Item | Value |
---|---|
gene id | arnt2 |
gene name | arnt2 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047605.1 |
NCBI id | CM018551.1 |
chromosome length | 26640196 |
location | 9418525 ~ 9529240 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
arnt2 | Enables DNA-binding transcription factor activity. Involved in regulation of transcription, DNA-templated; response to hypoxia; and signal transduction. Acts upstream of or within several processes, including animal organ development; neuron differentiation; and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; mandibular arch skeleton; nervous system; and vasculature. Orthologous to human ARNT2 (aryl hydrocarbon receptor nuclear translocator 2). |
description |
---|
PREDICTED: aryl hydrocarbon receptor nuclear translocator 2 isoform X2 |
id | name | namespace |
---|---|---|
GO:0071542 | dopaminergic neuron differentiation | biological_process |
GO:0048798 | swim bladder inflation | biological_process |
GO:0021591 | ventricular system development | biological_process |
GO:0003208 | cardiac ventricle morphogenesis | biological_process |
GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
GO:0021979 | hypothalamus cell differentiation | biological_process |
GO:0072576 | liver morphogenesis | biological_process |
GO:0001666 | response to hypoxia | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0004871 | obsolete signal transducer activity | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0046983 | protein dimerization activity | molecular_function |
id | description |
---|---|
K15589 | ARNT2; aryl hydrocarbon receptor nuclear translocator 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026930422.2 | True | 5841 | mRNA | 0.44 | 20 | 9418525 | 9529240 |
XM_026930424.2 | False | 5838 | mRNA | 0.44 | 20 | 9418525 | 9529240 |
XM_026930425.2 | False | 5796 | mRNA | 0.44 | 19 | 9418525 | 9529240 |
XM_026930426.2 | False | 5793 | mRNA | 0.44 | 19 | 9418525 | 9529240 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
fah | fah,LOC107662319,LOC107691923,LOC107742310 | coding | upstream | 39974 | 9350196 ~ 9378551 (+) |
zfand6 | zfand6 | coding | upstream | 68616 | 9336647 ~ 9349909 (+) |
minar1 | kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 | coding | upstream | 160528 | 9226447 ~ 9257997 (+) |
adamts17 | adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 | coding | upstream | 228606 | 9039210 ~ 9189919 (+) |
cers3a | cers3,LOC107692405 | coding | upstream | 383071 | 9007369 ~ 9035454 (+) |
abhd17c | abhd17c,LOC107662262,LOC102793890 | coding | downstream | 17506 | 9546746 ~ 9590337 (+) |
cemip | cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 | coding | downstream | 95949 | 9625189 ~ 9754446 (+) |
tlnrd1 | mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 | coding | downstream | 241534 | 9770774 ~ 9774454 (+) |
il16 | il16 | coding | downstream | 262840 | 9792080 ~ 9822229 (+) |
saxo2 | saxo2 | coding | downstream | 722485 | 10251725 ~ 10257578 (+) |
G178763 | mthfs | non-coding | upstream | 85647 | 9320960 ~ 9332878 (+) |
G178764 | NA | non-coding | upstream | 108342 | 9309317 ~ 9310183 (+) |
G178760 | NA | non-coding | upstream | 117187 | 9300994 ~ 9301338 (+) |
G178761 | NA | non-coding | upstream | 118868 | 9299386 ~ 9299657 (+) |
G178741 | NA | non-coding | upstream | 140409 | 9277887 ~ 9278116 (+) |
G178798 | NA | non-coding | downstream | 105519 | 9634759 ~ 9640636 (+) |
G178817 | NA | non-coding | downstream | 221205 | 9750445 ~ 9750713 (+) |
G178834 | NA | non-coding | downstream | 253301 | 9782541 ~ 9782746 (+) |
G178839 | NA | non-coding | downstream | 295206 | 9824446 ~ 9907446 (+) |
G179085 | NA | non-coding | downstream | 544578 | 10073818 ~ 10074017 (+) |
LOC113536578 | NA | other | upstream | 1147775 | 8253421 ~ 8270750 (+) |
trnar-ucg_8 | NA | other | upstream | 1170437 | 8248016 ~ 8248088 (+) |
trnar-acg_6 | NA | other | upstream | 1173501 | 8244952 ~ 8245024 (+) |
trnar-ucg_6 | NA | other | upstream | 1174877 | 8243355 ~ 8243648 (+) |
rpl37a | rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 | other | upstream | 2147205 | 7267831 ~ 7271320 (+) |
LOC113536516 | ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 | other | downstream | 1281430 | 10810670 ~ 10850923 (+) |
G179632 | NA | other | downstream | 1566913 | 11096153 ~ 11098811 (+) |
G179643 | NA | other | downstream | 1631106 | 11160346 ~ 11161597 (+) |
G179758 | psmd1 | other | downstream | 1899373 | 11428613 ~ 11430897 (+) |
G180121 | NA | other | downstream | 2525718 | 12054958 ~ 12055749 (+) |