trmt13 (trmt13)


Basic Information

Item Value
gene id trmt13
gene name trmt13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12473933 ~ 12479769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930503.2
ggctgaatctcaaatcaCCTAATATAAAACATGAAGTGCCCTGCGTAGATTGTAAGCGCCTACTCATTTATCAACTTTCTAGGGCGCTTGAATAGGGGAAGTTGAGCGCTAGTTGGAATTGTGCCAAAATGGCTGCGGTTGTGTCAGACGGAGTTTCAGCTCCTTTACCTGGAAGATGCGCCTTTTACGTCGCGAAAAAGAAACGTTACTGCAAAATGGTGGTTGGAAACGGAAAAAAGTTTTGCGGTGAACATGGAAATGcagaTGCAGATAGTGAGAGAAAACGGATCCCCTGCCCTCTGGACCCAAAGCACACTGTGTTTGAAGACAGTTTGGCAAAACACCTGAAAAAGTGTAATTCGAAGGAGAAGCCCAAACCTgTTTACTATGTGAAAGACATCAATGCTGGGTCTGTAACTGAAGAGGAAAACACCATAGATGAGGTGGCCATTGCTGAGCGATCTAAAGAGGAGCTGGATAGTCTTATTCAGAAACTGAAGACTGCATTGAAAGGATTAAACACAGAACCTGACACTAGCCTTCTCTTTCATCCGGCTTTAAACGAAGCTCTTAACGATCCCAAGAATGGGAACTTTGCTTTTAAACATCTCAAGCAGCAGGCCTCGATCCTGGGGAACATGGAGGCTCTGGAGCTGCTCGGGTCAGAGAGGTGTTATGTGGAGTTTGGTGCTGGAAAAGGTAAACTCTCCCACTGGATTCACGTTGCCCTTCAGGAAGCCAAGAACGTCCACTTCCTGTTAGTGGAGAGGTCCAGTACTCGCTTTAAGGTAGATggcaaacacaaaaacacagactcGACATTCGACAGGCTGCAGGTTGACATTCAGCACCTCGACTTAAGCAGAGTGCCATTTTTACAAGAAAAGCGACTTCCTGTAATTGCAGTGGGCAAACACCTGTGTGGCGCAGCAACAGATTTGGCTCTGCGATGTTTATTTGAACGCAGtgcaaaagacaaagacagtGAGCCTCCCACTAAACGTATAAAActgcaagaagaagaagaaggaggtgaGGAGGCGATGCTTGGGTCTGAGAGCAGCGAGGAGGTTGTGGTGTCGGGGCTTGCTGTTGCACTCTGCTGCCATCATCGCTGTGACTGGAGGCATTATGTAGGAAAGGACTTTTTCCGGGAGCGAGGTCTTGGAGCCACAGAGTTTTCAGCTTTCCAGCGCATGTCCAGCTGGGCAACATGTGGCATGAGCAGAGTCAAATCCTCCTTAAATCCTGAGAAATCATCACAAGAGTACTtcaaagatgaagaagaagaagagggtgAACATGAAGGGAGTTCTGAAAACATACCTGATCATCTCAACAATGCTGTTTCAGCAGAGGAGCGTGAGCACATCGGACGCCTGTGCAAGACGCTGATCAACCACGGCAGGCTGCATTACCTCCAGCAGCGAGGCTTCAAATCCAGCCTCAGGTACTACACCAGCCGAGACGTGTCTTTAGAGAACGTGCTTCTGACTGCGCTTCCCAGCtaaacacacaaactcttcagacgcagacacacaacaaaaaatagTGATGAGttcatttttagttttctcTTTTAAGGACACAGTGGCAGCAGCAGAGAACAAAACAGCACTCACTAGTCCTAGACTAGAGAGGCGTAACACATCTTTGCAGGACGTGCAGGACAGATGGGACAGGACAGGTTCATCAGGACAGGAGGCAAAAGCGACAGTAGCAGCCAGCATGCAGGACTGAGTCACGCCACTTCCTCTATCGTACCCTCCAGCGTCACATTTAGCATTGATGTATAAGTCTGGGATCCTGAAACACATTTTTGATGGACAGCAGGTCATTCACAGACTGTgcaggtttctttttttattattattttatgaaaaaaaaaaaaactatcctAGCATTTGTGTGCACAGTGCACAT
>XM_034308405.1
ctggctgaatctcaaatcaCCTAATATAAAACATGAAGTGCCCTGCGTAGATTGTAAGCGCCTACTCATTTATCAACTTTCTAGGGCGCTTGAATAGGGGAAGTTGAGCGCTAGTTGGAATTGTGCCAAAATGGCTGCGGTTGTGTCAGACGGAGTTTCAGCTCCTTTACCTGGAAGATGCGCCTTTTACGTCGCGAAAAAGAAACGTTACTGCAAAATGGTGGTTGGAAACGGAAAAAAGTTTTGCGGTGAACATGGAAATGcagaTGCAGATAGTGAGAGAAAACGGATCCCCTGCCCTCTGGACCCAAAGCACACTGTGTTTGAAGACAGTTTGGCAAAACACCTGAAAAAGTGTAATTCGAAGGAGAAGCCCAAACCTgTTTACTATGTGAAAGACATCAATGCTGGGTCTGTAACTGAAGAGGAAAACACCATAGATGAGGTGGCCATTGCTGAGCGATCTAAAGAGGAGCTGGATAGTCTTATTCAGAAACTGAAGACTGCATTGAAAGGATTAAACACAGAACCTGACACTAGCCTTCTCTTTCATCCGGCTTTAAACGAAGCTCTTAACGATCCCAAGAATGGGAACTTTGCTTTTAAACATCTCAAGCAGCAGGCCTCGATCCTGGGGAACATGGAGGCTCTGGAGCTGCTCGGGTCAGAGAGGTGTTATGTGGAGTTTGGTGCTGGAAAAGGTAAACTCTCCCACTGGATTCACGTTGCCCTTCAGGAAGCCAAGAACGTCCACTTCCTGTTAGTGGAGAGGTCCAGTACTCGCTTTAAGGTAGATggcaaacacaaaaacacagactcGACATTCGACAGGCTGCAGGTTGACATTCAGCACCTCGACTTAAGCAGAGTGCCATTTTTACAAGAAAAGCGACTTCCTGTAATTGCAGTGGGCAAACACCTGTGTGGCGCAGCAACAGATTTGGCTCTGCGATGTTTATTTGAACGCAGtgcaaaagacaaagacagtGAGCCTCCCACTAAACGTATAAAActgcaagaagaagaagaaggaggtgaGGAGGCGATGCTTGGGTCTGAGAGCAGCGAGGAGGTTGTGGTGTCGGGGCTTGCTGTTGCACTCTGCTGCCATCATCGCTGTGACTGGAGGCATTATGTAGGAAAGGACTTTTTCCGGGAGCGAGGTCTTGGAGCCACAGAGTTTTCAGCTTTCCAGCGCATGTCCAGCTGGGCAACATGTGGCATGAGCAGAGTCAAATCCTCCTTAAATCCTGAGAAATCATCACAAGAGTACTtcaaagatgaagaagaagaagagggtgAACATGAAGGGAGTTCTGAAAACATACCTGATCATCTCAACAATGCTGTTTCAGCAGAGGAGCGTGAGCACATCGGACGCCTGTGCAAGACGCTGATCAACCACGGCAGGCTGCATTACCTCCAGCAGCGAGGCTTCAAATCCAGCCTCAGGACACAGTGGCAGCAGCAGAGAACAAAACAGCACTCACTAGTCCTAGACTAGAGAGGCGTAACACATCTTTGCAGGACGTGCAGGACAGATGGGACAGGACAGGTTCATCAGGACAGGAGGCAAAAGCGACAGTAGCAGCCAGCATGCAGGACTGAGTCACGCCACTTCCTCTATCGTACCCTCCAGCGTCACATTTAGCATTGATGTATAAGTCTGGGATCCTGAAACACATTTTTGATGGACAGCAGGTCATTCACAGACTGTgcaggtttctttttttattattattttatgaaaaaaaaaaaaactatcctAGCATTTGTGTGCACAGTGCACAT

