clcn4 (clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374)


Basic Information

Item Value
gene id clcn4
gene name clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6831248 ~ 6845245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930606.2
TTGCATGCTGGGAAAGTGACGGCTATTTTATTTACCAGCTTCTAGCTCGCTGAATTATTATATGGAAGCCATAAAGTGGCGCTTAAAacagttattgtttttttataataatggtTGGCTACATAAACAGATATAAGTGAAGAGATATACAGCAGTAATTTCGGGAGAAAGAATGGCGGAGGCAGAAGTGATCAGCAATGCCACCCCCACAGAGGAGATGAACGGGGCTGGGAACCTGATGGACTTCCTAGATGAGCCCATTCCTGATGTGGGCACATATGAGGATTTCCACACCATCGACTGGCTCAGGGAGAAATCCAGAGACACTGACCGCCACAGGAAGATTCGAAACAGGAGGAAGGAGTCTGTCTGGGAGTTTGTAAAGAGCCTACTGGATGCCTGGTCAGGATGGGTGGTCATGCTGCTTATCGGACTACTGTCAGGCACTTTGGCTGGAGTGATAGACCTGGCTGTGGACTGGATGACAGACCTCAAGGAGGGAGTTTGTCTATCTGCATTCTGGTATAGCCATGAGCAGTGCTGTTGGACATCCAACGAGACTACGTTCGCCGACAGGGACAAATGCCCTCAGTGGCAGAAATGGGCCGAGTTGATGACAGGACACACTGAGGGTGCTGGAGCATATGTGTTAAATTACTTCCTGTACGTGCTATGGGCACTGTTCTTCTCCTTTCTGGCTGTGTCTCTGGTGCGAGTGTTTGCCCCATATGCTTGTGGATCAGGAATACCAGAGATTAAGACAATCCTGAGTGGGTTTATAATCCGAGGTTACCTGGGGAAGTGGACTCTGCTGATTAAGACAGTCACTCTGGTGCTGGCCGTGTCGTCCGGTCTCAGTCTGGGAAAGGAAGGACCACTGGTGCACGTGGCCTGCTGCTGTGGAAACCTCTTCTGCAGCCTTTTCTCTAAATACAGCAGGAATGAAGGCAAACGTAGAGAGGTTTTATCCGCTGCTGCGGCTGCTGGAGTGTCTGTGGCGTTTGGTGCTCCAATAGGCGGGGTGCTTTTCAGCTTAGAGGAGGTGAGTTATTACTTCCCTCTTAAGACTCTGTGGCGCTCGTTCTTTGCTGCACTGGTTGCCGCCTTCACACTGCGCTCTATAAACCCATTCGGCAACAACCGCCTGGTGCTATTCTATGTGGAATATCACACACCATGGTACATGGCCGAGCTAGTTCCCTTCATCCTGCTTGGGGTATTCGGAGGCCTCTGGGGCACCCTGTTTATCCGGGGGAACATTGCCTGGTGCCGCCGCAGGAAGACCACTCGCCTAGGCAAGTACCCTGTCCTGGAGGTAATAGTGGTGACGGGCATCACAGCCATCTTGGCTTTCCCCAACCCGTACACACGCCGCAGCACCAGCGAGCTCATCTCTGAGTTATTTAATGACTGTGGTGCTCTCGAGTCCTCCCAACTCTGCGATTACATCAATAACCCCAATATGAGCCGTCCAGAGGATGATATACCAGACAGACCAGCCGGGCCAGGGGTCTACAGCGCCCTCTGGCAGTTGGCACTTGCTTTGATCTTTAAGATCGTCATCACCATCTTTACTTTTGGCATGAAGATCCCATCAGGTTTGTTCATCCCCAGTATGGCAGTGGGAGCTATTGCTGGACGGATAGTGGGCATCGCCGTGGAGCAGATGGCCTACCACCACCATGACTGGATAATCTTTAAGAACTGGTGTCGCCCTGGTGCAGACTGCGTCACCCCCGGCCTCTACGCCATGGTGGGGGCCGCAGCATGTCTCGGTGGAGTCACTCGGATGACTGTGTCTCTGGTGGTCATCATGTTCGAGCTGACTGGTGGGTTAGAGTACATTGTGCCGCTAATGGCCGCTGCTGTTACAAGTAAGTGGGTGGCGGATGCGTTCAGTAAAGAGGGAATTTATGAGGCACACATCCGCCTGAACGGTTACCCGTACCTGGACCAGGACGAGTTCACCCACCGCACACTGGCCACTGATGTGATGCGACCACGCAGGAATGAGCCTCCACTCTCCGTCCTCACACAGGACTCCACCACAGTGGAGGATGTAGAGATGCTCATCAAAGAGACGGACTACAACGGCTTCCCTGTGGTCGTCTCGCGCGAGTCCGAGAGACTCATCGGTTTTGTCCAGCGCAGGGATCTGACCCTGGCTATCAAGACTGCACGTCAGAAGCAGGATGGCGTGGTGAGTAACTCAGTAGTGTACTTCACTGAGGATGCACCCCAGCTGCCAGCCTCAAACCCTCAGCCCCTGAAGCTTAGGCGAATCCTCAACCTCAGTCCCTTTACCGTCACTGACCACACACCTATGGAGACTGTGGTGGACATCTTTCGCAAGCTCGGCCTTCGCCAGTGCCTTGTCACTCGCAGTGGACGGTTACTCGGGATCATCACTAAGAAAGATGTGCTACGACACATGGCCCAAATGATGAACCAGGACCCTGAGTCAATCATGTTCAACTAAAAGCCCTTCTCCATCTCTGACCTTTCACCTTGTAAGGCCAGTGACCTCATGAACCTTACGGACTGTAAATAGTGCAACACTACTGTAACTGCAAGTATTTACTCGTGTAGAAGTGTAATACCAAACCCTTATGTGTTTTGTTGCCAAAAAAGATCAGAATCTGAAATGAAGACCTTGGATGATGTGCATGGCAACGTTTAGAGGCAATCAGGTACCATGAGATACAGTCACATATTCTCTCTTTACAGTATTTGATGCTTGTTGTATGAAACCCAGTCTGTTGTAAATGACAGTGGATCTTGTGTAAAATACTCGaagataatataatatgatgtcAGAAGACAGTAATATGCTTCCAGCTGCCCTGATTAGGATTCTTTGTTATTAAAAGGTCAGTGGACTTGTAACAATCTTTACATAGCCTCACAAAGTTGCTGTGCATCaggtgcagaaaaaaaaggtcaagTATTTTAAGTTACTGTAACTTGTGTTGATCTTACTGCTGCTgccatattcattttttattaacataaatcATTAGACTTTGCTATTATAAAATATTCCCTGTTATAACGGATGTGacaaactgaaacaaaactGGTACAGATCATAAAAGATACCTTTAAGTAGTTTTACTCTTACACTCACAAAACAAATCAATCCACATTGAAGGTAGTTTATTTTATGCAGGCTTTAACTACAGGATTAAACATAAGAtgctgattatattatattatatgattaGCTCTTAAATTTTAGGGATTAGGGTAAGTGTCTGCATTTTTGCACCACGGAACAGTAGCTTGTTAAGAATGGTGATGTGACAACAGATCTGCCTTAAATATCAGGATTATGGTAGTACTACATTTTGCTCATATTTGTTAAtttaatgtgaatatttatttagatcTGATATAAAAAAGTCAGATGTTGTGTTACATTTTTTGTGACTGTGGTaagtttgtatatttttatgtgCACTTTCTGCATTTGCTTAGTACTAAAATACAAAATGGCAGAGTTGTATTAAATGGTACGAACCTAATTGTTTTAATTGCCAATTATATGCAAAAACCtctaatgaattaataatttaaaaaaaggaaaagggaaTTTGCTCAATTTCTGcttataattattaaatcatttaatcaA

