sptbn1 (sptbn1,LOC108270927,LOC108442064)


Basic Information

Item Value
gene id sptbn1
gene name sptbn1,LOC108270927,LOC108442064
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6001691 ~ 6084807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930527.2
tctctctctctctctctctctcacgcacacacacacgcgcgcacacacacacacacacacacaggcacacgcacgcgcacgcactGCGGACTCGGAAAGGCGGTGAAGTTCGTCACGTACTCTTCGATAGGGCTTCAGAGGAAGCCGCCCATGAGGAAGTGTGATCATTGAAAAGGCCAAAAGGTGAGAGGTCAGGATGACGACAGTAGCCGCCGAATATGACCACATGGACATCCAGCAGCAGTACCAGGATACTGTCAACAACCGCTGGGATGAGGAGTGGGACAACGAGAACAGTTCAGCCCGCCTGTTCGAGCGCTCACGTATCAAGGCCTTAGCAGATGAGCGTGAGGCGGTGCAGAAGAAGACCTTCACAAAATGGGTCAACTCACACCTGGCACGGGTCTCCTGCCGCATTACAGACCTGTACATGGACCTACGGGATGGACGCATGCTCATCAAGCTCCTGGAGGTGCTCTCTGGAGAGAAGCTGCCCAAACCCACGAAGGGCCGAATGAGAATCCACTGTCTGGAGAACGTGGATAAAGCCCTGCAGTTCCTCAAGGAGCAACGCGTCCACCTGGAGAACATGGGCTCCCATGACATCGTTGATGGCAACCATCGCCTCACGCTCGGCCTCATCTGGACAATCATTCTCCGCTTCCAGATCCAAGACATCAGCGTTGTAACAGAAGACAATAAAGAGAAGCGCTCAGCTAAAGACGCTCTGCTTCTGTGGTGTCAGATGAAGACGGCAGGctatCCAAATGTCAACATCCACAACTTCACCACCAGCTGGCGCGACGGAATGGCGTTCAACGCCCTCATTCACAAACACAGGCCGGATCTTATTGATTTTGACAAGCTGAAGAAGTCCAACGCTCACTACAACCTGCAGAATGCCTTCAACTTGGCTGAGCAGCACCTGGGCCTCACTAAACTGCTGGACCCTGAGGATATCAGTGTGGACCATCCTGATGAGAAGTCAGTCATCACCTACGTCGTCACATACTACCACTATTTCTCCAAGATGAAGGCTCTGAAGGTGGAGGGCAAACGTATTGGAAAAGTGCTCGATAACGCCATTGAAACAGAGAAGATGATTGAGAAATACGAATCTCTTGCGTCAGACCTTCTGGAGTGGATCGAGCAGACCATCATCATCCTGAACAACCGCAAGTTTGCTAATTCTCTGGTAGGAGTCCAGCAGCAGCTCCAGGCCTTCAACACGTACCGCACTGTAGAGAAGCCTCCCAAGTTCACAGAGAAAGGTAACCTGGAAGTCCTTCTGTTCACGATTCAGAGCAAAATGAGAGCCAACAACCAGAAAGTCTACATGCCCAGAGAGGGCAAGCTTATCTCAGACATCAACAAGgcCTGGGAGCGTCTGGAGAAGGCGGAGCATGAGCGTGAGCTGGCCCTGAGGAACGAGCTGATTCGTCAGGAGAAGCTGGAGCAGCTGGCACGCCGCTTCGACCGCAAGGCGGCCATGAGAGAAACCTGGCTCAGCGAGAACCAGCGGCTGGTGTCACAGGACAACTTCGGCTTCGACCTCCAGGCAGTGGAGGCGGCCACCAAGAAGCACGAAGCCATCGAGACGGACATCGCAGCCTACGAGGAACGTGTGCAAGCTGTGGTGGCTGTGGCTAAAGAGCTGGAAGCGGAGAACTACCACGACATCAAGCGCATTGCGGCACGTAAGGACAACGTGCTGCGGCTCTGGGACTATCTACTGGAGCTGCTGAAGGCACGCAGGCAGAGGCTGGAGATGAACCTGGGCGTGCAGCGTGTCTTCCAGGAGATGCTCTACATCATGGACTGGATGGATGAGATGAAGATGCTACTGCTGTCTCAGGACTACGGGAAGCACTTGCTGGGAGTGGAAGATCTGCTGCAGAAACACGCTCTGGTGGAGGCTGATATCGCCATCCAGGCCGACCGCGTGCGGGCCGTCAATTCCACCGCCCAGAAATTCGCTGTTGATGATGAAGGTTACAAGCCGTGTGATCCGCAGGTGATCCGTGATCGGGTGGCTCACCTGGAGTTCTGCTACCAGGAGTTGACGCAGTTGGCGGCTGAGCGACGTGCACGTCTGGAGGAGTCTCGCCGTCTCTGGAAGTTCTTCTGGGAGATGGCTGAGGAGGAGGGCTGGATCCGTGAGAAGGAGCAGATCCTGTCATCAGACGACGTTGGCAAGGACCTGACAGGTGCTGTGCGTTTGCTGAGTAAGCACCGGGCGCTTGAGGACGAGATGAGTGGCCGAGCCGGGCACCTGCAGCACACGTTGCGTGAGGGTCAGGCCATGGCTGACGCCGGACACTTTGGAGAGGCCAAGATCCGCGAGCGCGTGGCTGATGTGCAGGCTCAGTGGGCGGCGCTGGAGCAACTCGCTGCAGTCCGGAAGGCACGTCTAGAGGAGGCCTGCAGCTTGCACCAGTTCCAGGCTGATGCCGATGACGTGGATGCCTGGATGCTGGACGCGCTGCGCATCGTTTCAAGTGACGATGTCGGCCATGACGAGTTCTCCACGCAGGCACTGGTTAAGAAGCACAGGGATGCAGCAGCCGAGGTGGCCAGCTACCGACCCGTGATCGACTCACTCCACGAGCAGGCTCAGGCACTGCCCGATGAGCTGGCTCATTCAGTCGACGTCAGCGGACGCCTGGCGGGCATCGAGGAGCGCTATAAGGAGTTGACAGAGCTCACCCGGCTGAGGAAACAGGCTCTGCAGGATGCACTGGCTCTCTATAAGATGTTCAGTGAGGCTGACGCCTGCGAGGTGTGGATCGACGAGAAGGAGCAGTGGCTCAACAGCATGGAGATTCCAGAGAAACTGGAGGACCTGGAAGTTATTCAGCACAGGTTCGAGAGTCTGGAGCCTGAGATGAATAACCAGGCGTCCCGCGTCGCTGTGGTCAATCAGATCGCCCGGCAGCTGATTCACAGTGGACACCCCAGCGAGAAGGACATCAAGGCTCAGCAGGACAAACTGAACACCAGGTGGAGCCAGTTCAGAGACTTGGTGGACCAGAAGAAGGAGTCCCTGAACTCGGCACTGGGTGTCCAGAACTATCACCTGGACTGCAACGAGACCAAGTCGTGGATCCGCGAGAAGACCAAAGTGATCGAGTCCACTCAGGACCTGGGTAACGACCTGACAGGAGTCATGGCACTGCAGCGCAAGCTGACGGGGATGGAGCGCGACTTGGCCGCCATCGAGGCCAAGCTGGGTGACCTGCGTGGAGAGGCAGAGCGTCTGGCAGCTGAGCATCCTGAACAAGCCAAGGCTATCACGGACAGGCTGGCGGAGATCGGCACCGTCTGGGAGGAGCTGAAGGACACACTGCAAAACCGGGAGGCCTCTCTGGGTGAAGCCAGCAAGCTGCAGCAGTTCCTCCGCCAGCTGGATGACTTCCAGTCGTGGCTGTCTCGCACACAGACGGCCATCGCTTCTGAGGACATGCCCAACACCCTGGCCGAGGCTGAGAAGCTTCTCGCCCAACACGAAGGCATCAAGCACGAGATTGACAACTATGAAGAGGACTACCAGAAGATGCGGGACATGGGCGAGATGGTGACCCAGGGCCAGACGGACGCCCAGCACATGTTCCTAAGGCAGCGGTTGCAGGCGCTGGACACCGGTTGGAATGAGCTGCATAAGATGTGGGAGAACCGTCAGAACCTCCTGTCTCAGTCTCACGCCTACCAACTGTTCCTCAGAGACACTAAGCAGGCCGAGACCTTCCTCAACAATCAGGAATATGTGTTGGCCCACACTGAGATGCCCACCACTCTAGAAGGAGCAGAAGCTGCTATTAAGAAGCAGGAGGACTTCATGACCACAATGGACGCCAACGAGGAGAAGATCAACGGCGTGGTGGAAGCCGGACGCAGACTGGCCAGTGACGGAAACATCAACGCTGAGAAGATTCAGGAGAGAGCAACTTCCATTGATGACAGACATAAGAAGAACCGTGAGGCGGCTGTGGAGCTCCTGATGAGACTTAAAGACAACAGAGACCTACAGAAGTTCCTGCAGGACTGCCAGGAGCTGTCTCTGTGGATAAACGAGAAGATGCTGACGGCGCAGGACATGTCGTACGACGAGGCCAGAAACCTGCACAGCAAGTGGCTCAAGCACCAAGCCTTCATGGCTGAGCTCCAGTCCAACAAAGAGTGGCTGGATAAGATTGAGAAGGAAGGGATGCAGCTGGTATCAGAGAAGCCTGAGACGGAGGCCGTGGTGAAGGAGAAGCTGGCGGTGCTGCAGACGCAGTGGCAGGAGCTGGAGTCCACCACGCAGACCAAAGCGCAGTGCCTGTTCGACGCCAACAAGGCCGAGCTGTTCACGCAGAGCTGCGCCGATCTCGACAAGTGGCTGGCGAGTCTGGAGGGTCAGATCCAATCAGACGACTACGGCAAAGATCTAACCAGCGTCAACATCCTGCTGAAGAAACAACAGATGCTGGAGAACCAGGTGGAGGTGCGTAAGAGGGAGGTAGAGGAACTCCAGTCTCAGGCTCACGTGCTGCGGCAGGAGGGCAAGGACACGGACGAGGTGGATGGGCGGCGTGAGGTGGTGGAGAAGAAGTTCCAGGAGCTGCTCGATCCTCTTCAGAAGAGGAAGAACTTCCTCACGGCTTCCAGGGAGATCCACCAGTTCAACCGTGACGTCGAGGACGAAATTCTCTGGGTTGAAGAGAGGATGCCTCTCGCTACTTCAACAGACCATGGCCACAACTTACAAACTGTTCAGATGCTAATCAAGAAGAACCAGACCCTGCAGAAGGAGATCCAGGGCCACCAGCCACGCTGTGATGACATCTTCGAGCGCAGCCAGAGCATCGTGACTGTGGACAGCCCGAGTGTGGAGGCCATCAGAGCACGTCTTGCTGAGCTACAGGACCTCTGGAACCTCCTCATCCAGGAAACAGCGAAGAGGCACGAGCGGCTGGAAGAGGCCCATCAGGCACAGCAATACTACTTTGACGCAGCCGAGGCGGAGGCCTGGATGAGCGAGCAGGAGCTTTACATGATGTCAGAGGAGAAAGCTAAGGATGAACAGAGCTCTGTGGCCATGCTGAAGAAACACCAGATCCTAGAGCAGGCGGTGGAGGACTACGCCGAGACCGTTCATCAGCTCTCCAAGACCAGCCGCGGTCTAGTGGCTGACAATCACCCTGAGAGTGAGAGAATAGGCATGCGGCAGTCGCAGGTGGATAAGCTGTACGCAGGACTGAAGGACCTttcagaggagaggagaggaaaactGGACGAGAGGTTCCGCCTCTTCCAGCTGAACCGCGAGGTGGACGATCTGGAGCAGTGGATCGCTGAGAGAGAAGTGGTGGCAGGATCTCACGAGCTGGGCCAGGACTACGAGCACGTCACTATGCTGCAGGAGCGTTTCCGTGAGTTCGCCCGCGACACAGGCAACATTGGTCAGGAACGTGTGGACGGTGTAAACCGGATGGCCGATGAGCTCATCAACGCCGGGCATGCTGACGCTGCAACCGTTGCCGAGTGGAAGGACGGGCTTAACGAGGCCTGGGCGGATCTTCTGGAGCTGATCGACACTCGCACGCAGATCCTGGCGGCTTCCTACGAGCTGCATAAGTTCTACCACGACGTCAAAGAGATCCTGAGCCGCATCCTGGACAAGCACAAGAAGCTTCCGGAAGAGCTCGGGCGAGACCAGAACACAGTGGAGGCACTCCAGAGGATGCACACCACCTTTGAACACGACATACAAGCACTGGGGACACAGgtcaggCAGTTGCAGGAAGACGCGACACGTTTGCAGTCGGCGTATGCCGGCGATAAGGCTGACGATATCCAGCGGAGGGAGAGTGAAGTCCTGGATGCATGGCGGAACCTTCTGGAAGCGTGTGAAGGGCGGAGGGCGCGTCTGCTCGACACTGGAGACAAGTTCCGCTTCTTCAACATGGTGCGTGACCTCATGCTCTGGATGGAGGACGTCATCCGCCTCATCGAGGCCCAGGAGAAACCCAGGGACGTGTCCTCTGTGGAGCTGCTCATGAACAACCACCAGGGCATCAAGGCCGAGATCGACGCCCGTAACGACAGCTTCACCGCCTGCATCGAGCTGGGCAAGTCTCTGCTGGCACGCAAACACTACGCATCAGAGGAGATTAAAGAAAAGTTGCTACAGTTGACGGACAAGAGGAAAGAAATGATTGACAAATGGGAGGACAGATGGGAGTGGCTAAGACTGAtTTTGGAAGTGCACCAGTTTTCGCGGGACGCTGGGGTAGCCGAGGCGTGGTTGCTGGGTCAGGAGCCGTACCTGTCCAGTAAGGAGGTGGGTCAGAGTGTGGACGAGGTGGAGAAGTTGATCAAGAGGCACGAGGCATTCGAGAAGTCAGCCGCTACCTGGGAGGAACGCTTCTCTGCTCTGGAGAGGCTGACTACGCTGGAGTTACTGGAAGTGAGAAGAAGgcaagaagaagaggaaagaagaagaaaacctCCGACGCCAGAGCCGGAGCAGGAGATCGAGCCACAGCAGAGAGAAGGAGAGCAGATCGCTCAGAACGGACTGCCGTCAGACCAGGAATCCCCACGGGACGGAGTGGACGGAGAAATCGTGAACGGCGTGCCTGAGAGGAGCTCTAAGGAGCCGAGTCCCGTCCCGTCCCCGAGCTCAGGCAGACGCGCTAAGGGCAGCCAATCGTCCACCCTGCCAGCCAAAAGTCAGGAGTCTCCCTCCGCCCAGCTGGAGGGCTTCCTTCACCGCAAGCATGAGTTTGAGGGCCACAACAAGAAGGCATCCAACAGGTCCTGGCATAACGTGTACTGCGTTATCAACAACCAAGAGATGGGCTTCTACAAAGACAACAAGAACGCCGGGCAGGGCATCCCGTACCACAACGAGATCCCCGTCAGCCTGAAGGACGCCGTCTGCGAGGTGGCCGTCGActacaagaagaagaagcacgTCTTCAAACTGAGAGTGACAAACGGAAACGAGTATCTCTTCCAAGCCAAAGATGATGAGGAGATGAACACATGGATGCAGGCTATTCAGAATGCAGTCAGTGGCTCCTCCCCTTCAGACAAGTCTGACGTTACGCCTAGCAACCAGAGCACTCCTGCCTCCAGCCGCGCCCACACACTACCGGCAACTGTCACCTTGACGACCGAGTCGAGCCCGGGCAAGCGGGAGAAGGACaaggagaaagacaaagagaagcGTTTCAGTCTCTTCAGCAAGAAGAAGCAGTAGAGGCCAGTTCCCCTAGCAGCAGAGACATCCCGTTCCTTGCTTTCATCaaatttgtctttttatctcttctttactttctctcttaccttctctctctctgtctctgtttctctctctctctctctctctctttcctatCTGTTCACCTCATGTGATATTCCAGCATGCAAGCCGAAGAGCGAATACGCCACACTCTGTGCCTGAAGTCCCTCTGATCGGGTTCCAAAgttacatagaaaaaaaaattatgattaaaaaaaaattctcaaaaaaaaaaggaaagattttTAGCTTGGGTGTGTCATGGGTCAGGTTTGGAAATTCCGAGGATCAGATGTGTCTTTTTACTTCGTTCTGTTTCTATTGTCTTTCAATTTTAAAGCTATGattttaattattgattatgaATATCACTCTTTTACGTAACCGTGACGTTCAGATGGgttggttatttaaaaaaaaaaacgctttcCTCAATTTTGTGAGGCTGTCTCAGAGGGATGCGCGcattctttctgttctttcctgTCGGGGAGCAAGACGGTGACGCTTGACGAAATCGATTCCACTGTGCGATTCCAGTCTGAACCTGAATCTGACATTTCCATATGAAGGAACCTTCGCTAAAATTCCATTCGCTTCTATAGTTGCCATGTTGGCCAAACCTGCCTTTTAACAATTCCAGGCTGTAAAGCCTTAGAACTCCACGCTAATATGAAGGTCGATTAACATTTGCTTGTCGTGTGTCCTTTATTAAAACCACATATTTTTTTTGACCTGTAAGAATGTTATATGCTATATGAAAAAAGtactccttttattttttatttttacattttccttcctttctttattttgtttttttttttcacttctgttGAGTTGCATCATAATATATGTTTCAAATAATTCTAGTACAGAGTATTGAAAAACTAGCTGTATTATAAACACTCTATAGCATCGATGTTAAGTGGAAAGTGGAGCTCGAGCATTTACTGGAATAAAAACGGTAAAgttactcaaaaaaaaatggTCGCTTGCTTGTTGGctatatgattttctttttttggctaCATTATACCGCTATTTGATACATAGTGTGCATTTCTCTGtcactgtatgtaatgtaatgaagaaacaaaaaagaaaatcatctACTGCACAATCAGAAATAGCATAATAGGAATGAAATCCTTTTGCAGCATCAGGGCTGGTGAGGGCGTATAGTAACCTCATTATAGTCCGACTGTATGAAACTGCACCTGTAGACCTTTTACCCCTCTCTGTTAAATATGTGCGATGtcattaaaatgcttttaaacatTACCACA

