lins1 (lins1)


Basic Information

Item Value
gene id lins1
gene name lins1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8995376 ~ 9001851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930618.2
GACGTCACAAAGTGCGACTGTTTTCATTGCTCGTGCATGACAGTAGGGAAGAGCAATGTGCAAGATGTTTATCTCTGTTAATGCGTAATTAAAAAACTCAAGAGAAATTTGGATTAACTCCAACGCAGCGATTTTGTTCCTCTTTTATTCACTATGGACTTTTtgccatacacatacacatggacatggacatggaTGCACAGCATTCAGACTTACAGGCTGTGTTCACAGATGTACGGTCTGGACTTGTTCCTGCTATGAGCACTGAGGAGCTCGCAAGTCAGATTTCATCAGCCATAAACCATTCTTTGCACATTTTACTACAATCTCCACACGGCATGACAAGTGAAGACACAGAGATGACAGGCATGTTCCTTACACTTACTGGAAAAATCATCTCCAAGCTTACTTCAAAAAGTCTGCCACGAGACGTCAGCGTGTTCTATGAAGACGCCGTGAAGAGACTCTTTGGGGCCTCTAATCTGACAGCTGATCTTGTGTGTCTGATGAACTGCCAGGACAGGATGTTGTCTCATTTAGCTGCAAAATGCATGGCTTCTTTTGTCATATATGACATCGGTAATACTATTGGTAGCAACCGCGTGTGGACGACTGCCTTCACAGAAACATTTCAGAGCTCGGCTCCGAGCCGCGCCCTGGACACACACCTGTGGGCCCTGACAGACATGATTAAGAGGATAATGAAGTTAGACAGCATTAACAAACGAGagATTTTGATGAAACTTCTTGCTGATTTTGAGTCATCCCTCACTTCCTTGTATCCAAAGCTGCTCTTTCAAGACAATCCTGAACATACACATGCAGCAGAAAATGACAGAGACACTGTCGAGTTAGAAATCAGTGTATGTGCACTCCTGGACCTTGTCGAAGTCCTCAGTGCTGCGAGGCTAAGGCATGGCCTCTGCTCTTCCGTTCAGAGACTGGTGTTCCTCCAAACTTCAGCACTCCTCCATCTGACGCTCTCCAACATGAAGGAATTTGTAAAGAAACGAGCACTGCTTTTGCTGAAGCGGATTCTCGTTCAGAGAACAGGGGAGGAATGGGGTTTCGGTGAAAATCACTCTAAAGAGCGTGATGAGGAATATTCCACCGATTTGCTTCTGATGGCTGATGCCGTGCTCCAGGAAGTGGAAGCTGGTTGGCTCCGGAAGTTCCGTGTCAAAACTCAGGCGAGTTTCTTCGGTGGGAACAAAGTGAACGTTTCGGATGGAGAAATGAAAGATGCTGTGATGCTCAGGGCCGTGAGCCTGATTCTGATCAAGTGTCTGGAGATTAAAACTCGGCATGTTTCTACTCAAGGAGCTCACTGTGCCCTTGATGTTCAGCCTTGTCTTATGGAACTGCTGGCATTTCTCCAGCAGCAGGTGCTTCAGGTTAAAGCAGTCACACATCTCTGCTCTTGGATCTTAGTAGTGTTTGCAGACCAGGATGATGACCTGATAGAATCAGCCAAGGTTTTGATTACCTTGTATTTACATCAGAGAAGTTCGAGGTCCTCAGACCCTTCAGCATGTGAGTGGGGATGTAACCCTCATTGTCACTTTACTCTCCTACTCGGAAGTCTCTCCTTCGACCACACTGTCCTCCTGGACTTCCTCATTTCTGATGAAACCTGCTTCTTGGAGTACTGCGTACTCTACCTGAAGCACTTGTGCAACCACTGGCAAGATTTTTGTAATGCATGTTGTCGTATCGAAAACTctgagactgagacacacactctgTCCCTCCCACATTTTTCTGAAGCATCAGAAACATCACAACCTCGTGATGACCCTCAGTCTAAAGTTCCTGGATTTAGGCCAAGCCTGGTTGATTATGAGTGCTCAGAGGATTCTGAAGACGAAGACAGAAGCGTGTCAAACCTCCAGAAGAGAAGGAATGCTGAGGAACCAGTAGCAGAGATCAACATGAGTAAAGCAGGAGAACAGGCTGTGTGTGGATCAGCAGATACAGTGGAGAAAATAAGCACTGCCTCCCCTGTGGGTCTGAGTGGGAAGGTTGCGTTGTGCCTTACTGAGTTAAGGACTGTTATCACCCGACTTCACAGCAGGGGGCTATTCCCATACAACCCTACGTCTCTTCTTAAATTGCTGCGGGCTATTGAGACTAAAGGTCATTTGGAAAAACTAACAGCACCGCaacttaaataatttaaatgtctTAATGATGTACGGCCAAACATTATCTTCAGAGAAGACAAACCTCCTCTAACAAAACCCTGTTAACCACTGCAAATTGTTTTAtactattttatatacaaaGTACAGAATTGCATGAAATCATGAAAGCAAAGTCGACTTATTTTGTTTgagatgatgttttttttttttacttatgtAGCTGGgagtaataaatatttaaattca
