tomm20b (tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505)


Basic Information

Item Value
gene id tomm20b
gene name tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7484243 ~ 7492243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930576.2
CGGGGTCCTTCCTCTCCTCGTCTAGCCGAGGGTCATGTACAAAATCGCATAGCAACCTTCTGCCGTCAAGATAAGCTCTGTTTTAATTAGACGTATTTAGTTGTACATTGTTTGAAGACATGATGGGCGGCAGAACGAGTGCGATAGCGGCTGGTGTCGGCGCGGCGCTTTTCGTCGGTTACTGTATCTATTTCGACAGGAAGCGAAGGAGCGACCCAAACTTCAAGAGCAAGCTGAGAGAACGAAGGAGGAAGCAGAAAGCAGCACAGGAGAAAGCAGGACTGTCACGGCTACCGGATTTGAAGGATGCCGAAGCTGTTCAGAAGTTCTTCTTGGAAGAGATTCAGCTGGGAGAAGAGCTGTTGGCGCAGGGAGACTATGAGAAAGGAGTGGACCACCTGACCAATGCCATAGCAGTGTGTGGTCAGCCTCAGCAGCTCCTCCAGGTGTTGCAGCAGACTCTGCCTCCACCCGTCTTCCAGATGCTCCTCACCAAACTGCCCACCATCAGCCAGCGCATCGTCAGTGCACAGAGCTTGAGCGACGACGACATTGAATAAGACGAGGCCCTTTTAAACACATGACCCTCCCTCAGTGCAACCTTCTCTCAGCAGTTTCACTCCTCCATGTTTAAATTACTCTTTCTTCCTATCCATTGTGCAAAACAGCCATCAAACAAACCCCCTTCCCCatagaaaatatgaaaagattTTCCTCAAAGGCAACATGAGCCTGTAAATGATATCATCAGATGTTAGAAGTGTCTTTCAGTGTTTTGGCAAcatttaactgtattttattggaaaaagtGATTTAGAGGTTTGTGCTGTCCACACACAGCAGTTACTGTTTTTGAATGTTGTATAAACGGATGAGAACGAAGCATGATCTTCTGATTTCtttatcacagaaaaaaatccaagtcAGCAAATATGCAAAGCACATTCATAACAGTTCCTGTGTCATGGACAAAAGGTTTACGTGACCCGACTCAATCCTGTAATCCCCGTGCACTGCACATTTATGCTAAAACACTGACTCTGCTTATGAAGGCTTTTCATAGTTAACTGATGAGAAGTATGTGTAGGAAAAAACACAAACGTGCAGTCAGTAGAGTTAGCAAAGGTCAGACCTCTAGTCTTATTTTGTTATCaagaattgtgtaaaaaaaaagaaagcaagcaagcaagcagtGGACTGAACTAGAGGTGTGTATCTGGACCGGGATAGCAGAGGAACCAAGTAAAAATTTGCATGAGGTTTTTAAGTCTCGTGGGAGTTGGCCTCAACCTCAACTAGTAAGGCCATGTTCTTTAACATGAGCGCAAAATGGATGTGGTGCTCATACAATGTTTAccatcattttcatatttatcattcgtcttcagtatcttctttatcctggtcagagtccttgtggtttaaatgacttatttctttatattttaggGAAATTGATGCAGCTAAGTTAATTACTAAGTACAAACAGtctgggattggtcaaaccttctgtgagggtgggcaggattggtcataagctgcattcaactaaaacATCTAAATCAAAATTTCCAATCTCCGACTGGGACAACTTGGAATtcctcaacttggaattcctactgGAAATTTCTCCTCAACCTTGAGTTCAGCATATGATGGCATGtcagcatggctgctcacactgtCCTCGAGAAATAAAACGACACTTTGCTACTTTAAATGGGTTAACAatagtatttactttagatcaatcaacataagacacattagttggttaaatctataacactgaccctACAGgttgctgttttgagaaagtaaatacatcataaactcaCTAATGTTGGCTGACTTGGtgctaacaaaacacactcTTTCATCAAGGTGTCCATGGTTTTTCCCAGCTCAAAGAAATTGATGAAATTCTGAGTTcagacttcccacttctgagtcAAATTTCTGTGGGGGTGGgtgtggatggaaaaaaaaaa

Function

symbol description
tomm20b Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).
tomm20 Enables protein-transporting ATPase activity and unfolded protein binding activity. Involved in protein targeting to mitochondrion. Located in mitochondria-associated endoplasmic reticulum membrane and mitochondrial outer membrane.

NR:

description
PREDICTED: mitochondrial import receptor subunit TOM20 homolog

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17770 TOM20; mitochondrial import receptor subunit TOM20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930576.2 True 1991 mRNA 0.43 5 7484243 7492243

Neighbor

gene id symbol gene type direction distance location
map1lc3c map1lc3c,LOC107702025 coding upstream 122313 7356919 ~ 7361930 (+)
opn6a LOC108271086 coding upstream 194726 7282097 ~ 7289517 (+)
eif4a3 eif4a3 coding upstream 204861 7272843 ~ 7279382 (+)
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 217914 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 237068 7239467 ~ 7247175 (+)
tbce tbce coding downstream 8835 7501078 ~ 7513789 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 60730 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 109983 7602226 ~ 7602297 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding downstream 289418 7781661 ~ 7794628 (+)
LOC113536658 akap13 coding downstream 352430 7844673 ~ 7925739 (+)
G177520 NA non-coding upstream 25486 7458538 ~ 7458757 (+)
G177518 NA non-coding upstream 27638 7455553 ~ 7456605 (+)
G177517 NA non-coding upstream 28773 7455242 ~ 7455470 (+)
G177513 NA non-coding upstream 34566 7449476 ~ 7449677 (+)
LOC117598442 NA non-coding upstream 38956 7443017 ~ 7445287 (+)
G177580 NA non-coding downstream 22573 7514816 ~ 7516891 (+)
G177594 NA non-coding downstream 55123 7547366 ~ 7547831 (+)
G177630 NA non-coding downstream 181273 7673516 ~ 7674470 (+)
G177628 NA non-coding downstream 183622 7675865 ~ 7676699 (+)
G177751 NA non-coding downstream 323820 7816063 ~ 7816610 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 212923 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 351775 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2823107 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2839045 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 3184876 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 751112 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 752709 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 755773 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 761178 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3318427 10810670 ~ 10850923 (+)

Expression


Co-expression Network