sass6 (sass6,LOC107756018)


Basic Information

Item Value
gene id sass6
gene name sass6,LOC107756018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12355995 ~ 12369777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930462.2
TAGCAGGTAGCAGGTTTAGCTTGTTAGCCACTAGTCAGGATAGCCTGGTTAATAAAGCTAATTTTAATAGTACCAAAAACGATTTTTTCCCACGTCACAACATCCACCCAACACTTTTTCCCACAAATAACACCAGTATTTCTCCTCAGTAGTCTGAATACGTGGCTCAAATAGCACACTCAGAGCGAAGTGCTCACGGCACGACACTAGAAGGCGGATTGGaacatctccatctccatgtTCATGTTGACGCTTCGTCACTTCCGGCTTTAGCGGCCATTAGCGGGAGGCGAAGCGCCAAACTCGAAATCTGCCGTTGACACACAAAATCTGTTGCCTAAAGTTGAACCAGAAATACGCTGGTgcattatttatagttttttattttttgatgtaAAACAGAAATGACGGAATTGCTTTTTAACAAGACGTTGCAAGTGTACGTGAAGTGTAAAGACTGCGATGACAGGCGAACAGTTATCAGAGTCAGTATTGAACTGCAGCTCATTTCAAACCCCATCCACAGACGGgatttGGTTGTGAGGCTGACCGACGACACTGATCTCTACTTCCTGTATAACCTCGTCATATCAGAGGAGGATTTTCAAAgCTTGAAAGTCCAGCAGGGTCTCCTGATAGACTTCACCGCTTTCCCTCAGAAGTTCATAGACCTGTTAGAACAATGCATCTCCGAGCAGAGCAAAGAAAATCCAAGGTTCTTGCTGCAGCTTTCCTCCCCGTCGTCTGCACTAAACCACGGCTTTGCTAATCTGAACGTCGTGGAGACCAACGCCTTCAAGCACctcacacacctgtctctcAAACTGCTCCCTGGCTCAGAtgtggaaataaagaaatatctGGCTACCTGTTTGGCCACGATAAAGGAGGAAAAGGAGCAACTCCAGCAAAAACTAAAGAAGACTGAAGAGGATCTGACTAAGCAGCTAAATTATGCACAGCAGacGTTGTCTGAGAAGAGCCGGGAACTGGACAAACTGCGCTCTGAATGGACGTCACAAACGACCTCGTTGTCCAGCAGACATACGCAAGACCTCACAGCAGAGCGTGAAAAAGCTCTGGAGATCCAGACGAGGCTGCAGCAGCAGAATGAACAGCTGAGGCGCGAGCTGGAGGCGACTCATCAGCGCAGCACGCAACAGCTTCAAACCCGGCTCTCCGAACTGGAGACCTCCAACAGGGAGCTCACGGAGAAAAAGTACAAAAGCGACTCCACCATCCGAGACCTGAAGGCCAAACTGCTCGGCCTTGAGGAGGAGTCTCAGAGGGCGAAGCAGCAGGTGGCGTCTCTCCGGAGGGAAAACAGCACCCTCGATACAGAATGTCATGAAAAAGAGCGACTAGTTAATCAGCTGCAGACTCGAGTAGCCGTGCTTGAGCAGGAGATTAAAGACAAAGATCAGCTCGTTCTCCGAACCAAAGAGGTGCTCGAGGCCACGCAGCAGCAAAAGACCTCTGTTGAGGAAACTGCTGAGAGTAAACAGCTACAGATTGGAAAGTTGGAGTCGACAGTGAAATCCTTATCTGAGGAGCTCATAAAGGCGAACGGCATCATTAAAAAGCTACAGGGTGATCTGAAGGCTCTGGTGGGGAAGATTAAAGTGAAGAACACGGTGACTGTGTCTCAGGAGAAAGTGCTGCAGGAGACGACGGAACGACTGCAGAGGGAGCAGAGGGAGTTGCAGGACATGCAGCACAGACTGAGGCTCAAAGAGGACGAGGTCTCAAAGTTAAAGGAGCAGTTGGAAGCCACAGTTAAAAAACTGGACGAGAGCAGAGAGGTGCTGAAAACTAATGAAAACGTGATAACGTGGCTGAATAAGCAGCTGAATGAAAACCAGCTGTCCAGGAAGCAGGACACTGTTGGTGTGTTTGAGACTCCGCAGCCTGGTGCTGGACTGAGACTTGCTCCTGCTTCTCACAACATGCTTGATAGTAAGACTTTCCCCTCCCTGGGCCAGCCGTATCCTGTAACCTCCACGTTAAACTCCAAGCACTCATTCCCTCTGTCATGTGTGAGCGCTGGACCGCGTTCTGTCCTCACTTTACACAATCCCAACCCAGGACCAAAGGTCCTGTTTAACCCGATGAGTGCCAAAGCCAGCATGTCTCCGGTGGAAGGGAATGGAAACCCAACAGCACCACAGTCTTCCTCCAATAAGGAGAACGGGGAGCCGCTGGGGTTGGACTCAAAATACTTTGAGAGACGAGATGAGAGCATCCCTCTGCGTGGCCTGGTACCCAGCATGCACCTGAACAAAGAAATCACTAAACCCTCCTCCACAAAACCCACAGCTCCATCAGCATATTTCCCCGGATGATATCCTTCTTCATGTTTTTTCCACTACCAGTGTGTAAGGAGCACCAACCCTCAGGAGCTTCTGCACATCTCTGTCATGTGTTAAGTGCATTATGCTtctcaaattatttattaaacactgttttttaaCCATTGATGGATTGGTTTGCAGCTGAGTGGTTGTGCACACAggaattttttcattttgtttgaatgAAAAACGTTTACAGGTGCTGAAATATGTATGGTGCTAAAAATATGTGTGAGTACATAAACATAACTGATGTTGCGAGCGAATGGGCGGATGAAAGACCATCCAGATCGCAATAAGAATTAAACATGTTGGTATAATGCATTTCCAgtaggcatgtgccgataatCATATTTAGTGCTATTGTTGACGCTTCAGGTTTTCACTAATCTACAAAGCCTGtctagaaaatgttttttccccttacagTGCTTTTAAGCAGCAATTTTGATGGAACATCTCGTGTCATAGTGCTATTGAGTGGAGGAGACATAGCAGACAAAACAGCAATATGAAAGATTAATATTGGCACATGTCTAATTTCCACTGATGGGTCATGAGTTTTAAATCAGTGCGAGTGTGTTGTTGTGATTGTATATAAGTTGTATATAAAGTCTACATGAGAATCTTCATCTATGACAGTGATGTACTGTACTTAGAGCcttgatttaataaataatttttcttaaaACCA
>XM_026930463.2
AGTAGCAGGTAGCAGGTTTAGCTTGTTAGCCACTAGTCAGGATAGCCTGGTTAATAAAGCTAATTTTAATAGTACCAAAAACGATTTTTTCCCACGTCACAACATCCACCCAACACTTTTTCCCACAAATAACACCAGTATTTCTCCTCAGTAGTCTGAATACGTGGCTCAAATAGCACACTCAGAGCGAAGTGCTCACGGCACGACACTAGAAGGCGGATTGGaacatctccatctccatgtTCATGTTGACGCTTCGTCACTTCCGGCTTTAGCGGCCATTAGCGGGAGGCGAAGCGCCAAACTCGAAATCTGCCGTTGACACACAAAATCTGTTGCCTAAAGTTGAACCAGAAATACGCTGGTgcattatttatagttttttattttttgatgtaAAACAGAAATGACGGAATTGCTTTTTAACAAGACGTTGCAAGTGTACGTGAAGTGTAAAGACTGCGATGACAGGCGAACAGTTATCAGAGTCAGTATTGAACTGCAGCTCATTTCAAACCCCATCCACAGACGGgatttGGTTGTGAGGCTGACCGACGACACTGATCTCTACTTCCTGTATAACCTCGTCATATCAGAGGAGGATTTTCAAAgCTTGAAAGTCCAGCAGGGTCTCCTGATAGACTTCACCGCTTTCCCTCAGAAGTTCATAGACCTGTTAGAACAATGCATCTCCGAGCAGAGCAAAGAAAATCCAAGGTTCTTGCTGCAGCTTTCCTCCCCGTCGTCTGCACTAAACCACGGCTTTGCTAATCTGAACGTCGTGGAGACCAACGCCTTCAAGCACctcacacacctgtctctcAAACTGCTCCCTGGCTCAGAtgtggaaataaagaaatatctGGCTACCTGTTTGGCCACGATAAAGGAGGAAAAGGAGCAACTCCAGCAAAAACTAAAGAAGACTGAAGAGGATCTGACTAAGCAGCTAAATTATGCACAGCAGacGTTGTCTGAGAAGAGCCGGGAACTGGACAAACTGCGCTCTGAATGGACGTCACAAACGACCTCGTTGTCCAGCAGACATACGCAAGACCTCACAGCAGAGCGTGAAAAAGCTCTGGAGATCCAGACGAGGCTGCAGCAGCAGAATGAACAGCTGAGGCGCGAGCTGGAGGCGACTCATCAGCGCAGCACGCAACAGCTTCAAACCCGGCTCTCCGAACTGGAGACCTCCAACAGGGAGCTCACGGAGAAAAAGTACAAAAGCGACTCCACCATCCGAGACCTGAAGGCCAAACTGCTCGGCCTTGAGGAGGAGTCTCAGAGGGCGAAGCAGCAGGTGGCGTCTCTCCGGAGGGAAAACAGCACCCTCGATACAGAATGTCATGAAAAAGAGCGACTAGTTAATCAGCTGCAGACTCGAGTAGCCGTGCTTGAGCAGGAGATTAAAGACAAAGATCAGCTCGTTCTCCGAACCAAAGAGGTGCTCGAGGCCACGCAGCAGCAAAAGACCTCTGTTGAGGAAACTGCTGAGAGTAAACAGCTACAGATTGGAAAGTTGGAGTCGACAGTGAAATCCTTATCTGAGGAGCTCATAAAGGCGAACGGCATCATTAAAAAGCTACAGGGTGATCTGAAGGCTCTGGTGGGGAAGATTAAAGTGAAGAACACGGTGACTGTGTCTCAGGAGAAAGTGCTGCAGGAGACGACGGAACGACTGCAGAGGGAGCAGAGGGAGTTGCAGGACATGCAGCACAGACTGAGGCTCAAAGAGGACGAGGTCTCAAAGTTAAAGGAGCAGTTGGAAGCCACAGTTAAAAAACTGGACGAGAGCAGAGAGGTGCTGAAAACTAATGAAAACGTGATAACGTGGCTGAATAAGCAGCTGAATGAAAACCAGCTGTCCAGGAAGCAGGACACTGTTGGTGTGTTTGAGACTCCGCAGCCTGGTGCTGGACTGAGACTTGCTCCTGCTTCTCACAACATGGTCCTGTTTAACCCGATGAGTGCCAAAGCCAGCATGTCTCCGGTGGAAGGGAATGGAAACCCAACAGCACCACAGTCTTCCTCCAATAAGGAGAACGGGGAGCCGCTGGGGTTGGACTCAAAATACTTTGAGAGACGAGATGAGAGCATCCCTCTGCGTGGCCTGGTACCCAGCATGCACCTGAACAAAGAAATCACTAAACCCTCCTCCACAAAACCCACAGCTCCATCAGCATATTTCCCCGGATGATATCCTTCTTCATGTTTTTTCCACTACCAGTGTGTAAGGAGCACCAACCCTCAGGAGCTTCTGCACATCTCTGTCATGTGTTAAGTGCATTATGCTtctcaaattatttattaaacactgttttttaaCCATTGATGGATTGGTTTGCAGCTGAGTGGTTGTGCACACAggaattttttcattttgtttgaatgAAAAACGTTTACAGGTGCTGAAATATGTATGGTGCTAAAAATATGTGTGAGTACATAAACATAACTGATGTTGCGAGCGAATGGGCGGATGAAAGACCATCCAGATCGCAATAAGAATTAAACATGTTGGTATAATGCATTTCCAgtaggcatgtgccgataatCATATTTAGTGCTATTGTTGACGCTTCAGGTTTTCACTAATCTACAAAGCCTGtctagaaaatgttttttccccttacagTGCTTTTAAGCAGCAATTTTGATGGAACATCTCGTGTCATAGTGCTATTGAGTGGAGGAGACATAGCAGACAAAACAGCAATATGAAAGATTAATATTGGCACATGTCTAATTTCCACTGATGGGTCATGAGTTTTAAATCAGTGCGAGTGTGTTGTTGTGATTGTATATAAGTTGTATATAAAGTCTACATGAGAATCTTCATCTATGACAGTGATGTACTGTACTTAGAGCcttgatttaataaataatttttcttaaaACCA

