srsf11 (srsf11,LOC103035453)


Basic Information

Item Value
gene id srsf11
gene name srsf11,LOC103035453
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5830751 ~ 5843843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930587.2
aTTAAACTTTCAGTCTTCGCCTTGAGGAGGTCCTGGTGAAAACAGGAACATTTGTAGAGCGTTAAGTCgtctgtataaaaataataataataataataaaaaagaaaagggaaaaaaaaagaaattagcaTAAAAAATTTTTGGATCTGAATTTAACGAACTGCAGTGTGCGCGAGACACATTAACGCGCGCATGACCTGACCGTTGAAAGCGCGAGCTGTTTGAAATTTCGGGCTCTCACGAGCTAAGGCTCATtcgctagttagctagctagctaggtggCTACCGTTAGCTGCTCGGCTAAGAGGAATAACAACAGTAAGAATAATAATGAGCTCCAGCACTAAAGTGGTCCAGGTGACCAACGTGTCTCCGAGCGCGACCTCGGAGCAGATGAGGACTCTGTTCGGCTTCCTGGGAAACATCGACGAGCTCAAACTGTTCCCACCAGATGATTCTCCCTTGCCTGTGACTTCCCGTGTCTGTTTTGTAAAGTTCCTCGAATCTGAATCAGTTGGCGTTTCGCAGCATCTGACGAACACAGTCTTCGTGGACAGAGCCTTGATCGTCGTCCCATTCGCTGAAGGAGTGATCCCCGATGAGTCCAAAGCTCTGTCGCTGATGGCTCCAGCCAACGCCGTCGCAGGAATGTTGCCAGGCGGCGGGCTTCTCCCCACACCCACTCCAGTGCCATCTATTGGTGGTGTTCCTCTTGGCTCTCTGGGTGGGCCTGGCATGGATGCTATGGCAGCTTTAGGCATTCCTGGACCCAATATGAACCCTCAGTCTCTGTCGGCGGAGCAGATTATGAAACTCATGGCGTCAATGGATCCCAAGTTAAATCCATTGGCTGCTGGTTTAAACCTAAACGCTGGACTAAAGGCAGATGCGTCGAACAAGGAGATTGAGGAGGCCATGAAGAGGGTGAGAGAGGCCCAGTCTCTGATCTCGGCTGCCATCGAGCCTGGAAatAAGAAGGATGACAAAAGGAAGCATTCAAGGTCGAGGTCAAGGTCACGGAAGAAGCGATCGAGGTCTCGCTCCAAATACAGGCGTTCCAAGAGCCGGTCACGGCGACGGTCTCGCTCCAGGAGCAAGAGGAGGTCTAAGAGCCCCCGCAGGAGGAGATCTCACTCTAAAGACAAGAGGAAGCGCTCCAGGTCAAGGGATCGGAGAAAGCGCTCGAAAACTCCTCCGAAGAGCTACAGCAGCGGCAGACGCTCCCGCAGCACCAGCCGCAAACGGCACAGGAGGAGCCGCAGCATCTCCCACTCACCGAAAAAGTCCAGATCTCCAAAGAGGAGGCTCTCTAGATCTCCTTCTCCCAGGAGGCataagaaggaaaagaagaaggacAAGGAACGCGAAAGAGACCGGGACAGAAAAGAAGACCAAAACCGAGACAAGAGAGAACGTTCCACCAGCAAGAAGAGCAAAGACAAGGAGAAGGAGCGAGACAGGAAGTCAGACGGCGAGAAGAGCGACGTGAAGGTGATCCGGGATTATGATGAAGAAGAGCAGGGCTACGACAGCGAACATGAGGAAGAGCGGGAAAGGAGCCCAGACATGGCGCCGTCTCCGCACGCCGACGGCGCTGGGAGGGGAGAGTCAGACCAACACAGCGACGAGCAGCAGGACGAAGACATGGACATGAGTGACTGATGGCATGCACAGGAGCAGCACATGATTCTGACAtaccttttaaaaaatttgctCATGTAACACTTATGGTTATAAATTAAAAGTGATAGTTTGGCCAAAAATTAAGTTTCTTTAATTTTTCCCTTACAGCAAATGTAGTCAGTTAGACCAGACGTGTTTGGTGTCCACAGTCTGCTCctttagttttgtactggaATGAGCCAAATGATGtgttttgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgatgattcagGTGTTCAGACGTCTGGCTGATCAGCTACATTTGGAATAAAAGGAGCATTGTGTTAACGTCACAACTATCACTTTAAGGTTATTCACTGCGGAGCTGATGttattgatgaaaaaataatgtCGGGATATTTTCCATCACATTCACTAGAATGTTCCTTTTATGTGACTACATCTCCCTAAATACTGCTGTACTCACCTGtaaaatgtagttttaattcttttaatattCTGCCATCGATCTTTCAgtacttttttcagtgtaaaaatCTATCATCGGAATATTTGTGTGCTGATTAGTTATTCTCATTAAACAAATCTGACTCGCTTTCCATTTCACACAAGTTAATCATATATAAAAATCTGACGTGCTGCGTGTGACACTTCTTACTGTCGAAAGCTGGGGAGTGTTTGCAGGGGTGCTGTGGAAAAAACACTGCACttggctttttttaatttctgatttaatttaaagttacaaCTGCTAATGTTACTGTGAATATTACTGGTCAGTAggcttgattttgattttttttttccctgctcgAAGGTTACCATTTAAAACAATTGCGTTAAACAATTTAATCATCCACAACCAATAGGAACGGGGaaacatttccaccatttcaggatTAAGAAGGAGAGAGATATGGGAGAGAGTAATATTATTACTGACCGTGCAGATGGGAGTGTAAATTGGATTTGTTGAGATGATTAAATCGatatatcgcacaagcctactGGTCAAATATGTTTGTtgcattttggttttttttttttttgcacagccATGTATTTTTTCCATATCCCCAGATTGTAGATTTCCTTAGAGAATGGTTAATTATGGTTATTATTTGCAGTGTTGTGAAAGTTGAAAATAAAACTTCAAGTCTTGTGatttattactttaa
