cers3a (cers3,LOC107692405)


Basic Information

Item Value
gene id cers3a
gene name cers3,LOC107692405
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9007369 ~ 9035454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930620.2
GGTGTGCCTGTGAGGAATTCTAAACGAAGTGCATTTCTGTGTGATCAGAGCTGCGCATTGCTGTCATGCTCAGTTTACTCAGCGCCTCggcctttcacacacacacgcactgaaGTGAAGACTGCAACATCTGCTCAGGCAGagtGGGCGGGATGATTGGGACCATCTGCGAATGGTTCTGGTGGGACCGCCTCTGGCTGCCCGTCAACCTGACATGGGCAGATCTAGAAGACAAGGACGGCCGGGTCTACGCCAAAGTGTCTGACTTATACATAACTTTGCCTTACTCACTAGGTTTCCTCATAGTGCGCTACATCTTTGAAAGGTTTGTAGCAGTGCCGTTTGCAACCGCCCTGAGTGTAACAGAGAAGAATAGACAGAAAGTCCAGTACAACCCTATTCTGGAACAttatttcacttcctgttccaaaACCCCAGGACAGGCAGATATTCAAGGCCTGTCAAAAAAATGTAGCATCTCCAGTAGACAGGTGGAGTGCTGGTTCAGGAAGAGACGCAACCAGGAGCGTCCAGGGGTCCTGAAAAAGTTCAGAGAGGCCAGCTGGAGATTTGTCTTTTACCTAGGAGCCTTTATTGGCGGCATTGTAGCCCTGTATGATAAACCCTGGTTTTACGATTTACGAGAAGTGTGGAATGCTTATCCAAAACAGTCCATGTTGGAGTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTTTACTGGTCTCTTCTGTTCAGCATCACGTTCgatgtgaaaagaaaaGACTTCAAGGAGCAGATAATTCACCACTTGGCCACATTGACGCTGCTGGCGTTTTCCTGGTGTGGAAACTATATTCGAGTGGGAACGTTGGTCATGCTTGTTCATGATGCCTCTGATGTGTTTCTGGAGTCTGCCAAGATTTTTAACTACGCCAAATGGGAGAAAACCTGCAATGGCATTTTTGTTCTGTTCGCTGCTGTGTTCATGGTGACAAGACTTGTTATCTTTCCATTTTGGATCATTCACTGCACATGGGTCTACCCACCTGACTACTACCCTGTTTTCTTCGGGTATTACTTCTTTAATGCTGTGCTTGTCATCCTATTGATGCTACACATATTCTGGGCCTACCTGATCCTCCGCATGGTGAAGAAATTTCTCTTTGGGAGTTTAACCAAAGATGAGAGGAGTGACAATGAAGAAGACGAAGACGATGAAGGGGAGAACAGCACACTCGAGGACCATGATGGACACCCAAAAGTCACCAATGGCTGTGGAGCCAACCATCACTAACCAACTGGACACTTCTGCAGTTTCTCCTGTTGCTGATGACTGAAGGAACctaatgaagttttttttccctcttttttttagtttttattttttggatgaAGACCTAGACTCCTATGGTGTTCAGCCTCAATTGGCTTCAGACTATGAGAGACACTTTTGATTTATTACAACCATGAAAGTGCCAGAGACTTGACCAGAAACACACTTCTATCTGTCGGCAATACAAACCCAAACAAGTGCTTGTTTCCTTTTCCTTAGTGCCAATAGAGACTGATTGCCTTGGCTCCTCCGTTGTGGCCACACTCTCTATATGAACCACAAACCAACCAAGAAGAAAAAGAtcccaaaatgaaaaattttcCATTGTGCTTAATCTGATCCTTATTGTTCATTGGAACACAATACTACAGAGTGACCTGGATGCTGCTGAGGCTCCTCTGCTGTTTCTCATCAGTGAGATGAAATCatactattgtttttttttaccttgctTGAAGacactatagaaaaaaaaatcctaatccCATGAATCCCATGATCTTGTATTGAAAAGTTGCATTTTAGAAAAAAGCGTTACACTGAGTGTAGTTCCCCAGCCAAGACAAGTTTGGTGTTCAAAGTTTGCTTGTTCAGCTTCGTGGAGGAGAAATAAGGCTAATATTGCTAACAAGTAAGTGAGAGAGTGCAGGAGAGAGCCAAGAACAAATGAATGCGAATGGAGAACAAGTAGAAGTAATTGTGATTTCTGTTGACTTGAACTATATACttgtagttgtttttttaacgtttatgttaaatatattcCAATACATGTGTGCTTTGACATTTGATAAAAATGGTCAGAAGAAAGATTTTATCATTGAAAGTTGACTATaaag
