LOC113536546 (hnrnpll,hnrll,LOC106564787)


Basic Information

Item Value
gene id LOC113536546
gene name hnrnpll,hnrll,LOC106564787
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5591074 ~ 5664681 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930542.2
CAATCTGGCAACTCTGAGCTCGAGGCTTTTCTGCTCTGCAAACGTGCGCCGTCGTGAGGTCCAACGGACTGCCGCTGACCGCGCGCGCTCTCTCTGCTCGGCTTGGCGCTGATCGTCCCGCTCACCGCGGcgttatttgcttgttttttttcttttgttttgttttgtcttgtccGCGTTGAACATGTCGCTGATGGAGGAGTACGCGGAGGAGGAGTACGAACGCGCGCCCAAGCGCCTCAAAACCTCGGAGGTGGAGGAAGGAGAGGAGCTGGAGGAAGGCGAGGACTCGGACTCAGCATCCGCCGGGCTGCTAGGAGACGAGGAGGAGGACACGCGGCGCTCCGGAGGGCAGGACCGGGCCCGGTGGAGCAGCGCGACCTACACCAGCAAACCGGTCCGGAAGGATAACGGGGATGAGACCCACAGGATTGCGCCGTCCCCCGTGGTCCATGTTCGGGGACTGTGTGAGTCAGTGGTGGAAGCTGACCTGGTGGAGGCCTTGGAGAAGTTTGGAAACATCtgCTATGTGATGATGATGCCGTTTAAGAGGCAGGCGCTGGTGGAGTTTGAGGATCTAGAGAGCGCTGACCGATGTGTGGGCTGTGGCTCCAGAGAGGCCGTCTATATTGCAGGACAGCAAGCCTATTTCAACTACTCCACCAGCAAGCGCATCACACGGCCCACAAACGCAGACGACCCCAACAGTGGAAACAAAGTGCTGCTGCTCTCCATTCAGAACCCACTCTACCCCATCACTACAGATGTTTTATACACAGTGTGCAACCCTATCGGCAACGTGCTACGCATCGTCATCTTCAAGCGCAACGGAATTCAGGCCATGGTGGAATTTGAATCGGTCCAGAATGCCCAGAAGGCCAAAGCGGCCCTCAACGGAGCCGACATATACGCCGGCTGCTGCACACTGAAAATCGAGTACGCTCGGCCCTCACGCCTCAACGTCATCAGAAACGACAACGACAGTTGGGACTACACCAAACCCTTTTTGGTCAGACGAGAACGTGGTAAAGGTAGACAGAGGCAGGCCATCCTGGGGGAGCATCCGTCCTCATACAGCGACAACGGTTACGGGACACACTGCCCCCTGCTGCCTCTGCCCAGTAACACCAGGTTCAAGAGGAGTTCCCACGAGGTGCCCGATGTTGTGGCGTACCCTCTGCCCCAGACCTCCTCCTACGTTGGCCACTCCTCCAGCTCTGTTGCCATGGTGAGCGGCCTGCATCCCGCCAAGATGAACTGCACCCGCATCTTCAACCTCTTCTGTCTCTATGGTAACATTGAGAAGGTGAAATTCATGAAGAGTGTGCCTGGAACAGCTCTGGTGGAGATGGGCGATGAGTATGCGGTCGACCGTGCCGTCACACATCTTAACAGTATCAAAGTCTTCAGCAAGAGGCTTAACGTATGCGTGTCCAAGCAGCATGCGGTCATCCCCAGCCAGGTCTTTGAGTTGGAGGACGGTTCGAGCAGCTACAAAGACTTTGCCATGACTCGCAACAACCGCTTCACCAGCGCTGGGCAGGCGTCCAAAAACATCATCCAACCGCCGTCATGCGTGCTGCACTTCTACAATgtccctccctccatctctgaGGACGACCTGCAGAGGTTATGCACAGAGCAGGACGTTCCAGGCTTCATCAAGTTTAAAGTGTTTGATGCCAAACCAAGCTCCAAAACCATCTCCGGCCTCCTGGAATTTGACAGCAAAACCCACGCAGTGGAAGTTTTGACAGTACTGAATCATTACCAGATCAGAATACCCAACGGCTCCAATCCCTACACCCTGAAGCTGTGCTTCTCCACCTCCTCCCACCTCTGAACAGGAGCCGAAGACACACACTTCTCACCATCGCGCTGTTTACACTGGATGGAGACGACGGGAATAGAAAGCTACAGAGCGTGAGGCGAGAAGAGCGGAGCGAGAGGGATGACACACACGGTCATCGCTCTTAGCATGAGGACTTCAAGCGCAAAACACTCAAGAAttgtttcctctttttttttttttaaagactctaaaatgttttcttctcaCACTCTGGTATAACCAGAAACTGACCGACTTTATGATAATGATGTCATCTCACTGAAACTGAGTTTCCCatgggcaaaaaaaa

Function

symbol description
hnrnpll Enables mRNA binding activity. Involved in positive regulation of RNA splicing. Located in membrane.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930542.2 True 2141 mRNA 0.54 13 5591074 5664681

Neighbor

gene id symbol gene type direction distance location
ist1 ist1,LOC107705324,LOC107730168,LOC107600347 coding downstream 17898 5566660 ~ 5573176 (-)
dhodh dhodh,LOC107730177 coding downstream 45553 5537052 ~ 5545521 (-)
hp LOC108270509 coding downstream 81132 5505917 ~ 5509942 (-)
dpep1 dpep1,LOC107730179 coding downstream 109787 5465673 ~ 5481287 (-)
LOC113536779 LOC108271307 coding downstream 138733 5434667 ~ 5452341 (-)
sos1 sos1,LOC106564790 coding upstream 47767 5712448 ~ 5760722 (-)
LOC113536391 eif4a2,LOC107568626,LOC108267852,LOC107593804,LOC105889495 coding upstream 108876 5773557 ~ 5781153 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding upstream 116544 5781225 ~ 5786544 (-)
srsf11 srsf11,LOC103035453 coding upstream 166070 5830751 ~ 5843843 (-)
rbbp9 rbbp9 coding upstream 189696 5854377 ~ 5858326 (-)
G176354 NA non-coding downstream 183975 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 477806 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 743933 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 750381 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 854658 4732382 ~ 4736416 (-)
G176817 NA non-coding upstream 418147 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 507517 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 519654 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 596116 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 692893 6357574 ~ 6358087 (-)
trip4 trip4 other downstream 394256 5139610 ~ 5196818 (-)
G176307 NA other downstream 510179 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1086745 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1594621 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1681181 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 31699 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1192074 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1815741 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1915753 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2011235 7675916 ~ 7764430 (-)

Expression


Co-expression Network