTACCGCCAAAATCTGCCTGAGCGTTGGGTATAAGGGCAGAGTCAACTTAACAGAAAGACAGGAAGGACCACTACAGTTACATCCAGGGCCGATCTACGCaagagatggagacagaagCAGAAATGAAGAGATTAGCTATAAAATTGTTAGAgGAAATGAAGACAACATATTTCAAATAGATGAAATCACGGGAAACATAACCATGCTAAAACCAGCGGACATTGCAGGCCCAATATCTCTCACAGTTTTGGCTTCCCAGGTGTCAAACCGTGACCAGTTTGCTTCCACTTCAGTCAACATCGAGGTGATGAAAAAGAGCAGGAACCCACCAAAATTCGAGAGGGAACGCTATGAGGCATATGTTTACAGCAACTCAGGCCCTGAGAACATGGTGCTCAGGGACAGGACTTCAAATAGGCCCTTCAGAGTCAGAGCCAGGGATGATGATTTTGCAAATGGAATAAATCCTGACATAAGATACGAAGTACAGTACAGCAGTTACGTCAACATAACCACAGATGGATTTGTGCTTCTGAAAAAACCTGTTCGGACCGACTCGTTTGCTTTGCAAGTTCGGGCTGTTGATGTGTCAACTGGTGAGTCGGGAACGGCGGCTCTGTCCGTGCTTGTCCTACCACCCGTGGGAGTGCAGTCGCCCTCAGAGGGATACCGTGCTGGAGATATGGCCTTGCTGGGCTTCGTAATGGCTGCCTTGCTGGTTCTCTGCCTCATCGTGATTGGCTATCTCATCTCCCGTCTGAAGAAAAGGAACCCAGACACACTCAAGTTATCAGAGTGTTTAGGTCCATGCTTGCAGCATACTCAACCCACTGATGGGTTAAGGCCAAGAGACAGCATGCAGTTCACCAATGATGGCTTCCTGAATGAAGCAGACATGGGCAGGTTGGCAACGAGGAGGCCAGATAAGAGAgacaggaagcaggaagtgtCTCCGAAATGGAGAGTGAGAGTGACACCACGTGAGAGGCAAGGACACTGCAATTCCTGTGGCACGCGAGTTCGCTCGAACCATGTGCACCGCAGCAGCCCAGCTCTCCACCCCAAAGCCCAAGGAGCTAAAAACCAAGTCAGATCCATCCTAActaaagagagaaggaaggacaGACAGAAGACGGTGTGGTTTAAAGAGAGTGAGGATTCCTCAGACATCGAAGTGGAGATCATTCCTGATGACATAGGGCTTAAacatgaggaagaggatgaaaaCTCGTCTTCTCTGGCTCTAAAAGCCAGTGATATGGAATTGGGTGAGTTGACTATGATGAACATCCAGGACTTTGACAAGCAGCAGGAAAATGTTTCTGACCACCAAGAGCCACCGGATCCAGACAAAACAGTCCAGTGAATGCCAAGAGGGCTTGGAATCAGTAAACCACATCCCAATAAGACTTAAACCAGTCATTCCTAAGCTGGTATctgggtgattccatgatttgGGTGCCATTTATTTCCCACTGATATTATCCCACTGTCCGAGCCCACTATAGCTACACTTTCatcttaaaatatatattagaatatttcaaaaaacattattatttttattaatgtgtgaatACATTTAACATCTCTTGCGTGAAAAATCCTTTTCCACAAGCCTTTTCCATGCGCCGTCCATTATAGGTtacacattttagttttttctcTCAATTCTGTTACTTgaaaacactctgaacacattcacccctgtgaaatatttggaatattccacaagtaaTATATTCAGGTTGCATAATATGAATTTCCTGGGGATcatggaaagaagaaaagtgcattctctcattcttttttctttacttttaattatGTTGTGATACTGACTGACAAagtcactttgaaagtataaCCCTCTTACCCAAATTACacactgaaagtaaattattatgtaattattagaaatcattcaaatgttatGCTAACCATATTTTGCGTATTTGTGCTAATCCTGTATTCAACCCTGTTGCTTATTTACGAGCAAAATGAGCCATTGACAGCtaagaaaccttgtaaaaatgaCACTGTTGCCTGAGATGGGCTACCACATTTTATATGGTcaaatgttttcttagatttaatgttgaaaaatgacaaaaatttaAGGGCTACATGGCACCACAATCGTGGAATCACCCAAACGTATTCAAGCATTTCTTAATTATGATGAGGTGCAATGCCTTACAAATCTAATTCACTGGTGTCCTCATATGGCAGGGTACTGAGAATCTTTTATCTGtgataaaaatgctgaaaaaatggCCATAATTCACATCCTGACTACAGCTGTAACATGTCATTTAGAAACATGAAAGactaatgtgcaaaaaaaaatagttttgcaGCTATAACAAAAATCATCATTTCTGTTTTGGAGCATTATAACTGCACTAAACATAAGATTTGCACTAAGCACTAATTATGCACTAGAGAATAACTTAATggttgtatttatattttttctgtctaGTATAATTTTTTATTGCTGTGAATAACATTTTGTATACACGAATACACATAAAGACTCtaagaatattttatataaatgtgaaaCTGTTATTGTGGAagtgcaaaaatgaaaaataaagcaagTGAATGTG
>XM_026930390.2