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
tRNA:m(4)X modification enzyme TRM13 homolog

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930503.2 True 1923 mRNA 0.47 11 12473935 12479769
XM_034308405.1 False 1791 mRNA 0.47 12 12473933 12479769

Neighbor

gene id symbol gene type direction distance location
trnag-ucc_15 NA coding upstream 85692 12388170 ~ 12388241 (+)
sass6 sass6,LOC107756018 coding upstream 104156 12355995 ~ 12369777 (+)
arhgef18b arhgef18 coding upstream 173023 12239232 ~ 12300910 (+)
insrb insr,LOC108271075 coding upstream 240114 12154268 ~ 12233819 (+)
use1 use1,LOC107756022 coding upstream 326074 12139593 ~ 12147859 (+)
LOC113536408 LOC108271398 coding downstream 4354 12484123 ~ 12487609 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding downstream 18082 12497851 ~ 12507903 (+)
LOC117598419 gpr88 coding downstream 85449 12565218 ~ 12566601 (+)
LOC113536666 gpr88 coding downstream 107704 12587473 ~ 12590364 (+)
LOC117598432 NA coding downstream 122562 12602331 ~ 12605805 (+)
G180205 NA non-coding upstream 50781 12422702 ~ 12423152 (+)
G180192 NA non-coding upstream 80442 12392887 ~ 12393491 (+)
G180144 NA non-coding upstream 286963 12181015 ~ 12186970 (+)
G180132 NA non-coding upstream 411023 12062559 ~ 12062910 (+)
G180122 NA non-coding upstream 420321 12053272 ~ 12053612 (+)
G180242 NA non-coding downstream 6737 12486506 ~ 12486744 (+)
G180246 NA non-coding downstream 16962 12496731 ~ 12497651 (+)
G180267 NA non-coding downstream 174027 12653796 ~ 12654215 (+)
G180268 NA non-coding downstream 174653 12654422 ~ 12682563 (+)
G180516 NA non-coding downstream 357099 12836868 ~ 12841282 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 140252 12328052 ~ 12333681 (+)
G180121 NA other upstream 418184 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1043036 11428613 ~ 11430897 (+)
G179643 NA other upstream 1312336 11160346 ~ 11161597 (+)
G179632 NA other upstream 1375122 11096153 ~ 11098811 (+)
cdc14ab cdc14a other downstream 33119 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 93388 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 616604 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 756708 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 770601 13250370 ~ 13250441 (+)

Expression


Co-expression Network