use1 (use1,LOC107756022)


Basic Information

Item Value
gene id use1
gene name use1,LOC107756022
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12139593 ~ 12147859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930476.2
CCTGCGACCTCCGGTTGTCTGTTTCCAATATGGCCGCGTCCAGGTTAGAAATCAATTTTATCAGGTTGTTATCGCGTTGTGAAGCTATTGCTTCCGAAAAAAGAGGAGAGACGGAATGGAGGCTGGAGAAGTACGTGGGTGCCTTGGAGGACATGCTGGTGGCATTGAGAAAGAGTCCAGGCAAACCCACTGCTGAGATCCTGACAGACTACACACGTAAAGTCGACTTCCTCAAAGGTCTTATAGAGGCTGAGAAGCTGCCGTCACCTTCGGAGAAAGCTTTAGCCAATCAGCTCCTGGCGCCGGGTCGCACACCCACCATCTCCAGCGAGAGGATGTCGGCCACCAAGACAGTGCACATGCAGAGTAAAGCACGGTGCACAGGGGAGATGCGCTCCGAGCTCTTCAGCTCTgCTGCCTCAAGTGCAGGTGCTGAGACAGAGCTGAGACATAGGAGCCGCAGTGTCCCAGTGGACGAGTGTGAGAGCGCGGCCGAGCTGGACGCTGTACTGCAGCACCACCACAGTCTGCAGGAGAAGCTGGCTGAGGACATGCTGAACCTCGCACGCAACCTGAAGAACAACACACTCGCTGCACAGAACATCATCAAACAGGACAACCAGACTCTGAGTCAGTCCATGCGGCAGGCAGATCTGAACTTCGAGAAGCTGAAGACTGAATCGGAGCGACTGGAGCAACATGCAAAGAAATCCGTCAACTGGTTCCTCTGGCTGATGCTCATATTAGTCTCATTCACCTTCATCAGTATGATCCTGTTCATCCGCCTCTTTCCCAGACTCAGGTGATGTGACCTGACTCAAACGGcggctttaacacacacacacacacacacacacacacacacacacacacggacctGTGTTTTGATTATGCAAACCCCACTGAAGGCCTGGACGTGACTCGAAAAGATCCTGTGCAGCTTGTACCAGTGAACATGGCCACTGTTCCTGCATTAACACTAATCCCAGTTCTTTATATTTATCTGCTTCATTAACTCctgtataatattaaaacatCCTCATAATCATCCTGTTATCTGCAGTCTTCCAGTGTCACACTTCGTCTGCAGTCTAGAACCCGCTGAGTGCTCCACATGAACCCTGACATTCTCTCGAATAaagattttagtgttttttttgctgattgTAGAATTCTGGGCATGTCTTTGTTGGGACAGATGGACATGGACATGTCTTTCAGCAATCAGCAGACAGACCTCACTGACTCCACGTACTGTTAGCTCTGTGGTACGCCACCTATACCAAGttttggttctatttccctAAATATAAATAAGCTAGTCAGTTTATATAAACCACTGCAACTCCGGCCGTGGTAAAGCACTTCCTCAAGATACATGAATGTGGTAAAAAATGTGTCAAATATTATCACACAAGCTCTCATGTAAGTGAAAGTGACTTTCTTTGCTTCGTATCTGATTGTATATTCACCCTACGTTCACAGTAGCAAGCAGCAAGGCACATGCAATCGTtcattttgtatgtatgtacgcAACACAGAGTCGAGATTTCAACAACAAGCAACATCTGAATCGATTCACTCAATTCTATTCAAATTAGCACCGATGCTGTGAAGTGACAAATCAAAACAATTACCTTGAAGGATTCCTCAGACCAGTTCTACGACATGTGTGCgctgacgtttcttcagttccctgaTCGCAATTTTAGTTCCTACCTGTAGTGTGTTCTCacaaaaaatataagaaaaacttataaccacAGTTTCATCtaatcctgtcatatacgacgTCTCGTTAAATGcgtatagagacattacaaagaaaaataaagcttggaaggaagtggCAGAGATCGCTGGAGCGTCTGGTGAGCGTATAGAGCTAGTGCAGTTTTGCTAATCTGTTTTACTCTCTTGTAGTTTTGCTTGCTTTGCCAATCTAATCTGAGGATTAATCTAGTACAAAGCCGAGcacataacatgtaaatcaaaaacaactgattagtgtgttatttaatttgtgttaaactagttagctttagaaggtATATGTAGCTACTACCATTCCTCATCTCATCTCGGGACAGGCCTCAGCTACAAAGAACAAAAAGCAAAACCACCAAATTGTTGCGTGCTAGTGTGAACAGCCGCCTATATTCTAAcatatcagttaaaaaaaaagagcatgctATGGCTGAcgtttaaagatttttttgtggtttttttgtgtttttaaatccatcAAAATGTTTTCCAATTCAGCCGAagtttatgtgaatgtgtgtattgtcCTCATGGATGATCTGctctgtgttttatgttttaaaattttgtgaTATTGTCTTATTATTGTGGCCTCAGTGAGGTTTGAACTGACTTGCTGAAAAAGCACTGTGTCCTAATCTAAAGGTCCACTCTTGCCTTTGAGGTCCAGCAGGCTTGTTGGGACTCGCCTGAGCCAGAGAGCTGCATTCTGAGTCACAGCGGGAAGCTCTTCTGATCCTCTTTCATACACATGACTCGGTGAAGCCCAACAAACCTTCTGTACTCTAACAGAAACATGCCTGATTTGTGCATTCTGTTaagtaaaggaaaaatcaaaTCTCCATTGAACCTGAAGCTGTGTACATCCACTCTCAGGAATACACACCAAGGTCAGGAGCAGAGTCTTAGCATCATTTGTTCAAATTTAACTATCCTCGTATCCATAGTCTCctatcctttttttctctccaaattCCAGAGATTGAAATACAAATTAGAAAAAATTAATATGAACATGCATTTGCAGTTGGATTTCCCTCATGCATAAGGGAAACATTGAAATACGTGAAACATTCAAATTcggttaaagaaaaaaaaaaagaaagaaaaaaaaaaagatgtttcttTCCAAGTCCCGCCCACAGCATTTGATTGACAGTGCTACCTTGTTGACAGGAAACGCAAATGAGATTGTGTAAAGATGAGAGACTGCAATATTCAAAGAAACGATTGCAATTACATTTTCAGTACTGCAAAATCACACCTGTTAAGACGTTGagaataaaatgtgtgaaatgcaaatattttgtaCCTGAACTTGAATTATATCTCAAATTGTGCACTAAAGGAAATCCAGATgcaaatacatgtttaaatgaGCTTTTTATTAGAAGAGCTGGAGTTTGAATAAAGTCCAGAAAATGTTGCCATATTCAATATCTCTGTATGTAAAACAGCttaaaaaggtttattttaattgaatgaatgaataaataataagagTGAA

