arhgef18b (arhgef18)


Basic Information

Item Value
gene id arhgef18b
gene name arhgef18
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12239232 ~ 12300910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930449.2
TTGAATGTGTTCTCGATGGCTGATTCTCTCCTCAACCACTCCTGGCCGTCCTTCTCCAAGTTCTGGATGAAACGATGGTCCTTTAAAAGAGCTTCAGAGGGTAAACCATGCACACGGCCAAGCGCTCCGGTCTCAGGGATGAGAGCTTCCTCCTCACCTTCACCTGACAGCTTCCTCAGCAACACATCTGAAGATCAGaGTTCCTGTTTAGTTGAGAGCGATTTCGAGTGCGGGACAGACGACTTATTTGACCTGAACTCTTCTCTGAGAGActctgagtatttcagagacCTGCAGGCCAGACCTGGTGGGGAGTGTGAGCCTTCTGAGAGccctctgtctgtgtttattgaCCCAGGGGACAAAACACAGCTCAGTCCCGGACTATTCTTCTACCCATCACCCATGTTGCACTGTGGATCGTACGTAGAAAATCTCTCACCATCCCACAGTAAGACGAACCTGCTGTCTGATCAGGGAGAGACGATGGAATCGGCAGAGTGTTTGGACGAGCTGTGCATGGACGACTTGGACAGCGCCAGTCTCCCCATCCTGGTCAGGTCTATGTCCACCTCGCGGAGACACAGTTCGGACATCCCACTGAATCCACTCGACCTGGGGAGAAGgtttagtCTGGACACCAGGAGTATAGACAGTGACGGGGAGCGAGATGATCAGAGCCAGTCTCAGAGCTCGGTGGAGGAGTTCGCTACATCCAAAGAAACAGAGCTCACCAAATCCCCACAGCCGCCCACCCCAAGGAGGATGGTGTATTCCCGATCCGAGATTGTGTTGTCAGATGAAAAGTCTCAAGCTGAGAGGGTCTCACGCATTCTGGAAACTTCTAAACAGGCAGCCCGAGCTGCCGGAGAGGAACACTACTCGGATGAGAATTTGCGCTCAGCAGAAGGCCAATGTCACATGGCCAATCGCAGAACATCGAGTCCTGACAGGAAAGAAAATGTCACCTGGTATGAGTTTCTCTCCATTGAgaatgaggaagaggaggaaagagTGGAAAGAGCAGAGAAGGGCACAAAGGTGAAGCGCACTCTGAGCTCACTGAGGAACCGAGTGACCGGATCCTTCAACAAAGACAAGGGTAAGAGCCGTGAAAAAGagcagcagaaagagagagacagagagagggaaaaggagaaagagaaggagaaagagagggaaagggagctgaaggagaaggagagCGCTTGTATGGTTAGCAGCAGCTGTAATGGCCACGAGCTTGTGCGTGGCTCTTTCTCGAGCCGAGCCACGTGCTCACTGTGCAGCAAGACCCTGCAGAGGAAGCATGGTCTgcagtgtgtcaATTGTGCTGTTAACGTTCACAAAAGCTGTAAGAGTCTCCTGCCTGAGTGTAGCAACAGTAAGAACAAGagTAAAGATTTTGCCCAGAAGAGCCAAGCAGCTGCTCAATCCAGTAATCAAGCCTCGAGGGAGCCGTGCCTCGCCTCTGATGGCGCCATCCGCACGGATACAGGCATGACCGTCCTGCCCCGAGGAGCCAGCAGGCAGCAAAACGCTCACAGCACCAACCACACGCTCAGCCACACCAGCAGCTCCAGCTCTATTACAGGGGAGATGGATGAAGTAGACACGTTCAGAGCTAAACGCCACGCTGAGGACACCATCTCCATCACCCCGTCTACTGCCGAGTCCGTCATCGTGGAAGATGCATACTACAACGTGCGAGTGGAGCTGGACTCAATGGCTCAGGACTTTGAGGTGGAGTCGTGGAGTTTGGCCGTGGATCAACACTTCTTAAAGAAACATTCCAAAGAAGTGATTAAGAGACAGGATGTGATAtacgAGCTGATCCAGACAGAGATGCATCACGTGCGTACGCTGAAGATCATGCTGCTAGTGTACGTGCACGAGCTGCGTGAGACTCTGCAGCTGGACGAACGCAGACTGGACTGTTTATTCCCGCAGTTGGAAAGCCTGCTAGAACTACACGGCCATTTCCTGTCCCGCCTCCGAGGGCGACGCCAGGACACGCTGGAGCCGGGAAGCGAACACAACTACGTCATCCACAGCGTGGCAGATATCCTCAGTGACCAGTTTTCAGGTGAACTCGGAGAGCGGATGAAGGAAAGCTACGGCGCGTTCTGCAGTCACCACACCGAAGCCGTCAACTACTACAAAGAGCAGCTGCAGAGCAACAAGAAATTTCAGAACCATATAAGGaaaataaacaacttgtCCATCGTGCGACGGCTCGGCATTCCTGAGTGCATCCTGCTCGTCACGCAGCGCATCACCAAATATCCCGTTCTGGTGGAGCGCATGCTGCAGTACACAGAAGCCAACTCTGAGGAACACACGGAGCTGGCACAAGCTCTGAGTCTGATTAAAAGTGCCATCATGCATGTGGATGCCCAGGTGAGTCTGTATGAGAAGGAGACACGCCTCAAAGAGATCGCCGCCAAGATGGAGCCTAAAGCATTCGGCAAGATTAAAGATGGCCGCATCTTCAGGAGGGAGGACGTGACACAGGGCAGGAGGCTGCTGTATGAGGGCACAGTCAACTGGAAGGCCGCCTCCGGCAGACTCAAGGatATCCTAGCTGTGCTGCTCACAGACGTTCTGCTCCTGCTACAAGACAAGGACCAGAGATATGTTTTCTCTGCTGTGGACGGGAAGCCGTCGGTGATCCTGCAGAAGCTAATCGTCAGAGAGGTGGCACATGAGGAAAAGGCAATGTTCCTCATCTGCGCCTCCTCCAACGAGCCCGAGATGTACGAGATCCACACGTCCTCTAAAGAGGAGCGCAACACCTGGATCACGCACATCCGCCAGGCCGTAGACAGCTGTCCTCACACAGAGCAGAGACTCTTTACTGAAGAGGAGGGAGCAAGACTGCAACGCTTCAGAGAAATTCAAGAGCATCTGACGGTGAAGGACGCTCAGATAAGGCAGGCTCTCAAGGACAAGCTGCAGTTGTATGCCGACCTGGCCGAGTGTGTGGGTATTTTGGAGGACACAGGAGCTCATCGTCATCTTCTGCTGCGGGGAGACACCTCAGAACTCCAGCAGGGGGAGCAGCTGCTCAAGGGAGCCATAACAGAGGTGGAGAACCTACAGAACATTCTGGTGTCCAGTGCGAGAGATCTTCCACAGACAGAAGAGAATCAGAGTTCCAGCTCACTGCCCAGGAGAGCAGGAACGTTCGGGGGCTACGACAGCACCATCAGTTTACTGCAGAAGCaAGGCAGCATGAAGAAACACTCGAATGGAGCAGGAAAGTCCAGGGAGAGAAGTCAGAGAGCTAGTTCCGACCCTCAGCTTAAAGAAATGTGTGCCAGTCAGGGACTGGAAGAGGCTgataaCATTTCTTCACCCAGCTGGAATATGATCTGCTCCAGATTTCCAAACACAGAGTTCTCTGACCGGGTTCTCCTGCTTTCCCAGCGGCTCTACAGTCTACAGGCGATTGTGTCTCAGCAGGACAGCATGATCGAGCTGCAGCGGGCATCTCTGTTCTCGGCGGAGCGCCAGCGAGGCACGGACGTACTCCTCGAGCAGGAGAAACAGAGGAACCTGGAGAAGCACCGTGAGGAGATGGCTCATTTCCAGCGTGTCCaggcacagcagcagcaggagcaagAGCGCTGGGAGCGTGATCGAACGAAGCAGTTGAAACAGAACGAGGCTGAGCAGCTTCGGCTGCAGGAGCGAGAGGACGCGTGCAAGAAGCTGGAGGAGAGACTTGCCCAGGAGAGACAGGAGCTGCAGAACCAGAGGCAGAAGTACCAGCAGGACCTGGAGAGATTACGAGAATCCACGCGGGCTGTAGAGAAGGAGCGAGAGAAGCTTGAACAGCAAAGGAAAATGAAGAAACGCCATACGGCACCCAACACGGCAACAACTTATGGCCATGACACATCGCAGCTCACCATGTCCTCCAGTTTTAATGGTGACATCCTGGGAAACTCTGGAACGGATTCGATCCCCCCGTCCCTCTCTCAGCTCCGCCCCACCGTCTCGTTATCTACTGCTGATTACTCCGATAGGATAGACGTGCCGCCGCGCCGGGAGAGTGGCACCGCCGTGCCCGCCAAAACCGAGGTGCCCATCCACCTGGTCAGCGCCACCAACCAGCTGCACAAACAGGGCGGAGTCCAGCAGCAGATCCCCACCAAGCTCGCCACACTGAAGAGCAAGGACAAGAGCACCAAAAGCAAAGGCTCACATCGCACAGAAAGCTCAGCTTCAGTAGACATGAAGCAGAAGCTGTCGAAACTGTCGtccagagaaacagagagtTCTGTAAAAGCTCGTCGCTCCATCAGTCCTCATCAGCAGCCTCAACTTGCTCCGCCTCCAGTTACAGATGTCCACATCATTGGAGACAAATATACCCCTGAGCCTCTGAGCCTCCTGCACTCCTATCCTCTCCCTGACGACAAAGACAAGGAGGACGTCGTCTTTTTCTGAGtgtctcagtgcatgctgggatatGCCACATgcctcagtgcatgctgggatgcGCCACACAGAGCTTAACAAGAGCAACAAGAGTTTTTACCATTTTAGCTGcctggaggaaaaaaatctcacactttaagatttcctttttaattattGCCAATAGATTTTTCCTACCTTTCAGTAGAAGAACCGGATAAATGAAGAGGATAAAGAAGTTTTTAGTGGAAGAAATTAAATCTCAGAGGAACATCTGGGACAATCCAAAGGCCAGTGGAAGCATGAGGAGCAGCATGAGgtgactgaaatgaaatgaaggatGTGCATGAACAGGGATGAGCTGTGTGTGCACTTAACTCCAAAccttatttctagaaaaaacTTTACGGAAGGATTTTTTGGTGTGTCGCAGAtcagaacagaaagaaaaaaaaagcacaaattttCAGATGAGTGAGTGCTGTTTAAGAAGGAAGCTGTTTATCATGCTAGGACTTCATTTCACTGTTGGGCTGAGAATTAATGCGTCACTTTTTGTATTGATTGTCAAGTTTATTGATTTTTAGCCTGCACAATATAAAGCGCTCGTCATATTAGATTATATAAAACAATGAAATCCAACAAGTTATCTTAAAACCTGCCATGTTAATACCCTTCCTGAAATCTTTttattatcaaataaaatagatttattagtaataattaGGGCTGCATCGATCAAATCAGGCTGATAAAATCCTTAAACCCTGGATTgatattttggcttttttttttttttttttagatcttaGACTTTAGACtctgatatttaaaataaacaaatactatTATTAATGTTGAAGTTGGAATGCACTGATACAATACTGATCCTATATACTGAATCGATATCCAATCAAATCTATTGTCATTTTCCAATTTAATCTATTGATTAGTTTGAGTACATTTAACACAGCAACATCTTTGAAACAAAATATCAGCTGATAATCAGAGCtctaaatattgaaaatatatttttgcctGAGTTATACTAACATTGTCTTTATGAAGATGTTCCTTGTTATGGATAAGTACTACTGAATGGATGTTAACATGGTGGCTGGAACACAATACTTACCTTCAGGGCATGTTAAGTTTGTCAGCTTCatcttctgtttctctcagtgCCAAACGGATCAAACAGTCGAGGATCAGACTTGTGCCTCTCTGTGCTTTAATGATGTGTGCACTGAGAGTGAGCTCATTAAACACATAATGCATGCTGACGAGTGCAGATGAAGActctgaaatctgaaaaatatgtgcatgtgtgcgcaCACTTTCCTTATTTAACATCTACATTTAAGCTTTTCACAActtttttcagtaatattttcttttccagCTGCTGTTGGATCAAACAGGAAACTAAAGTTCACTaagctgattttttaaaaatgtatttatttattttattttgcgaCACACAGCATCACGACTCGAATCGAATCAGCTTGATTAGAGAGGGACATGCTgttgaaaattgaaaatatgGACAGCCAATGAAAAAGTGAAGATACCAGAAAATAACACACTGAAGGTGGTGCTGAAGAATTCATGAAATGAAGGATAGTgtgttatttcctttttttttttttattggttcaattttttttatttttaattttttttaattgcttacaCCATGGCCGTGAAGTAGAGCATGGGTTGTCCACTGATGTGGACCCAACAAAGTGTTAATTGTGTTAATTAATTGACTTGAACTGAGCAGTCGAAATATCCGGAAATCTGACCATAAATCAGCTTTCAAACCGTGAACCATCACAGTTACTCTGTTGcagccaattaaaaaaaaagaaaacaattaaatcattaaaaaatggcACCTGTTAGGCAATCAGAAGCGAGTAGTTTGTGTCAAGTAAAAACAATATCTTACCGTTATACTGTTACTGCTATGGCTACGTCTTGTCTTAATTTGTAACATTTCCATGCtctataaatcattattttctgtGCAGTTAAACAATATTTCTTTGTGTAACAGCACATTAATGAAGTGTAAatggttgtcatggttacatacTAACAAGGTTACATAGTATGTGGAAACCCTGATTTAGAACTGATGTAGATTAAATAACAGCACCTGAtagccaatcagaaacgagtATTTTTTGGCCAGTGAAAATGAGTTTGCTACGACGGTACTGTTGCTACTTTGGTTACATATCAGAATCATTTGCAATTCAATTGCAGTTTAATTGTAATATAAacgtattttttttgtttaacagcCCATTAGTGATGCATAAatggttgtcatggttacattccAGCACGATTACAGAATATCGGAAGCACTGATTTAGAACTGatctatgtttaaaaaaaaaaacagcacctgTTATTCAATCAGAACTAAGTGTTTTTGTGGCCATGGTGAAAGTTTGTaatttgatgtgttgtgatCATTTCTATGCCTTTCTTTTTTGCACACTTCATTGTGTGAATCTCAGACTCGGATGAATCTTACAGGATGTGAAATCCGAACATCTCGACTCACGCTAAAGAACTCCCCCGTGATCAGAGCTCACACTCTGGAAAGAGATTTGTATATTTGCTGTTTGAACTACTGCAGAGTGCGGGGTCTCCATGTATGAGCTGGAGGTTtcactgtgtaaatattgtacaTATGATGTAGATTTCATGCTGTGATGTCTTATATGATGTCCAACGGACTTTAGCGCACATTTTTCATGAAGTAAGGGAATGAGATCCTTCGTCGCAAAAAAGACAAATGCTGTAATTCTTCCTAGACTATCAGTTATTGTACTTTCTCCTATGTGGCATTGACAGatctgttttaatcagaaatgaaGCCTTATTCTAAGATCGTCCTTTAGTGAGGAACCAAAGATTCACTCCGAGACTGTAACAGCACCGTGACTGTATCATTTCCTCTcaactgtaacaaaaaaatctctctcAGTTCTCTCATGACCACTgtgttaaagttttaaaataatcctCCTTTACCAAGTTGTAATGTTTCCTTTTATTCGGAGATGAAGTGGTTTATTCagccatgtctttttttttttcgtctacCGTGACGCTGTGCTCTGGTATAGCACCTTTTCctgtaatttgtttaaaaaaaaatcttcattgCCAATTACACTAGTCACTTTTAGTAGGGAACTTGACGAGGAGTGTGAATGTGGCGTTTTGTGTGCTTGTatttttccagatgtttttCCAGATGTTTGTAGCACGCAGGACCACTGTGATTATTTTCTACTTAGTATATTTTACTCACAAAGAAATCTAGCTGTAAGACACAAAAAACACCTTAGAGACGTTTCCATTTtagtaataaaacatttgatgGTG

