tk1 (tk1,LOC107713239,LOC107726782)


Basic Information

Item Value
gene id tk1
gene name tk1,LOC107713239,LOC107726782
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7150679 ~ 7154709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930690.2
TCTGGAGGCGGGGTTTAACGTGGCCCCGCCCTCTTGTACATCACGGTCAGAAACTGGCGGGTGATTTCGAATCAGTTGTTCACGGAAACCGGGCTGTGCGGGGTTTATCCTGTGTCTTTCacgcaaaagaaaaaaaaaattgacaatgGACTGTTTAAACGTACCGAGGATTATGCCAAATTCTCCAAGAAAAACACGGGGACAGATTCAGGTTATTTTTGGACCAATGTTCTCAGGGAAAAGTACCGAGCTGATGAGGAGAGTGCGGCGCTTTCAGATTGCCCAATACAACTGCTTACTGATCAAATATGCCAAAGACATGCGTTACTCCGACACGGGCATGGCCACACATGACAAAAATACAATGGAGGCCGTGCCAGCTAACTGCCTGCGAGATGTCTGGTCTCGTGCACTAGAGGCCTGCGTCATCGGCATTGATGAAGGCCAATTTTTCCCagacactgttgaattctgtgAGGCCATGGCAAACATGGGGAAGACGATTATTGTCGCAGCACTCGATGGCACGTTTCAGAGGAAGcCCTTTGGCAGCATACTGAACCTGGTCCCTTTGGCTGAGAGTGTGGTGAAGCTGAATGCAGTCTGTATGCAGTGCTTTAAAGAGGCGTCCTATACTAAGAGACTTGGAGCAGAGCAAGAGGTGGAGGTGATTGGAGGAGCTGATAAATACCAAGCAGTGTGCAGGGTGTGTTATGGAGGCCTGGTGGCGAATAAAGAGAACTGTGCTCCCCAGAGGGATGAGACACCCCCTCACATTCTGAAGGGGAAGCAGGTGGACTACTGTGCGTCACGCAAGCTTTTCGCTTCCCTTCATTTATGAACACGTGCTGTACACTAGAGTATTAACTAATTTAAACAGTGAACCAGTTGCTGCAACAGCCACAATACCTTGTAAATTGAGCACTCACTGCAAAATTCTAAGATATAGCAGTGTGTGAGATATAGTGCTGAGTGCTATAGAggaattatatattaattttaaaatgtttgtctgtctgtcacacTTTAtattctgtaactgtgtgttttaataaaatgtcaatTTGGATTTGACACTAAA

Function

symbol description
tk1 Predicted to enable thymidine kinase activity. Predicted to be involved in thymidine metabolic process. Predicted to act upstream of or within DNA biosynthetic process and phosphorylation. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pectoral fin musculature; and proliferative region. Orthologous to human TK1 (thymidine kinase 1).

NR:

description
Thymidine kinase, cytosolic

GO:

id name namespace
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0006260 DNA replication biological_process
GO:0004797 thymidine kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930690.2 True 1081 mRNA 0.46 7 7150679 7154709

Neighbor

gene id symbol gene type direction distance location
tmc6b tmc6 coding downstream 42470 7079500 ~ 7108209 (-)
aspscr1 aspscr1 coding downstream 94755 7018805 ~ 7055924 (-)
LOC113536680 LOC108270653 coding downstream 139164 7009298 ~ 7011515 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding downstream 155111 6988303 ~ 6995568 (-)
mafgb mafg,mafgb coding downstream 171203 6961636 ~ 6979476 (-)
ogal LOC108270888,LOC108412751 coding upstream 25499 7180208 ~ 7190834 (-)
si:dkey-93h22.8 LOC108270890 coding upstream 37546 7192255 ~ 7202864 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding upstream 93639 7248348 ~ 7252593 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding upstream 141998 7296707 ~ 7354330 (-)
irf2bp2b irf2bp2 coding upstream 279610 7434319 ~ 7437490 (-)
G177404 NA non-coding downstream 11775 7137629 ~ 7138904 (-)
G177374 notum non-coding downstream 91129 7058532 ~ 7059550 (-)
G177097 NA non-coding downstream 412071 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 561383 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 599097 6551325 ~ 6551582 (-)
LOC117598441 NA non-coding upstream 1519 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 112852 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 135176 7289885 ~ 7290092 (-)
G177459 NA non-coding upstream 138208 7292917 ~ 7293170 (-)
G177469 NA non-coding upstream 220318 7375027 ~ 7375235 (-)
LOC113536608 LOC108270551 other downstream 289331 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1442375 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1953861 5139610 ~ 5196818 (-)
G176307 NA other downstream 2069784 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2646350 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 325713 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 425725 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 521207 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1089940 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1091994 8246703 ~ 8246775 (-)

Expression


Co-expression Network