>XM_026930621.2
TGTGCCTGTGAGGAATTCTAAACGAAGTGCATTTCTGTGTGATCAGAGCTGCGCATTGCTGTCATGCTCAGTTTACTCAGCGCCTCggcctttcacacacacacgcactgaaGTGAAGACTGCAACATCTGCTCAGagtGGGCGGGATGATTGGGACCATCTGCGAATGGTTCTGGTGGGACCGCCTCTGGCTGCCCGTCAACCTGACATGGGCAGATCTAGAAGACAAGGACGGCCGGGTCTACGCCAAAGTGTCTGACTTATACATAACTTTGCCTTACTCACTAGGTTTCCTCATAGTGCGCTACATCTTTGAAAGGTTTGTAGCAGTGCCGTTTGCAACCGCCCTGAGTGTAACAGAGAAGAATAGACAGAAAGTCCAGTACAACCCTATTCTGGAACAttatttcacttcctgttccaaaACCCCAGGACAGGCAGATATTCAAGGCCTGTCAAAAAAATGTAGCATCTCCAGTAGACAGGTGGAGTGCTGGTTCAGGAAGAGACGCAACCAGGAGCGTCCAGGGGTCCTGAAAAAGTTCAGAGAGGCCAGCTGGAGATTTGTCTTTTACCTAGGAGCCTTTATTGGCGGCATTGTAGCCCTGTATGATAAACCCTGGTTTTACGATTTACGAGAAGTGTGGAATGCTTATCCAAAACAGTCCATGTTGGAGTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTTTACTGGTCTCTTCTGTTCAGCATCACGTTCgatgtgaaaagaaaaGACTTCAAGGAGCAGATAATTCACCACTTGGCCACATTGACGCTGCTGGCGTTTTCCTGGTGTGGAAACTATATTCGAGTGGGAACGTTGGTCATGCTTGTTCATGATGCCTCTGATGTGTTTCTGGAGTCTGCCAAGATTTTTAACTACGCCAAATGGGAGAAAACCTGCAATGGCATTTTTGTTCTGTTCGCTGCTGTGTTCATGGTGACAAGACTTGTTATCTTTCCATTTTGGATCATTCACTGCACATGGGTCTACCCACCTGACTACTACCCTGTTTTCTTCGGGTATTACTTCTTTAATGCTGTGCTTGTCATCCTATTGATGCTACACATATTCTGGGCCTACCTGATCCTCCGCATGGTGAAGAAATTTCTCTTTGGGAGTTTAACCAAAGATGAGAGGAGTGACAATGAAGAAGACGAAGACGATGAAGGGGAGAACAGCACACTCGAGGACCATGATGGACACCCAAAAGTCACCAATGGCTGTGGAGCCAACCATCACTAACCAACTGGACACTTCTGCAGTTTCTCCTGTTGCTGATGACTGAAGGAACctaatgaagttttttttccctcttttttttagtttttattttttggatgaAGACCTAGACTCCTATGGTGTTCAGCCTCAATTGGCTTCAGACTATGAGAGACACTTTTGATTTATTACAACCATGAAAGTGCCAGAGACTTGACCAGAAACACACTTCTATCTGTCGGCAATACAAACCCAAACAAGTGCTTGTTTCCTTTTCCTTAGTGCCAATAGAGACTGATTGCCTTGGCTCCTCCGTTGTGGCCACACTCTCTATATGAACCACAAACCAACCAAGAAGAAAAAGAtcccaaaatgaaaaattttcCATTGTGCTTAATCTGATCCTTATTGTTCATTGGAACACAATACTACAGAGTGACCTGGATGCTGCTGAGGCTCCTCTGCTGTTTCTCATCAGTGAGATGAAATCatactattgtttttttttaccttgctTGAAGacactatagaaaaaaaaatcctaatccCATGAATCCCATGATCTTGTATTGAAAAGTTGCATTTTAGAAAAAAGCGTTACACTGAGTGTAGTTCCCCAGCCAAGACAAGTTTGGTGTTCAAAGTTTGCTTGTTCAGCTTCGTGGAGGAGAAATAAGGCTAATATTGCTAACAAGTAAGTGAGAGAGTGCAGGAGAGAGCCAAGAACAAATGAATGCGAATGGAGAACAAGTAGAAGTAATTGTGATTTCTGTTGACTTGAACTATATACttgtagttgtttttttaacgtttatgttaaatatattcCAATACATGTGTGCTTTGACATTTGATAAAAATGGTCAGAAGAAAGATTTTATCATTGAAAGTTGACTATaaag
