psmd1 (psmd1)


Basic Information

Item Value
gene id psmd1
gene name psmd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11428605 ~ 11475968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930517.2
TTAGTGCACTATATTTTTGTGTTGATAGTAATTTGGGATGCAGCCGCTGTGAAGCGGAAGGTGCAGCTGAACAGGCGCTGAAGTAAATCGCCGTTGTTCAACACCGAAGTGTTTtgacataaatatatttattttcattttcatctgtgGGGCTTTTAAACTCGTGACAGTGATTTTCACTCTTCGGACGCAGATTGAAGAGTTCGAAGTTAAACATGATCACATCTGCCGCTGGAATCATATCCCTCTTGGATGAGGATGAGCCGCAACTGAAGgaGTTTGCACTCCACAAGCTCAACTCCATCGTCAATGACTTCTGGGCTGAAATCTCAGAGTCTGTGGATAAAATTGAGGTCCTGTACGAAGATGAGACTTTCCGTAGCAGAGCGTTTGCTGCGTTGGTGGCTTCTAAAGTGTTTTACCACCTCGGCGCTTTTGAGGAGTCGCTGAACTATGCTCTGGGCGCTGGAGATCTCTTCAACGTCACTGATGACTCTGAATATGTGGAAACCATTATCGCGAAATGTATTGATCACTACACAAAGCTGCGTGTGGAGAATGCCGAGCTGCCAGAGGACGAAGAGAAGAAGACCATCGATCCTCGTCTGGAGGGCATtgttaataaaatgttccaGAGATGCCTGGATGATCACAAGTACAAGCAGGCCATTGGGATTGCGCTGGAGACCAGACGCCTGGACGTGTTTGAGAAAACTATCCTTGAATCGAATGATGTCAGTGGGCTGTTGGCCTACAGCTTGAAGATCTGCATGTCTCTGATGCAGAATAAAAAGTTCCGTAACGAGGTTCTCCGAGTGCTTGTTAAGCTCTACATGAACCTGGAGAAGCCTGATTTTATCAACGTGTGCCAGTGCCTCATATTCCTGGACGACCCTCAAGCCGTGAGCGATATTCTGGAGAAGCTGGTGAAAGAGGATAACCTTCTGATGGCGTATCAGATCTGTTTCGACTTGTACGAAAGTGCAAGCCAGCAGTTTCTGTCCTCTGTTATCCAGAACCTTCGCACTGTCGGCACTCCTATCCCCGCTGTTCCCGGCTCCACGAATACCGGCACTGTGCTAACGCAGGACAAAGACAGtgaTGCGATGGAGACGGACGATAAAGCCGGCAGTTCCCCTGCTGGAAAAGCTGCAGATGCGaaGGACGAACCAAAAGACCAGAACTCAAAAATGATCAAGATCCTCAGCGGTGAAATGGCCATCGAGCTTCATCTGCAGTTCCTCATTCGAAACAACAACACAGACTTAATGATCCTCAAAAACACAAAGGATGCAGTACGAAATTCGGTATGCCACACAGCGACGGTTATAGCAAACTCCTTCATGCACACAGGAACCACAAGCGACCAGTTTCTCAGAGAAAATCTGGAGTGGCTTGCGAGAGCTACAAACTGGGCAAAGTTCACAGCCACGGCGAGTCTCGGTGTCATTCATAAGgGCCATGAAAAGGAAGCCCTGCAGCTGATGGCCACGTACCTGCCCAAAGACACATCACCAGGCTCCGCCTACCAGGAAGGTGGAGGCCTTTATGCACTCGGACTGATCCACGCTAACCATGGGGGGGACATCATCGATTATCTGCTCAGTCAGCTAAAGAATGCTAGCAATGATATTGTGCGTCATGGCGGAGCTCTGGGTCTCGGCTTAGCAGCTCTTGGTACGGCCCGACAGGATGTTTATGAACTTCTCAAATCAAACCTATACCAGGATGACGCAGTCACGGgagaggCTGCAGGTCTGGCGTTAGGTCTGGTGATGCTGGGCTCTAAATCAGCGCAGGCTATCGAGGACATGGTGGGTTACGCTCAGGAGACGCAGCATGAGAAAATCCTGCGTGGGCTGGCAGTGGGCATTGCCCTGGTTATGTATGGCAGGATGGAGGAGGCTGACGCGCTCATCGAGAGCCTCTGCAGGGACAAAGACCCGATTCTGCGTCGCTCGGGAATGTACACAGTCGGCATGGCTTACTGCGGCTCGGGAAACAACAAGGCCATCCGACGCCTGCTGCATGTCGcgGTCAGTGATGTGAATGATGATGTGCGCAGAGCTGCCGTCGAGTCCATCGGATTCATCATGTTCAGgactCCAGAGCAGTGTCCCAGTGTGGTGTCCCTCCTGTCTGAGAGTTACAACCCTCATGTCCGCTGTGGAGCAGCAATGGCTCTGGGGATCTGCTGCGCTGGCACCGGGTACAAGgaagcAATAAACCTGCTGGAGCCCATGACCAACGATCCAGTCAACTACGTGAGACAGGGAGCTCTCATCGCCTCGGCCCTCATCATGATCCAGCAGAGTGAAGTCACCTGCCCCAAGGTTAATCAGTTCAGGCAGCTGTACGCCAAAGTGATCAACGATAAGCATGATGACGTCATGGCCAAATTTGGAGCCATTCTGGCTCAGGGCATTCTGGATGCAGgtGGCCGGAACGTAACTATCTCCTTGCAGTCGCGGaccggacacacacacatgccctcCATTGTGGGTCTGCTGGTGTTCACTCAGTTCTGGTTCTGGTTTCCGctgtctcacttcctgtctctggCCTTCACACCTACCGCCATCATTGGCCTCAATAAGGACCTGAAGATGCCAAAAGTGCAGTACAGGTCCAACTGTAAACCCTCGACCTTCGCTTACCCTCCAGCTCTGGAAGTTCCcaaggagaaagaaaaggagaagGTTTCCACTGCTGTTCTGTCCATCACCGCTAAAGccaagaagaaggagaaagagaagaaggagaaggaggaggagaagatggAAGTGGAGCCGCAGGAGAccgaaaaagaaaagaaagaggaggagaaggagaaagagaaggagaagaagaaggagcaaGAGCCCAATTTCCAGATGTTGGAGAATCCAGCGAGAGCGATGCCGGCACAGCTCCGAGTGCTAACCATGCCTGAGAATTGTCGCTATCAGCCGTTTAAACcaCTCCACACAGGTGGTATTATCATCCTGAAGGACAccagtgaggaggaggaggagcttgtggaGCCAGTCTCCGCCCACGGGCCTAAAATAgaagaggaggagcaggagcCTGAGCCCCCAGAGCCATTCGAGTACATAGACGAGTGAACGTTCTCTGCGTCGGTACGCAGAACCTGAGTTTACACAAGGAATCGATTTAGGTCCAGTTTAAACAGTACCTTTAAAGAGCTTCAACTCCTTTTTCCTTCTttgacaggtgcagaggccatTCGTATCCCAGCATGCACCTCTTCATGTCCTTTTTGCCACATGATCCCCTGTTATTTTATACGTTCCTCACTCCTCCTGGCCTCGCTGCCACACAGCGagtgttttctgttattttctgaCAATTCAATAAAATGAACTCTATGAGA
>XM_026930518.2
TTAGTGCACTATATTTTTGTGTTGATAGTAATTTGGGATGCAGCCGCTGTGAAGCGGAAGGTGCAGCTGAACAGGCGCTGAAGTAAATCGCCGTTGTTCAACACCGAAGTGTTTtgacataaatatatttattttcattttcatctgtgGGGCTTTTAAACTCGTGACAGTGATTTTCACTCTTCGGACGCAGATTGAAGAGTTCGAAGTTAAACATGATCACATCTGCCGCTGGAATCATATCCCTCTTGGATGAGGATGAGCCGCAACTGAAGgaGTTTGCACTCCACAAGCTCAACTCCATCGTCAATGACTTCTGGGCTGAAATCTCAGAGTCTGTGGATAAAATTGAGGTCCTGTACGAAGATGAGACTTTCCGTAGCAGAGCGTTTGCTGCGTTGGTGGCTTCTAAAGTGTTTTACCACCTCGGCGCTTTTGAGGAGTCGCTGAACTATGCTCTGGGCGCTGGAGATCTCTTCAACGTCACTGATGACTCTGAATATGTGGAAACCATTATCGCGAAATGTATTGATCACTACACAAAGCTGCGTGTGGAGAATGCCGAGCTGCCAGAGGACGAAGAGAAGAAGACCATCGATCCTCGTCTGGAGGGCATtgttaataaaatgttccaGAGATGCCTGGATGATCACAAGTACAAGCAGGCCATTGGGATTGCGCTGGAGACCAGACGCCTGGACGTGTTTGAGAAAACTATCCTTGAATCGAATGATGTCAGTGGGCTGTTGGCCTACAGCTTGAAGATCTGCATGTCTCTGATGCAGAATAAAAAGTTCCGTAACGAGGTTCTCCGAGTGCTTGTTAAGCTCTACATGAACCTGGAGAAGCCTGATTTTATCAACGTGTGCCAGTGCCTCATATTCCTGGACGACCCTCAAGCCGTGAGCGATATTCTGGAGAAGCTGGTGAAAGAGGATAACCTTCTGATGGCGTATCAGATCTGTTTCGACTTGTACGAAAGTGCAAGCCAGCAGTTTCTGTCCTCTGTTATCCAGAACCTTCGCACTGTCGGCACTCCTATCCCCGCTGTTCCCGGCTCCACGAATACCGGCACTGTGCTAACGCAGGACAAAGACAGtgaTGCGATGGAGACGGACGATAAAGCCGGCAGTTCCCCTGCTGGAAAAGCTGCAGATGCGaaGGACGAACCAAAAGACCAGAACTCAAAAATGATCAAGATCCTCAGCGGTGAAATGGCCATCGAGCTTCATCTGCAGTTCCTCATTCGAAACAACAACACAGACTTAATGATCCTCAAAAACACAAAGGATGCAGTACGAAATTCGGTATGCCACACAGCGACGGTTATAGCAAACTCCTTCATGCACACAGGAACCACAAGCGACCAGTTTCTCAGAGAAAATCTGGAGTGGCTTGCGAGAGCTACAAACTGGGCAAAGTTCACAGCCACGGCGAGTCTCGGTGTCATTCATAAGgGCCATGAAAAGGAAGCCCTGCAGCTGATGGCCACGTACCTGCCCAAAGACACATCACCAGGCTCCGCCTACCAGGAAGGTGGAGGCCTTTATGCACTCGGACTGATCCACGCTAACCATGGGGGGGACATCATCGATTATCTGCTCAGTCAGCTAAAGAATGCTAGCAATGATATTGTGCGTCATGGCGGAGCTCTGGGTCTCGGCTTAGCAGCTCTTGGTACGGCCCGACAGGATGTTTATGAACTTCTCAAATCAAACCTATACCAGGATGACGCAGTCACGGgagaggCTGCAGGTCTGGCGTTAGGTCTGGTGATGCTGGGCTCTAAATCAGCGCAGGCTATCGAGGACATGGTGGGTTACGCTCAGGAGACGCAGCATGAGAAAATCCTGCGTGGGCTGGCAGTGGGCATTGCCCTGGTTATGTATGGCAGGATGGAGGAGGCTGACGCGCTCATCGAGAGCCTCTGCAGGGACAAAGACCCGATTCTGCGTCGCTCGGGAATGTACACAGTCGGCATGGCTTACTGCGGCTCGGGAAACAACAAGGCCATCCGACGCCTGCTGCATGTCGcgGTCAGTGATGTGAATGATGATGTGCGCAGAGCTGCCGTCGAGTCCATCGGATTCATCATGTTCAGgactCCAGAGCAGTGTCCCAGTGTGGTGTCCCTCCTGTCTGAGAGTTACAACCCTCATGTCCGCTGTGGAGCAGCAATGGCTCTGGGGATCTGCTGCGCTGGCACCGGGTACAAGgaagcAATAAACCTGCTGGAGCCCATGACCAACGATCCAGTCAACTACGTGAGACAGGGAGCTCTCATCGCCTCGGCCCTCATCATGATCCAGCAGAGTGAAGTCACCTGCCCCAAGGTTAATCAGTTCAGGCAGCTGTACGCCAAAGTGATCAACGATAAGCATGATGACGTCATGGCCAAATTTGGAGCCATTCTGGCTCAGGGCATTCTGGATGCAGgtGGCCGGAACGTAACTATCTCCTTGCAGTCGCGGaccggacacacacacatgccctcCATTGTGGGTCTGCTGGTGTTCACTCAGTTCTGGTTCTGGTTTCCGctgtctcacttcctgtctctggCCTTCACACCTACCGCCATCATTGGCCTCAATAAGGACCTGAAGATGCCAAAAGTGCAGTACAGGTCCAACTGTAAACCCTCGACCTTCGCTTACCCTCCAGCTCTGGAAGTTCCcaaggagaaagaaaaggagaagGTTTCCACTGCTGTTCTGTCCATCACCGCTAAAGccaagaagaaggagaaagagaagaaggagaaggaggaggagaagatggAAGTGGAGCCGCAGGAGAccgaaaaagaaaagaaagaggaggagaaggagaaagagaaggagaagaagaaggagcaaGAGCCCAATTTCCAGATGTTGGAGAATCCAGCGAGAGCGATGCCGGCACAGCTCCGAGTGCTAACCATGCCTGAGAATTGTCGCTATCAGCCGTTTAAACcaCTCCACACAGGTGGTATTATCATCCTGAAGGACAccagtgaggaggaggaggagcttgtggaGCCAGTCTCCGCCCACGGGCCTAAAATAgaagaggaggagcaggagcCTGAGCCCCCAGAGCCATTCGAGTACATAGACGAGTGAACGTTCTCTGCGTCGgtgcagaggccatTCGTATCCCAGCATGCACCTCTTCATGTCCTTTTTGCCACATGATCCCCTGTTATTTTATACGTTCCTCACTCCTCCTGGCCTCGCTGCCACACAGCGagtgttttctgttattttctgaCAATTCAATAAAATGAACTCTATGAGA