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

NR:

description
spectrin beta chain, non-erythrocytic 1, partial

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930527.2 True 8577 mRNA 0.54 37 6001691 6084807

Neighbor

gene id symbol gene type direction distance location
eml6 eml6,LOC107597181 coding downstream 3554 5949048 ~ 5998137 (-)
LOC113536410 pcdh20 coding downstream 72562 5924209 ~ 5929129 (-)
rbbp9 rbbp9 coding downstream 143365 5854377 ~ 5858326 (-)
srsf11 srsf11,LOC103035453 coding downstream 157848 5830751 ~ 5843843 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding downstream 215147 5781225 ~ 5786544 (-)
LOC113536414 c10h2orf73 coding upstream 865 6085672 ~ 6094778 (-)
LOC113536415 acyp2,LOC105896825 coding upstream 15222 6100029 ~ 6109372 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding upstream 142287 6227094 ~ 6296876 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding upstream 273330 6358137 ~ 6461826 (-)
ctr9 ctr9 coding upstream 470912 6555719 ~ 6567757 (-)
G176556 NA non-coding downstream 286671 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 594592 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 888423 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 1154550 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 1160998 4839988 ~ 4840693 (-)
G176816 LOC108271104 non-coding upstream 87391 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 99528 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 175990 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 272767 6357574 ~ 6358087 (-)
G176959 NA non-coding upstream 373559 6458366 ~ 6459631 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 293387 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 804873 5139610 ~ 5196818 (-)
G176307 NA other downstream 920796 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1497362 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2005238 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 771948 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1395615 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1495627 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1591109 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2159842 8244649 ~ 8244721 (-)

Expression


Co-expression Network