>XM_034308952.1
GCTGGGTGTGCCTGTGAGGAATTCTAAACGAAGTGCATTTCTGTGTGATCAGAGCTGCGCATTGCTGTCATGCTCAGTTTACTCAGCGCCTCggcctttcacacacacacgcactgaaGTGAAGACTGCAACATCTGCTCAGGCAGagtGGGCGGGATGATTGGGACCATCTGCGAATGGTTCTGGTGGGACCGCCTCTGGCTGCCCGTCAACCTGACATGGGCAGATCTAGAAGACAAGGACGGCCGGGTCTACGCCAAAGTGTCTGACTTATACATAACTTTGCCTTACTCACTAGGTTTCCTCATAGTGCGCTACATCTTTGAAAGGTTTGTAGCAGTGCCGTTTGCAACCGCCCTGAGTGTAACAGAGAAGAATAGACAGAAAGTCCAGTACAACCCTATTCTGGAACAttatttcacttcctgttccaaaACCCCAGGACAGGCAGATATTCAAGGCCTGTCAAAAAAATGTAGCATCTCCAGTAGACAGGTGGAGTGCTGGTTCAGGAAGAGACGCAACCAGGAGCGTCCAGGGGTCCTGAAAAAGTTCAGAGAGGCCAGCTGGAGATTTGTCTTTTACCTAGGAGCCTTTATTGGCGGCATTGTAGCCCTGTATGATAAACCCTGGTTTTACGATTTACGAGAAGTGTGGAATGCTTATCCAAAACAGTCCATGTTGGAGTCTCAGTACTGGTACTACATCCTGGAGATGAGCTTTTACTGGTCTCTTCTGTTCAGCATCACGTTCgatgtgaaaagaaaaGACTTCAAGGAGCAGATAATTCACCACTTGGCCACATTGACGCTGCTGGCGTTTTCCTGGTGTGGAAACTATATTCGAGTGGGAACGTTGGTCATGCTTGTTCATGATGCCTCTGATGTGTTTCTGGAGTTAACCAAAGATGAGAGGAGTGACAATGAAGAAGACGAAGACGATGAAGGGGAGAACAGCACACTCGAGGACCATGATGGACACCCAAAAGTCACCAATGGCTGTGGAGCCAACCATCACTAACCAACTGGACACTTCTGCAGTTTCTCCTGTTGCTGATGACTGAAGGAACctaatgaagttttttttccctcttttttttagtttttattttttggatgaAGACCTAGACTCCTATGGTGTTCAGCCTCAATTGGCTTCAGACTATGAGAGACACTTTTGATTTATTACAACCATGAAAGTGCCAGAGACTTGACCAGAAACACACTTCTATCTGTCGGCAATACAAACCCAAACAAGTGCTTGTTTCCTTTTCCTTAGTGCCAATAGAGACTGATTGCCTTGGCTCCTCCGTTGTGGCCACACTCTCTATATGAACCACAAACCAACCAAGAAGAAAAAGAtcccaaaatgaaaaattttcCATTGTGCTTAATCTGATCCTTATTGTTCATTGGAACACAATACTACAGAGTGACCTGGATGCTGCTGAGGCTCCTCTGCTGTTTCTCATCAGTGAGATGAAATCatactattgtttttttttaccttgctTGAAGacactatagaaaaaaaaatcctaatccCATGAATCCCATGATCTTGTATTGAAAAGTTGCATTTTAGAAAAAAGCGTTACACTGAGTGTAGTTCCCCAGCCAAGACAAGTTTGGTGTTCAAAGTTTGCTTGTTCAGCTTCGTGGAGGAGAAATAAGGCTAATATTGCTAACAAGTAAGTGAGAGAGTGCAGGAGAGAGCCAAGAACAAATGAATGCGAATGGAGAACAAGTAGAAGTAATTGTGATTTCTGTTGACTTGAACTATATACttgtagttgtttttttaacgtttatgttaaatatattcCAATACATGTGTGCTTTGACATTTGATAAAAATGGTCAGAAGAAAGATTTTATCATTGAAAGTTGACTATaaagta