>XM_034308738.1
GACGTCACAAAGTGCGACTGTTTTCATTGCTCGTGCATGACAGTAGGGAAGAGCAATGTGCAAGATGTTTATCTCTGTTAATGCGTAATTAAAAAACTCAAGAGAAATTTGGATTAACTCCAACGCAGCGATTTTGTTCCTCTTTTATTCACTATGGACTTATGTACGGTCTGGACTTGTTCCTGCTATGAGCACTGAGGAGCTCGCAAGTCAGATTTCATCAGCCATAAACCATTCTTTGCACATTTTACTACAATCTCCACACGGCATGACAAGTGAAGACACAGAGATGACAGGCATGTTCCTTACACTTACTGGAAAAATCATCTCCAAGCTTACTTCAAAAAGTCTGCCACGAGACGTCAGCGTGTTCTATGAAGACGCCGTGAAGAGACTCTTTGGGGCCTCTAATCTGACAGCTGATCTTGTGTGTCTGATGAACTGCCAGGACAGGATGTTGTCTCATTTAGCTGCAAAATGCATGGCTTCTTTTGTCATATATGACATCGGTAATACTATTGGTAGCAACCGCGTGTGGACGACTGCCTTCACAGAAACATTTCAGAGCTCGGCTCCGAGCCGCGCCCTGGACACACACCTGTGGGCCCTGACAGACATGATTAAGAGGATAATGAAGTTAGACAGCATTAACAAACGAGagATTTTGATGAAACTTCTTGCTGATTTTGAGTCATCCCTCACTTCCTTGTATCCAAAGCTGCTCTTTCAAGACAATCCTGAACATACACATGCAGCAGAAAATGACAGAGACACTGTCGAGTTAGAAATCAGTGTATGTGCACTCCTGGACCTTGTCGAAGTCCTCAGTGCTGCGAGGCTAAGGCATGGCCTCTGCTCTTCCGTTCAGAGACTGGTGTTCCTCCAAACTTCAGCACTCCTCCATCTGACGCTCTCCAACATGAAGGAATTTGTAAAGAAACGAGCACTGCTTTTGCTGAAGCGGATTCTCGTTCAGAGAACAGGGGAGGAATGGGGTTTCGGTGAAAATCACTCTAAAGAGCGTGATGAGGAATATTCCACCGATTTGCTTCTGATGGCTGATGCCGTGCTCCAGGAAGTGGAAGCTGGTTGGCTCCGGAAGTTCCGTGTCAAAACTCAGGCGAGTTTCTTCGGTGGGAACAAAGTGAACGTTTCGGATGGAGAAATGAAAGATGCTGTGATGCTCAGGGCCGTGAGCCTGATTCTGATCAAGTGTCTGGAGATTAAAACTCGGCATGTTTCTACTCAAGGAGCTCACTGTGCCCTTGATGTTCAGCCTTGTCTTATGGAACTGCTGGCATTTCTCCAGCAGCAGGTGCTTCAGGTTAAAGCAGTCACACATCTCTGCTCTTGGATCTTAGTAGTGTTTGCAGACCAGGATGATGACCTGATAGAATCAGCCAAGGTTTTGATTACCTTGTATTTACATCAGAGAAGTTCGAGGTCCTCAGACCCTTCAGCATGTGAGTGGGGATGTAACCCTCATTGTCACTTTACTCTCCTACTCGGAAGTCTCTCCTTCGACCACACTGTCCTCCTGGACTTCCTCATTTCTGATGAAACCTGCTTCTTGGAGTACTGCGTACTCTACCTGAAGCACTTGTGCAACCACTGGCAAGATTTTTGTAATGCATGTTGTCGTATCGAAAACTctgagactgagacacacactctgTCCCTCCCACATTTTTCTGAAGCATCAGAAACATCACAACCTCGTGATGACCCTCAGTCTAAAGTTCCTGGATTTAGGCCAAGCCTGGTTGATTATGAGTGCTCAGAGGATTCTGAAGACGAAGACAGAAGCGTGTCAAACCTCCAGAAGAGAAGGAATGCTGAGGAACCAGTAGCAGAGATCAACATGAGTAAAGCAGGAGAACAGGCTGTGTGTGGATCAGCAGATACAGTGGAGAAAATAAGCACTGCCTCCCCTGTGGGTCTGAGTGGGAAGGTTGCGTTGTGCCTTACTGAGTTAAGGACTGTTATCACCCGACTTCACAGCAGGGGGCTATTCCCATACAACCCTACGTCTCTTCTTAAATTGCTGCGGGCTATTGAGACTAAAGGTCATTTGGAAAAACTAACAGCACCGCaacttaaataatttaaatgtctTAATGATGTACGGCCAAACATTATCTTCAGAGAAGACAAACCTCCTCTAACAAAACCCTGTTAACCACTGCAAATTGTTTTAtactattttatatacaaaGTACAGAATTGCATGAAATCATGAAAGCAAAGTCGACTTATTTTGTTTgagatgatgttttttttttttacttatgtAGCTGGgagtaataaatatttaaattca

