LOC113536618 (LOC108271381)


Basic Information

Item Value
gene id LOC113536618
gene name LOC108271381
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11478608 ~ 11481509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930677.2
TGGCTCCTCCTACAGCTGGAGCTGGCGTGGTTTGTGTGATTCCTGTTTCCGGCTCGGCTTCCACAGCGCGGCTCGACAGGAATTTTAAAAGCTCGCCTGCAGCTCGTATACTCACAGCGTCACCACACCGGGTCACCTCAAAGTCATTTACAATTTAAGCAAAAAAGGGTACtctttcatcaaaaaaaaaatcaatagccTAAATAAAGACTAAACATGGCCTCGGATTGTCACTTCACCGACTCCATATccaaggaggaagaggaggacgaGGAATTTGATCGGATGTTGAAGCGGATCGGTGGAAAGGGGAATATTTATTTAGTAGGAGACGCGGATGGAGAAAACAACTGCAGCCTTTTCCAGGAGTTTATCATGGACGTGTTCCACACTGAGGTGCACATCAAGAGGGACAGAAACGCAAACCTCGGCAACGGAATCAAATGTGCCGCTGCGagaaactgtccagtttctgatGGGGCTCAAGGAAAAGGCGATAATAACGCCGACGTGGACGAGAAACGCGTCCGACACCAGCGCAAAACCTCCGGACACGACGGACGAGCGATTCACTGCGCCGTCATCGTCTTCATTTTCAGACACGGATACATTCAGAACAAGGCGAACCGCATGTGTATGGAGGAGATCCTGAAGGACGTAAAGGTTAGAGTGAAGAAAAATCATGGAGTTCGTCAGGCATTACTGGGCCTCGTTCATGCTGATGCTGAAAGCTCAGAGACTCACCAGTCTGTGACGCTCTTGGAGGAGACATTGAGATCTGTGTTCGTAAAACATCCACACGACTCCATATGGACCGGCCATTTTATTCCTAACGCAGCAGACGGCATAGAGAACATCAAGAGGAATGCCTGCAAAGCTGTGAATGTGTCTCAGAGCCCAGATAACATCTTGAGCCGTAAGCGAAATATTTTCTGGCTTTGTTCTGGCCGCTGGATCAGGAGAGGACGTAGACAACGAGCCGAAGCGATGACACATGCTCAGGCACAGAATGGTGATCCCGAAAGCACAGAGGAAGGAATTCCATTACAGATGAAATCCGGCTCACAGTCCTGACATCAGGTTTACTAACAGACTGAAAATGACCACATGACCTGTGAAATGcacagaaagctgaaatttaCCTGCTGTATTTGATTTATTACCTGGCAGGAATGTTGAAGGAGCATTGGGAAATGAAGTTTACTCATGGGTGCTGCTGCTACTCTGTAGTCTTTCAAAATAAAGTTCCAGGACTTTCAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930677.2 True 1263 mRNA 0.48 4 11478608 11481509

Neighbor

gene id symbol gene type direction distance location
psmd1 psmd1 coding downstream 2640 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 240799 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 365019 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 370043 11096127 ~ 11108565 (-)
hykk.2 hykk coding downstream 834414 10639021 ~ 10644194 (-)
LOC117598431 NA coding upstream 38610 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 261439 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 476769 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 492172 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 581486 12062995 ~ 12065799 (-)
G179727 NA non-coding downstream 282935 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 899148 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 902576 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 915156 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 963407 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 77410 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 246768 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 514661 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 571772 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 591760 12073269 ~ 12074531 (-)
G179803 ncl other downstream 58562 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 232298 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 783489 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 955029 10486735 ~ 10523579 (-)
G179035 NA other downstream 1663383 9813892 ~ 9815225 (-)
LOC117598430 NA other upstream 10198 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 29337 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 46448 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 381480 11862989 ~ 11889149 (-)
ncln ncln other upstream 538903 12020412 ~ 12032006 (-)

Expression


Co-expression Network