>XM_026930588.2
GAAGCAGTCGACGTGAGTCGCTTGTTCATAAAACAGCTAATGAAAATTGAAAGCAGCTCCCCTGGACAACCGGCTGTGTGCTTGCTTACATTTGGTTCATGACTTAGAAAAAGTTCAGGAGTGATCCCCGATGAGTCCAAAGCTCTGTCGCTGATGGCTCCAGCCAACGCCGTCGCAGGAATGTTGCCAGGCGGCGGGCTTCTCCCCACACCCACTCCAGTGCCATCTATTGGTGGTGTTCCTCTTGGCTCTCTGGGTGGGCCTGGCATGGATGCTATGGCAGCTTTAGGCATTCCTGGACCCAATATGAACCCTCAGTCTCTGTCGGCGGAGCAGATTATGAAACTCATGGCGTCAATGGATCCCAAGTTAAATCCATTGGCTGCTGGTTTAAACCTAAACGCTGGACTAAAGGCAGATGCGTCGAACAAGGAGATTGAGGAGGCCATGAAGAGGGTGAGAGAGGCCCAGTCTCTGATCTCGGCTGCCATCGAGCCTGGAAatAAGAAGGATGACAAAAGGAAGCATTCAAGGTCGAGGTCAAGGTCACGGAAGAAGCGATCGAGGTCTCGCTCCAAATACAGGCGTTCCAAGAGCCGGTCACGGCGACGGTCTCGCTCCAGGAGCAAGAGGAGGTCTAAGAGCCCCCGCAGGAGGAGATCTCACTCTAAAGACAAGAGGAAGCGCTCCAGGTCAAGGGATCGGAGAAAGCGCTCGAAAACTCCTCCGAAGAGCTACAGCAGCGGCAGACGCTCCCGCAGCACCAGCCGCAAACGGCACAGGAGGAGCCGCAGCATCTCCCACTCACCGAAAAAGTCCAGATCTCCAAAGAGGAGGCTCTCTAGATCTCCTTCTCCCAGGAGGCataagaaggaaaagaagaaggacAAGGAACGCGAAAGAGACCGGGACAGAAAAGAAGACCAAAACCGAGACAAGAGAGAACGTTCCACCAGCAAGAAGAGCAAAGACAAGGAGAAGGAGCGAGACAGGAAGTCAGACGGCGAGAAGAGCGACGTGAAGGTGATCCGGGATTATGATGAAGAAGAGCAGGGCTACGACAGCGAACATGAGGAAGAGCGGGAAAGGAGCCCAGACATGGCGCCGTCTCCGCACGCCGACGGCGCTGGGAGGGGAGAGTCAGACCAACACAGCGACGAGCAGCAGGACGAAGACATGGACATGAGTGACTGATGGCATGCACAGGAGCAGCACATGATTCTGACAtaccttttaaaaaatttgctCATGTAACACTTATGGTTATAAATTAAAAGTGATAGTTTGGCCAAAAATTAAGTTTCTTTAATTTTTCCCTTACAGCAAATGTAGTCAGTTAGACCAGACGTGTTTGGTGTCCACAGTCTGCTCctttagttttgtactggaATGAGCCAAATGATGtgttttgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgatgattcagGTGTTCAGACGTCTGGCTGATCAGCTACATTTGGAATAAAAGGAGCATTGTGTTAACGTCACAACTATCACTTTAAGGTTATTCACTGCGGAGCTGATGttattgatgaaaaaataatgtCGGGATATTTTCCATCACATTCACTAGAATGTTCCTTTTATGTGACTACATCTCCCTAAATACTGCTGTACTCACCTGtaaaatgtagttttaattcttttaatattCTGCCATCGATCTTTCAgtacttttttcagtgtaaaaatCTATCATCGGAATATTTGTGTGCTGATTAGTTATTCTCATTAAACAAATCTGACTCGCTTTCCATTTCACACAAGTTAATCATATATAAAAATCTGACGTGCTGCGTGTGACACTTCTTACTGTCGAAAGCTGGGGAGTGTTTGCAGGGGTGCTGTGGAAAAAACACTGCACttggctttttttaatttctgatttaatttaaagttacaaCTGCTAATGTTACTGTGAATATTACTGGTCAGTAggcttgattttgattttttttttccctgctcgAAGGTTACCATTTAAAACAATTGCGTTAAACAATTTAATCATCCACAACCAATAGGAACGGGGaaacatttccaccatttcaggatTAAGAAGGAGAGAGATATGGGAGAGAGTAATATTATTACTGACCGTGCAGATGGGAGTGTAAATTGGATTTGTTGAGATGATTAAATCGatatatcgcacaagcctactGGTCAAATATGTTTGTtgcattttggttttttttttttttgcacagccATGTATTTTTTCCATATCCCCAGATTGTAGATTTCCTTAGAGAATGGTTAATTATGGTTATTATTTGCAGTGTTGTGAAAGTTGAAAATAAAACTTCAAGTCTTGTGatttattactttaa