GCTTTATGTGAAGAAGTACCAGCTGGTGCCACGGTCCCCTCTAGTCCTCCATACTTATTTGTGTTCATCACATATTGGGACATGGAAAGGAAATATAAGCTAAAATCCCTAAACACTGCCTTCAGCTGCATGATAGCGTTCCTCCTCCACAAATTCTGCCTTGCTGAAAAAATTTGTTCAGTTCCCTCAGAGCCTGTGACTATTAAAGAGAACAACACAATCAATGCCGTTGTTGTCCATATtaacacaacaacaaagaacGTCACACTGACTCTCACCGAGAACCCAGACAATGCTTTTGACCTGAGGGGACTGGATCTGATCGTGAAGAAACGCCTGGACTTTGAAacTCTGTTAAATCCTGAGGAGCTCACAGTTCAAATCCGCTGCAATAAAACAGGATCCAGAAGTATCACTTTGACAGTGCTTGTTCAAGTCGAGAACATCAATGACAACCCTCCTTCATTTGCCCAGAGTAAATACATTCTAGATGTTAATGAGCTCACACCTGTTAACACCAGCGTGGCCCAGATTGAAGCAAAAGATGATGATTCAGGAGTTTTATATTACGCCTTGGAACCAACTCTGAACCCATATTTCCGACTCGAGAACATGTACAAGCCAAATATTCTCGTCAACAAGACTTTGGATTATGATGTCGTCCAGCAGGTGACATTGACCTTATATGTGCAGgataCTCCACCATTGTCACTGCCAGGCCAAATCTCTTTCACAGCCACCACGACGATTATAATCAACATAAAAGACATTGACAACCGTCCACCCTGGTTCCAGCCGTGCACGAGAATAACTTTTGGTACCGCCAAAATCTGCCTGAGCGTTGGGTATAAGGGCAGAGTCAACTTAACAGAAAGACAGGAAGGACCACTACAGTTACATCCAGGGCCGATCTACGCaagagatggagacagaagCAGAAATGAAGAGATTAGCTATAAAATTGTTAGAgGAAATGAAGACAACATATTTCAAATAGATGAAATCACGGGAAACATAACCATGCTAAAACCAGCGGACATTGCAGGCCCAATATCTCTCACAGTTTTGGCTTCCCAGGTGTCAAACCGTGACCAGTTTGCTTCCACTTCAGTCAACATCGAGGTGATGAAAAAGAGCAGGAACCCACCAAAATTCGAGAGGGAACGCTATGAGGCATATGTTTACAGCAACTCAGGCCCTGAGAACATGGTGCTCAGGGACAGGACTTCAAATAGGCCCTTCAGAGTCAGAGCCAGGGATGATGATTTTGCAAATGGAATAAATCCTGACATAAGATACGAAGTACAGTACAGCAGTTACGTCAACATAACCACAGATGGATTTGTGCTTCTGAAAAAACCTGTTCGGACCGACTCGTTTGCTTTGCAAGTTCGGGCTGTTGATGTGTCAACTGGTGAGTCGGGAACGGCGGCTCTGTCCGTGCTTGTCCTACCACCCGTGGGAGTGCAGTCGCCCTCAGAGGGATACCGTGCTGGAGATATGGCCTTGCTGGGCTTCGTAATGGCTGCCTTGCTGGTTCTCTGCCTCATCGTGATTGGCTATCTCATCTCCCGTCTGAAGAAAAGGAACCCAGACACACTCAAGTTATCAGAGCATACTCAACCCACTGATGGGTTAAGGCCAAGAGACAGCATGCAGTTCACCAATGATGGCTTCCTGAATGAAGCAGACATGGGCAGGTTGGCAACGAGGAGGCCAGATAAGAGAgacaggaagcaggaagtgtCTCCGAAATGGAGAGTGAGAGTGACACCACGTGAGAGGCAAGGACACTGCAATTCCTGTGGCACGCGAGTTCGCTCGAACCATGTGCACCGCAGCAGCCCAGCTCTCCACCCCAAAGCCCAAGGAGCTAAAAACCAAGTCAGATCCATCCTAActaaagagagaaggaaggacaGACAGAAGACGGTGTGGTTTAAAGAGAGTGAGGATTCCTCAGACATCGAAGTGGAGATCATTCCTGATGACATAGGGCTTAAacatgaggaagaggatgaaaaCTCGTCTTCTCTGGCTCTAAAAGCCAGTGATATGGAATTGGGTGAGTTGACTATGATGAACATCCAGGACTTTGACAAGCAGCAGGAAAATGTTTCTGACCACCAAGAGCCACCGGATCCAGACAAAACAGTCCAGTGAATGCCAAGAGGGCTTGGAATCAGTAAACCACATCCCAATAAGACTTAAACCAGTCATTCCTAAGCTGGTATctgggtgattccatgatttgGGTGCCATTTATTTCCCACTGATATTATCCCACTGTCCGAGCCCACTATAGCTACACTTTCatcttaaaatatatattagaatatttcaaaaaacattattatttttattaatgtgtgaatACATTTAACATCTCTTGCGTGAAAAATCCTTTTCCACAAGCCTTTTCCATGCGCCGTCCATTATAGGTtacacattttagttttttctcTCAATTCTGTTACTTgaaaacactctgaacacattcacccctgtgaaatatttggaatattccacaagtaaTATATTCAGGTTGCATAATATGAATTTCCTGGGGATcatggaaagaagaaaagtgcattctctcattcttttttctttacttttaattatGTTGTGATACTGACTGACAAagtcactttgaaagtataaCCCTCTTACCCAAATTACacactgaaagtaaattattatgtaattattagaaatcattcaaatgttatGCTAACCATATTTTGCGTATTTGTGCTAATCCTGTATTCAACCCTGTTGCTTATTTACGAGCAAAATGAGCCATTGACAGCtaagaaaccttgtaaaaatgaCACTGTTGCCTGAGATGGGCTACCACATTTTATATGGTcaaatgttttcttagatttaatgttgaaaaatgacaaaaatttaAGGGCTACATGGCACCACAATCGTGGAATCACCCAAACGTATTCAAGCATTTCTTAATTATGATGAGGTGCAATGCCTTACAAATCTAATTCACTGGTGTCCTCATATGGCAGGGTACTGAGAATCTTTTATCTGtgataaaaatgctgaaaaaatggCCATAATTCACATCCTGACTACAGCTGTAACATGTCATTTAGAAACATGAAAGactaatgtgcaaaaaaaaatagttttgcaGCTATAACAAAAATCATCATTTCTGTTTTGGAGCATTATAACTGCACTAAACATAAGATTTGCACTAAGCACTAATTATGCACTAGAGAATAACTTAATggttgtatttatattttttctgtctaGTATAATTTTTTATTGCTGTGAATAACATTTTGTATACACGAATACACATAAAGACTCtaagaatattttatataaatgtgaaaCTGTTATTGTGGAagtgcaaaaatgaaaaataaagcaagTGAATGTG