Function

symbol description
cers3 Enables sphingosine N-acyltransferase activity. Involved in ceramide biosynthetic process and keratinocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Implicated in autosomal recessive congenital ichthyosis 9.

NR:

description
ceramide synthase 3

GO: NA

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930620.2 True 2155 mRNA 0.43 11 9007373 9035452
XM_026930621.2 False 2149 mRNA 0.43 11 9007375 9035452
XM_034308952.1 False 1900 mRNA 0.43 9 9007369 9035454

Neighbor

gene id symbol gene type direction distance location
lins1 lins1 coding upstream 5518 8995376 ~ 9001851 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 224527 8727720 ~ 8782842 (+)
selenos selenos coding upstream 283287 8718527 ~ 8724082 (+)
snrpa1 snrpa1 coding upstream 289540 8711155 ~ 8717829 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding upstream 305804 8631823 ~ 8701565 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding downstream 3756 9039210 ~ 9189919 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 190993 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 301193 9336647 ~ 9349909 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 314742 9350196 ~ 9378551 (+)
arnt2 arnt2 coding downstream 383071 9418525 ~ 9529240 (+)
G178383 NA non-coding upstream 23127 8982965 ~ 8984242 (+)
G178260 NA non-coding upstream 198425 8807605 ~ 8808944 (+)
G178192 NA non-coding upstream 417814 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 462894 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 485247 8514131 ~ 8522122 (+)
G178539 NA non-coding downstream 170003 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 242151 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 242433 9277887 ~ 9278116 (+)
G178761 NA non-coding downstream 263932 9299386 ~ 9299657 (+)
G178760 NA non-coding downstream 265540 9300994 ~ 9301338 (+)
LOC113536578 NA other upstream 736619 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 759281 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 762345 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 763721 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1736049 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1775216 10810670 ~ 10850923 (+)
G179632 NA other downstream 2060699 11096153 ~ 11098811 (+)
G179643 NA other downstream 2124892 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2393159 11428613 ~ 11430897 (+)
G180121 NA other downstream 3019504 12054958 ~ 12055749 (+)

Expression


Co-expression Network