mccc1 (mccc1,LOC106613934)


Basic Information

Item Value
gene id mccc1
gene name mccc1,LOC106613934
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11958278 ~ 11973216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930461.2
TACGGTTCGCCGTCAGGGTCAATCCGTacacatttgcattttgttattacctgtatttatttataagttttTAAGACACTTGCTAAaggtaaatatttgaataaagtATCATATAATACAGtgatattattatgtaatatgaAATAATTCATTACAAAGCAACTATTTGTTTTAGTTTGGAATATTTAACAGTTCGGTTAGCTAAGGTAAGTTAGCCTAGCTAGCCGGTGGTCGTTCACTCGTTGTAAAAATGGCTGCTGCTGTCCTGCAAGTGCGAGTCAACCAGGCTCTGAGAGCACAGCTACAGAAGCTGATATGGAGCAGAGGAGCAGTGAGACACGCGTCTGTGGGGAGGATAGAGAAAGTCATCATTGCTAACCGAGGAGAGATAGCATGCAGAGTGATGCGCACAGCGAAAAAGATGGGTATTCGTTCTGTGGCTGTGTACAGTGATGCTGACAGGCACTCCATGCATGTGGCCATGGCAGATGAAGCGTACCATATCGGAGCAGCACCGTCACAACAAAGTTATTTATGCATGGAGAAAGTTCTAGAAGTTGCCAAGAAATCCTCGGCACAGGCTGTCCACCCTGGATATGGCTTCCTGTCTGAGAACACAGAGTTTGCTGAACTGTGCAAACAGGAAGGCATCATCTTCATCGGGCCTCCATCGTCTGCGATTCGTGATATGGGCATCAAGAGCACGTCCAAACACATAATGTCTGCTGCGGGCGTTCCCATCATTGAGGGTTACCACGGTGAAGACCAATCAGATGAGAAGCTTCAAGCTGAAGCTGCCAGGATTGGTTATCCTGTTATGATCAAAGCTGTACGAGGTGGAGGTGGGAAGGGAATGCGTATTGCTCGCTCGGAAGCAGAATTTCATGAGCAGCTGGAATCTGCCAGAAGAGAAGCTCGGAAATCGTTCAATGATGACGTCATGCTGGTGGAGAAGTTTGTGGACAACCCCAGGCACGTGGAGGTGCAGGTGTTTGGGGATCAACATGGTAATGCTGTGTATCTGTTTGAGAGAGACTGCAGTGTGCAGAGGAGACACCAGAAGATCATAGAAGAAGCACCAGGGcCTGGTATTAGTCCTGAAGTGAGGCGTAAACTGGGAGAAGCCGCTGTCCGGGCAGCTAAAGCAGTAAACTATGTTGGAGCAGGCACTGTGGAGTTCATCATGGATGCTCAGCACAATTTCTACTTCATGGAGATGAACACTCGTTTGCAGGTGGAGCACCCCGTGTCTGAGATGATCACTGGTACAGACCTGGTGGAGTGGCAGCTCAGGGTGGCCGCTGGAGAGAAGCTTCCTCTCTCTCAGGATGAGATTGTGCTCCGAGGTCACTCGTTTGAGGCTCGAATCTATGCTGAAGACCCCAATAACGACTTCCTGCCCGGAGCCGGACCCCTGCTGCACCTTTCCACACCACaggaggagacacacacacgcatcgaGACCGGAGTACGGCAAGGAGATGAGGTTTCGGCTCATTATGACCCCATGATTGCCAAGCTGGTGGTTTGGGGAGAGGATCGCTCAGCTGCTCTGAAGAAACTGCGCTACTGCTTACGCCAGTACAATATTGTGGGTCTCAACACCAACATCGATTTCCTGTTAAGTCTTTCGGGTCATGCGGAGTTTGAGGCGGGAAACGTTCACACCAGCTTCATCCAGCAGCACTATGATCAGCTGTTTCCCAAACCGACTGCACTGGGAGGAGACGTGCTGTGTCAGGCCGCCCTTGGACTTCTGCTGCaggagagagaacacacactggAGTTACTGCACCAGTCACATGACATGTTCTCTCCTTTCGGCTCGGGTAACGGAAGCCGGCTCAATGTGCTCTACTGCAGGAACCTGACACTACAGCTGGGGGAAAACAAAGTTACAGTAGCTGTGACCTACAATCCAGATGGGACGTACAGCAtggagactggaGGCCAGGTGTTCCAGGTGTCAGGTGAGCTGCAGAAAGTGGGCGAAGCCACATACCTGCGCTGCTCTGTGAATGGAGTCCTGTCTCAACCCAAACTGGTCATACTGGACAACGCAGTTCATCTGTTCTCCATGGAGGGCAGTGCAGACGTGAAAGTGCCTTTACCAAAGTTCTTGGCTGGTGTGAGTTCTTCTGGGGCACAAGATGGCGCTGTGGCACCTATGACTGGAACCATTGAGAAGGTCCTTGTGAAGGTCGGAGATGCCGTGCAGAAGGGAGATCCTCTCATGGTGATGATCGCAATGAAGATGGAGcaCACGATCCGAGCTCCTAAAGCAGGTGTCATTAAGAAGGTCCTGTTTAAAGAAGGTTCACAGGCCAATCGTCACGCAGCACTGGTGGAAATGGAAGAGGAACAGGAGGAAGCGGCACAATCATGAACAGAGAGCGAGTGTTTCTCTGATAGACTTGACATGTACAGTCCTCGGTTACTAACTCGAGTTCTTCAGCATTGTAAAGTGACATCATGGCTCCGTGTAAATGACAGGAACTCTTATTGTTAGTGTTATTAGTTACTGTTCTCTCAGAGATCctgattttatattaatgtaacCCAAGGTTCAACACTAATGTTTAACTGTTGTTTTctgatatttgtttaaaaaaaaaacctaaaagaaaccttggtttcttttcttttctgcacAAACCCTGCGTTAGTGTTTCTcacatgggattttttttggtgttgtatCATTTCGTAGCTTTTTCCCTCCCTGGTGTACAATTATCTTTTGTTGCCATGCtcataaaaacaacaaacattcagaaatacatagcagatattttttttcctgaacagtAAGAGGTTTACATAGTAgggatttcttttctttttttaaaaataataaaaaaaatttaatattttattgcaatTTAGGATTTGTCATTTGGAACATGGTCAGTCGTAATGATTCATCATTCGGCACATGGCCATGCAGTCAGTCGTAACGACTCGTCGTTCTGAAGGGGGTCAGTCGTAAACATTCGTCATTTGGAAGACGGTCAGTCGTAAAGATTGGTTATTCAAACACACTGCTCATCAACaaaaaagagggggaaaaagtcTTTATGCATAAACCCCATGTGtacaatacagtattttttaaaaacagttttattttctgtaaatagaATTTCCATAAACAGCAGTTGAACACTTTCACTGTTAGGACAGGACGATTACAGTAACACACGTTGCTgacattgttttttctttaaatggaAAAGGATGGAAATGAACCAGGAAATGAAGCTCTGGCCTCACAGCCGGAGTGGACGATCCCTGGTCCAGAAATTCTTATTGCTACTGTCTCTGACAACCACACACACGCGCTGAGCGATCAGTGTATTAGCTACAACACTGTAGTCACTAATAACCTGGCAGCTGAGTGTGGATATTTTGACATGAATGGGGCCGGTTGTTGATGATGCCCTGTGTGTTCCCTGACATAAAAATTGATTTAACAAACTAACCAAGAAGTATGTAACTGacagaaaaataattacaattccTCTTCTGATA