Function

symbol description
arhgef18 Enables guanyl-nucleotide exchange factor activity. Involved in negative regulation of stress fiber assembly and protein localization to cell-cell junction. Acts upstream of or within actin cytoskeleton organization; regulation of cell shape; and small GTPase mediated signal transduction. Located in apical part of cell; cytosol; and plasma membrane. Implicated in retinitis pigmentosa.

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 18-like isoform X1

GO: NA

KEGG:

id description
K21066 ARHGEF18; A-kinase anchor protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930449.2 True 7839 mRNA 0.46 31 12239232 12300910

Neighbor

gene id symbol gene type direction distance location
insrb insr,LOC108271075 coding upstream 5413 12154268 ~ 12233819 (+)
use1 use1,LOC107756022 coding upstream 91373 12139593 ~ 12147859 (+)
LOC113536486 myo9b coding upstream 103364 12073244 ~ 12135868 (+)
cers1 cers1,LOC107718480 coding upstream 219732 11996456 ~ 12019500 (+)
kng1 NA coding upstream 247116 11985422 ~ 11992116 (+)
sass6 sass6,LOC107756018 coding downstream 55085 12355995 ~ 12369777 (+)
trnag-ucc_15 NA coding downstream 87260 12388170 ~ 12388241 (+)
trmt13 trmt13 coding downstream 173023 12473933 ~ 12479769 (+)
LOC113536408 LOC108271398 coding downstream 183213 12484123 ~ 12487609 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding downstream 196941 12497851 ~ 12507903 (+)
G180144 NA non-coding upstream 52262 12181015 ~ 12186970 (+)
G180132 NA non-coding upstream 176322 12062559 ~ 12062910 (+)
G180122 NA non-coding upstream 185620 12053272 ~ 12053612 (+)
LOC113536506 NA non-coding upstream 186082 12045804 ~ 12053150 (+)
LOC117598401 NA non-coding upstream 201776 12032000 ~ 12037456 (+)
G180192 NA non-coding downstream 91977 12392887 ~ 12393491 (+)
G180205 NA non-coding downstream 121792 12422702 ~ 12423152 (+)
G180242 NA non-coding downstream 185596 12486506 ~ 12486744 (+)
G180246 NA non-coding downstream 195821 12496731 ~ 12497651 (+)
G180267 NA non-coding downstream 352886 12653796 ~ 12654215 (+)
G180121 NA other upstream 183483 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 808335 11428613 ~ 11430897 (+)
G179643 NA other upstream 1077635 11160346 ~ 11161597 (+)
G179632 NA other upstream 1140421 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 1388309 10810670 ~ 10850923 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 27142 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 211978 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 272247 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 795463 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 935567 13236477 ~ 13239637 (+)

Expression


Co-expression Network