Function

symbol description
sass6 Acts upstream of or within several processes, including embryonic cleavage; microtubule cytoskeleton organization; and spermatogenesis. Located in centrosome. Is expressed in blastomere and unfertilized egg. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051298 centrosome duplication biological_process
GO:0040016 embryonic cleavage biological_process
GO:0000280 nuclear division biological_process
GO:0098536 deuterosome cellular_component
GO:0005814 centriole cellular_component

KEGG:

id description
K16487 SAS-6, SASS6; spindle assembly abnormal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930462.2 True 3045 mRNA 0.46 17 12355997 12369777
XM_026930463.2 False 2903 mRNA 0.46 16 12355995 12369777

Neighbor

gene id symbol gene type direction distance location
arhgef18b arhgef18 coding upstream 55085 12239232 ~ 12300910 (+)
insrb insr,LOC108271075 coding upstream 122176 12154268 ~ 12233819 (+)
use1 use1,LOC107756022 coding upstream 208136 12139593 ~ 12147859 (+)
LOC113536486 myo9b coding upstream 220127 12073244 ~ 12135868 (+)
cers1 cers1,LOC107718480 coding upstream 336495 11996456 ~ 12019500 (+)
trnag-ucc_15 NA coding downstream 18393 12388170 ~ 12388241 (+)
trmt13 trmt13 coding downstream 104156 12473933 ~ 12479769 (+)
LOC113536408 LOC108271398 coding downstream 114346 12484123 ~ 12487609 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding downstream 128074 12497851 ~ 12507903 (+)
LOC117598419 gpr88 coding downstream 195441 12565218 ~ 12566601 (+)
G180144 NA non-coding upstream 169025 12181015 ~ 12186970 (+)
G180132 NA non-coding upstream 293085 12062559 ~ 12062910 (+)
G180122 NA non-coding upstream 302383 12053272 ~ 12053612 (+)
LOC113536506 NA non-coding upstream 302845 12045804 ~ 12053150 (+)
LOC117598401 NA non-coding upstream 318539 12032000 ~ 12037456 (+)
G180192 NA non-coding downstream 23110 12392887 ~ 12393491 (+)
G180205 NA non-coding downstream 52925 12422702 ~ 12423152 (+)
G180242 NA non-coding downstream 116729 12486506 ~ 12486744 (+)
G180246 NA non-coding downstream 126954 12496731 ~ 12497651 (+)
G180267 NA non-coding downstream 284019 12653796 ~ 12654215 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 22314 12328052 ~ 12333681 (+)
G180121 NA other upstream 300246 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 925098 11428613 ~ 11430897 (+)
G179643 NA other upstream 1194398 11160346 ~ 11161597 (+)
G179632 NA other upstream 1257184 11096153 ~ 11098811 (+)
cdc14ab cdc14a other downstream 143111 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 203380 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 726596 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 866700 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 880593 13250370 ~ 13250441 (+)

Expression


Co-expression Network