Function

symbol description
clcn4 Predicted to enable solute:proton antiporter activity and voltage-gated chloride channel activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; early endosome; and synaptic vesicle. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; gill; heart; and immune system. Human ortholog(s) of this gene implicated in Raynaud-Claes syndrome. Orthologous to human CLCN4 (chloride voltage-gated channel 4).

NR:

description
PREDICTED: H(+)/Cl(-) exchange transporter 4

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930606.2 True 3634 mRNA 0.46 12 6831248 6845245

Neighbor

gene id symbol gene type direction distance location
LOC113536768 LOC108270562 coding downstream 14535 6809823 ~ 6816713 (-)
swap70a LOC108271193 coding downstream 24218 6794539 ~ 6807030 (-)
adma adm coding downstream 180113 6648748 ~ 6651135 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding downstream 188125 6621904 ~ 6643123 (-)
ctr9 ctr9 coding downstream 263491 6555719 ~ 6567757 (-)
shroom2b LOC108271435,LOC105905657 coding upstream 16106 6861351 ~ 6886413 (-)
mfn1b mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155 coding upstream 55003 6900248 ~ 6913318 (-)
si:ch73-100l22.3 LOC108271015 coding upstream 95523 6940768 ~ 6954744 (-)
mafgb mafg,mafgb coding upstream 116391 6961636 ~ 6979476 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding upstream 143058 6988303 ~ 6995568 (-)
G177097 NA non-coding downstream 92640 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 241952 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 279666 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 279986 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 286178 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 213287 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 292384 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 310983 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 422316 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 444640 7289885 ~ 7290092 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1122944 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1634430 5139610 ~ 5196818 (-)
G176307 NA other downstream 1750353 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2326919 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2834795 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 11510 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 635177 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 735189 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 830671 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1399404 8244649 ~ 8244721 (-)

Expression


Co-expression Network