Function

NR:

description
cadherin-related family member 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930389.2 True 3433 mRNA 0.41 14 5318352 5325458
XM_026930390.2 False 3412 mRNA 0.41 14 5318352 5325458

Neighbor

gene id symbol gene type direction distance location
trnai-uau_2 NA coding downstream 4098 5314162 ~ 5314254 (-)
LOC113536575 adamts7 coding downstream 16001 5229326 ~ 5302351 (-)
trnai-uau_1 NA coding downstream 27758 5290502 ~ 5290594 (-)
chrna7a chrna7,LOC108270560,LOC108434558,LOC107748270,LOC107679711,LOC107686877 coding downstream 98113 5199143 ~ 5220239 (-)
znf609b LOC108271255,LOC108434576,LOC107679726,LOC107748266,LOC107738902 coding downstream 184802 5081652 ~ 5133550 (-)
sirt3 sirt3,LOC107663051 coding upstream 34960 5360418 ~ 5366235 (-)
LOC113536772 LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636 coding upstream 82138 5407596 ~ 5418681 (-)
nqo1 nqo1 coding upstream 94538 5419996 ~ 5446722 (-)
LOC113536779 LOC108271307 coding upstream 109209 5434667 ~ 5452341 (-)
dpep1 dpep1,LOC107730179 coding upstream 140215 5465673 ~ 5481287 (-)
G176336 NA non-coding downstream 205084 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 471211 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 477659 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 581936 4732382 ~ 4736416 (-)
G175967 NA non-coding downstream 685567 4630348 ~ 4632785 (-)
G176556 NA non-coding upstream 306368 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 757370 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 846740 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 858877 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 935339 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 121534 5139610 ~ 5196818 (-)
G176307 NA other downstream 237457 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 814023 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1321899 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1408459 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 370922 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1531297 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2154964 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2254976 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2350458 7675916 ~ 7764430 (-)

Expression


Co-expression Network