traf3ip2b (LOC108270566)


Basic Information

Item Value
gene id traf3ip2b
gene name LOC108270566
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6823407 ~ 6831740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930607.2
TGGTGCATTAAtttcactaaacatttaatttacacaaaacacacacacaaaatagatACACACATGCTCTGACTGGCGCTCTGACCATTCACCCATCCTCAACTCCCACAGCCACATGGCTCATCAGGGTCAACATCACAAATCACTTAACTGTCCTGAGGAAAACGATGAGACACGGAGTGAGGAGTTCCAATCTGGACTTCTCCTAGCACCAAAGACCTCTCTCAATCACTCTGTTGCCCTAAGCAAGGTGGTGCAAGGACAGACTTTTAGCCACCAACACAACCCTATGAGGCCCAGTCTTACCCAGTCCTGTGTAAAATTGATCCAGCATGATCAATTAACCAGACCCTGCCAACAGGTCCTGTACCCCAACCAAGTTGATAGTGACAGAAGACATCTGGGGGTTCATCGTGGCTGGCACTACCCCACCTACAATAGCAGAAGTCCTGGAGGAGGTCAAACAAGCAGTCTACCATCGTACTTGCCCTCTACTGAGTACCAGACTTACCTGGGGGCTGGCTGTGTTTTTCCCAGTTGGCATCACTCCCATCCAGGTACACACAGCCTCAGCCTCAACAGTCTAGAACAGCCTGGCTCTCTGCACTCTTTTCTCACAGCTGGATCTTCCGTACACACCAACCAGTTGATGCCATTACCTGACCTCCACTATGGTCCAGTTCCACACCAAGTAGACCCTCAGGATTATCTCATCCCCAGGCCTGGATATCAGCTGCCCCACAgattcaaagATCCTGAGCTATTAGGATACACAGATCCAGGTAGCACTAAAAATGGTGCTGTTTCTTGCAGACCTGGCCAGAAAAGTCCCTGCAGCACACAGCTTTCTCAGGAACAGAgaaaagtgtTTGTTACATATGAGGTGGACAGCGAAGATCATCTTAAAGAGGTCATCAAGTTTGTGGCCTTGTTGAGGAACAATGGCTTTGACACACACATTGATGTTTTTGAACAGCAGCTCTACAGCATCAGTAAGATTGATTGCATGGAAAGATATCTCAATGAGAAAGATTACATGATTATCATGGTCATTAGTCTGAAGTATTTTGAGACAGTAAAAGGTGCTGGTGTAGGTGTGGACTGTGATGAGAGGACCTCAAACACTGTGTACATCCACAAGCAGCTTCAGAGTGAATTCATTCAGAATGGCTGCAGAAACTTCAGGGTTGTTCCTGTGCTTTTTCCTGGGGCTAAAAAGAGCCACGTTCCCTTTTGGCTGCAGAACACATATCTGTACAGCTGGCCTGGGGACCGGGACGATATTCTGCGCCGGCTCATGCGAGTGGAGAAGTACAACCCTCCACCTGTCGGCTCACTGCCCACCATCTTCTCCACGCCTATCTAACTAGCCCAGACGCAGTAgggacaacaacaacagtgcAGCAGTGTCTTAAAACTAAAATTTGGCCAGCTGTATGATGGGACATGCACAGTCAGTATAGATACAGGTGTTAAATGTCATGCTTGCCATCATGTATAAGAAGAGATAAGAAGTTATATGTACATTTACCAAATCTGCATTTTAGCTAAGAAAAGTGGGTTACTCACATATATAGGAATATTTGGAAACAGGTGAGGAAAACAGTCTTCAAGAAAGATGTCCAGAAGTtgattaaatgatttaataattataagCAGAAATTGAGCAAAttcccttttcctttttttaaattattaattcattagaGGTTTTTGCATATAATTGGCAATTAAAACAATTAGGTTCGTACCATTTAATACAACTCTGCCATTTTGTATTTTAGTACTAAGCAAATGCAGAAAGTGcacataaaaatatacaaacttACCACAGTCACAAAAAATGTAACACAACATCTGACTTTTTTATATCAgatctaaataaatattcacattaaaTTAACAAATATGAGCAAAATGTAGTACTACCATAATCCTGATATTTAAGGCAGATCTGTTGTCACATCACCATTCTTAACAAGCTACTGTTCCGTGGTGCAAAAATGCAGACACTTACCCTAATCCCTAAAATTTAAGAGCtaatcatataatataatataatcagcaTCTTATGTTTAATCCTGTAGTTAAAGCCTGCATAAAATAAACTACCTTCAATGTG

Function

NR:

description
PREDICTED: adapter protein CIKS-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930607.2 True 2122 mRNA 0.42 9 6823407 6831740

Neighbor

gene id symbol gene type direction distance location
LOC113536733 LOC108270651,LOC108270616 coding upstream 1294 6820804 ~ 6822113 (+)
sbf2 sbf2,LOC106587205,LOC106562098 coding upstream 41208 6656484 ~ 6782199 (+)
lyve1a NA coding upstream 200784 6618241 ~ 6622623 (+)
mrvi1 mrvi1 coding upstream 209042 6578994 ~ 6614365 (+)
LOC113536770 mrvi1 coding upstream 244412 6570292 ~ 6578995 (+)
LOC113536670 LOC108270652,LOC108443884 coding downstream 19700 6851440 ~ 6853641 (+)
LOC113536389 gnb4,LOC108270972,LOC108443894,LOC108440866 coding downstream 58448 6890188 ~ 6900065 (+)
trappc10 trappc10,LOC107713874,LOC102780331 coding downstream 85367 6917107 ~ 6940664 (+)
LOC117598414 NA coding downstream 119354 6951094 ~ 6953455 (+)
notum1b notum,LOC108443886,LOC108438914,LOC107732149 coding downstream 226748 7058488 ~ 7075682 (+)
G176964 NA non-coding upstream 268400 6554594 ~ 6555007 (+)
LOC117598391 NA non-coding upstream 723380 6094203 ~ 6100027 (+)
G176746 NA non-coding upstream 747980 6070947 ~ 6075427 (+)
G176700 NA non-coding upstream 871252 5951814 ~ 5952155 (+)
G176608 NA non-coding upstream 966165 5855525 ~ 5857242 (+)
G177159 NA non-coding downstream 27564 6859304 ~ 6860230 (+)
LOC113536609 NA non-coding downstream 32085 6863825 ~ 6875047 (+)
G177165 NA non-coding downstream 53838 6885578 ~ 6886403 (+)
G177141 NA non-coding downstream 73229 6904969 ~ 6907752 (+)
G177180 NA non-coding downstream 121903 6953643 ~ 6960207 (+)
G175977 pacsin3 other upstream 2162271 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2178209 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2524040 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 3165117 3647355 ~ 3658290 (+)
pth1b NA other upstream 3176292 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 290645 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 436091 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 1411615 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 1413212 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 1416276 8248016 ~ 8248088 (+)

Expression


Co-expression Network