Function

symbol description
psmd1 Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within regulation of protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD1 (proteasome 26S subunit, non-ATPase 1).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 isoform X3

GO: NA

KEGG:

id description
K03032 PSMD1, RPN2; 26S proteasome regulatory subunit N2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930517.2 True 3376 mRNA 0.51 24 11428605 11475968
XM_026930518.2 False 3282 mRNA 0.51 25 11428605 11475968

Neighbor

gene id symbol gene type direction distance location
LOC113536755 acap2 coding downstream 190796 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 315016 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 320040 11096127 ~ 11108565 (-)
hykk.2 hykk coding downstream 784411 10639021 ~ 10644194 (-)
nmur1a LOC108270657 coding downstream 793248 10623289 ~ 10635357 (-)
LOC113536618 LOC108271381 coding upstream 2640 11478608 ~ 11481509 (-)
LOC117598431 NA coding upstream 44151 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 266980 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 482310 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 497713 11973681 ~ 11980660 (-)
G179727 NA non-coding downstream 232932 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 849145 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 852573 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 865153 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 913404 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 82951 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 252309 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 520202 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 577313 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 597301 12073269 ~ 12074531 (-)
G179803 ncl other downstream 8559 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 182295 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 733486 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 905026 10486735 ~ 10523579 (-)
G179035 NA other downstream 1613380 9813892 ~ 9815225 (-)
LOC117598430 NA other upstream 15739 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 34878 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 51989 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 387021 11862989 ~ 11889149 (-)
ncln ncln other upstream 544444 12020412 ~ 12032006 (-)

Expression


Co-expression Network