Function

symbol description
use1 Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Orthologous to human USE1 (unconventional SNARE in the ER 1).

NR:

description
PREDICTED: vesicle transport protein USE1

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08507 USE1; unconventional SNARE in the endoplasmic reticulum protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930476.2 True 3274 mRNA 0.42 8 12139593 12147859

Neighbor

gene id symbol gene type direction distance location
LOC113536486 myo9b coding upstream 3725 12073244 ~ 12135868 (+)
cers1 cers1,LOC107718480 coding upstream 120093 11996456 ~ 12019500 (+)
kng1 NA coding upstream 147477 11985422 ~ 11992116 (+)
atp11b atp11b,si:dkey-211e20.10,LOC106613933,LOC107566880,LOC107747927 coding upstream 180890 11900396 ~ 11958703 (+)
dnajc19 dnajc19,LOC107727073 coding upstream 277758 11855619 ~ 11861835 (+)
insrb insr,LOC108271075 coding downstream 6409 12154268 ~ 12233819 (+)
arhgef18b arhgef18 coding downstream 91373 12239232 ~ 12300910 (+)
sass6 sass6,LOC107756018 coding downstream 208136 12355995 ~ 12369777 (+)
trnag-ucc_15 NA coding downstream 240311 12388170 ~ 12388241 (+)
trmt13 trmt13 coding downstream 326074 12473933 ~ 12479769 (+)
G180132 NA non-coding upstream 76683 12062559 ~ 12062910 (+)
G180122 NA non-coding upstream 85981 12053272 ~ 12053612 (+)
LOC113536506 NA non-coding upstream 86443 12045804 ~ 12053150 (+)
LOC117598401 NA non-coding upstream 102137 12032000 ~ 12037456 (+)
LOC117598421 NA non-coding upstream 311055 11826929 ~ 11828538 (+)
G180144 NA non-coding downstream 33156 12181015 ~ 12186970 (+)
G180192 NA non-coding downstream 245028 12392887 ~ 12393491 (+)
G180205 NA non-coding downstream 274843 12422702 ~ 12423152 (+)
G180242 NA non-coding downstream 338647 12486506 ~ 12486744 (+)
G180246 NA non-coding downstream 348872 12496731 ~ 12497651 (+)
G180121 NA other upstream 83844 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 708696 11428613 ~ 11430897 (+)
G179643 NA other upstream 977996 11160346 ~ 11161597 (+)
G179632 NA other upstream 1040782 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 1288670 10810670 ~ 10850923 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 180193 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 365029 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 425298 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 948514 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 1088618 13236477 ~ 13239637 (+)

Expression


Co-expression Network