Function

symbol description
mccc1 Predicted to enable methylcrotonoyl-CoA carboxylase activity. Predicted to be active in mitochondrion. Is expressed in liver. Human ortholog(s) of this gene implicated in 3-Methylcrotonyl-CoA carboxylase 1 deficiency. Orthologous to human MCCC1 (methylcrotonyl-CoA carboxylase subunit 1).

NR:

description
PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function

KEGG:

id description
K01968 E6.4.1.4A; 3-methylcrotonyl-CoA carboxylase alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930461.2 True 3531 mRNA 0.46 19 11958278 11973216

Neighbor

gene id symbol gene type direction distance location
sox2 sox2 coding downstream 212443 11742948 ~ 11745835 (-)
LOC117598431 NA coding downstream 436658 11520119 ~ 11521620 (-)
LOC113536618 LOC108271381 coding downstream 476769 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 482310 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 720469 11196039 ~ 11237809 (-)
LOC113536502 NA coding upstream 465 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 89779 12062995 ~ 12065799 (-)
enc3 enc3,LOC108270871,LOC108430247,LOC107593050,LOC107731329,LOC107755983,LOC107695631,LOC105900972 coding upstream 338390 12311606 ~ 12324367 (-)
tmprss9 tmprss9 coding upstream 360986 12334202 ~ 12353009 (-)
lsm7 lsm7,LOC107593053 coding upstream 379929 12353145 ~ 12355924 (-)
G179972 NA non-coding downstream 180533 11728277 ~ 11777745 (-)
G179827 ttc14 non-coding downstream 395935 11558919 ~ 11562343 (-)
G179727 NA non-coding downstream 762605 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 1378818 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 1382246 10574536 ~ 10576032 (-)
G180111 NA non-coding upstream 22954 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 80065 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 100053 12073269 ~ 12074531 (-)
G180277 NA non-coding upstream 102022 12075238 ~ 12084317 (-)
G180273 NA non-coding upstream 201646 12174862 ~ 12300865 (-)
fxr1 fxr1 other downstream 69129 11862989 ~ 11889149 (-)
LOC117598402 NA other downstream 426245 11527957 ~ 11532033 (-)
LOC113536577 NA other downstream 439884 11510846 ~ 11518394 (-)
LOC117598430 NA other downstream 454316 11491707 ~ 11503962 (-)
G179803 ncl other downstream 538232 11409092 ~ 11420046 (-)
ncln ncln other upstream 47196 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 744145 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 778862 12752078 ~ 12782535 (-)
rpp21 LOC108271386 other upstream 1266507 13239723 ~ 13243200 (-)
ptprsa ptprs,ptprd,LOC107559826,LOC107679075 other upstream 1573698 13546914 ~ 13783127 (-)

Expression


Co-expression Network