Function

symbol description
lins1 Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human LINS1 (lines homolog 1).

GO: NA

KEGG:

id description
K22533 LINS1; protein Lines

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930618.2 True 2390 mRNA 0.45 7 8995376 9001851
XM_034308738.1 False 2320 mRNA 0.45 7 8995376 9001851

Neighbor

gene id symbol gene type direction distance location
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 212534 8727720 ~ 8782842 (+)
selenos selenos coding upstream 271294 8718527 ~ 8724082 (+)
snrpa1 snrpa1 coding upstream 277547 8711155 ~ 8717829 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding upstream 293811 8631823 ~ 8701565 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding upstream 424208 8565280 ~ 8571168 (+)
cers3a cers3,LOC107692405 coding downstream 5518 9007369 ~ 9035454 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding downstream 37359 9039210 ~ 9189919 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 224596 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 334796 9336647 ~ 9349909 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 348345 9350196 ~ 9378551 (+)
G178383 NA non-coding upstream 11134 8982965 ~ 8984242 (+)
G178260 NA non-coding upstream 186432 8807605 ~ 8808944 (+)
G178192 NA non-coding upstream 405821 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 450901 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 473254 8514131 ~ 8522122 (+)
G178539 NA non-coding downstream 203606 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 275754 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 276036 9277887 ~ 9278116 (+)
G178761 NA non-coding downstream 297535 9299386 ~ 9299657 (+)
G178760 NA non-coding downstream 299143 9300994 ~ 9301338 (+)
LOC113536578 NA other upstream 724626 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 747288 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 750352 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 751728 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1724056 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1808819 10810670 ~ 10850923 (+)
G179632 NA other downstream 2094302 11096153 ~ 11098811 (+)
G179643 NA other downstream 2158495 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2426762 11428613 ~ 11430897 (+)
G180121 NA other downstream 3053107 12054958 ~ 12055749 (+)

Expression


Co-expression Network