Function

symbol description
srsf11 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Orthologous to human SRSF11 (serine and arginine rich splicing factor 11).

NR:

description
serine/arginine-rich splicing factor 11-like isoform X2

GO: NA

KEGG:

id description
K12899 SRSF11, SFRS11; serine/arginine-rich splicing factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930587.2 True 2844 mRNA 0.45 12 5830751 5843843
XM_026930588.2 False 2376 mRNA 0.45 11 5830751 5838279

Neighbor

gene id symbol gene type direction distance location
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding downstream 44207 5781225 ~ 5786544 (-)
LOC113536391 eif4a2,LOC107568626,LOC108267852,LOC107593804,LOC105889495 coding downstream 49598 5773557 ~ 5781153 (-)
sos1 sos1,LOC106564790 coding downstream 70029 5712448 ~ 5760722 (-)
LOC113536546 hnrnpll,hnrll,LOC106564787 coding downstream 166070 5591074 ~ 5664681 (-)
ist1 ist1,LOC107705324,LOC107730168,LOC107600347 coding downstream 257575 5566660 ~ 5573176 (-)
rbbp9 rbbp9 coding upstream 10534 5854377 ~ 5858326 (-)
LOC113536410 pcdh20 coding upstream 80366 5924209 ~ 5929129 (-)
eml6 eml6,LOC107597181 coding upstream 105205 5949048 ~ 5998137 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding upstream 157848 6001691 ~ 6084807 (-)
LOC113536414 c10h2orf73 coding upstream 241829 6085672 ~ 6094778 (-)
G176556 NA non-coding downstream 115731 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 423652 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 717483 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 983610 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 990058 4839988 ~ 4840693 (-)
G176817 NA non-coding upstream 238985 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 328355 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 340492 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 416954 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 513731 6357574 ~ 6358087 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 122447 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 633933 5139610 ~ 5196818 (-)
G176307 NA other downstream 749856 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1326422 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1834298 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 1012912 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1636579 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1736591 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1832073 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2400806 8244649 ~ 8244721 (-)

Expression


Co-expression Network