si:ch73-100l22.3 (LOC108271015)


Basic Information

Item Value
gene id si:ch73-100l22.3
gene name LOC108271015
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6940768 ~ 6954744 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930692.2
CACGAACGAGCGCGCGGCAAAACCCGTAACGGAATCCCTCGGGAATTGAATTAATGTACTTTAGTAAAGCTGGTTAAAGAACAATAAGCTTATAAATACAGGGTTTGTGTCACTGTTTGTTATAAACGCGCTTTTTAGACGGACACTAATTCGCGACTTTCTAAGTGACCTCAGACTTTCTCTGTGTTTATGTGCGCCTCGGCTCAGACCCGTGTTTGTTGCTAGTTAAACCAAAACACGCaggattacagcagcagctgatttttttttttttgcgcacTTGTATTCCGACAAAGCCTCTCCTCTCGCGCTAAGATTGACTAGCGTTTCATACTCTCGCGCAGCTTGCTGATTGGACAGTTCTCTATCCCGCGCAGGAGGCGGGAGTCTAATAGCCAATCCTGGATCAGGAGGCGGGGCTTGTCAGAATGCAGATAGGAAACGGACTTTTCACTAGGAAACGGTTAAAACGTAAACAGTGGGTCAGGTCGCTAACGGCAGCTAAGCTAAAGCAAACGCTTATTTTGTTTACATGTGTATTTTTAAGTTAAAAGTTTGAGAAACGTAACTCTTTTAACCCATTACCATAGAAGACTTGAACTAGGTTAGTTTGAGCTACAGTTTGGTGTTAGCATCTTGTATCTAATTGTTGGGATAAATTAGCTTGCCGTTAGCTACTCGCTTATAGCGGGCTGTGGATAACTCTATATAAAAGTGAGATTTTGATCCGATTCTATTCCTTAAACCCGTGATCATTTTAAACTTTAGGTAATTTTATGGTCTTGTTCAATTTATAGAGCCAATTaaacgctagctagctaaataaaagATGTGCCAGTGACCATTACTGCTAACAGCTCGTCGCTTTTTTTCTTATGATGCTGAATAACGTTAGTTCTGAGGCGTTTGTTTAACAAGCTTTGaggtaaattattattttcaagtaAGCAGTATATTAAGGCACTCTACAATGGAGAGCTATGAGGAGTTTATCCAAAGACAAGCCATCCACATACGGAGTAATGTCAGTGAAGAGTCTGAAGCAGAAATCAGCCAGTCATCGATGATTAGATTTCACGGCTTGCCCATTCTGCCTCCTCTGctgAACAAAGATCAGAAGGAAGAAATGCAAAGCCTGAGAGAAGCAGCCTCTAATCTTACAAATAAGAGGAAAACATCGTCACTGTCTCGGGTGTCTTATGTACAGGCCATACTAGAGAGTGTTCAGCTGCGAAAAGTTCCAACCATTGACGAGTTTAAGGATGAGACAGGACCAGAAAATCCATTAAACACTAAATGCCAAAGTATCACTTGCATCCCTGGAGATAAAAATGAGTATAATACAGCTACTGAAAGCCATTGGAATTCATCCTCCTTAACTCTCACTCAACAAATGCCTAGTGAGAAAATGGCAGTAATGGAAAGTCACCCTCTGACATCTACAGCTTGCGATGGTCGTACAGCTTTCAGCCTTAGACCTTTTGAAGGAGAAGATTCTTTAGAGAGCAGCCACACAACTGTTCTGTTTGGAGGTCTTCCTGTGTTTGGTCACAGGCTGGAACAAGCTGTTGAGATGAACACAGGTTATGGATTTGATTCTTCCTCACTATCTTATTCAGAGAAACATTCTCATATAAATGCTAGCCACCAAGGGCTGTCATCTGGATATGTCACGAATGAAACCTCTGACATCACCCCTAGCTGGGTTAACAGAACCCAGAACATCAGAAAAGATCCAGAGGGCAGACATTCGTATGGCGGAGAAGTTATATTAAATTCCTCAAACCTGTCTAATAGGACTGGTGACATCATCAGCCATACTCCAGTAGATGGAGAGGTCCTAGAGGAGGAGTATGTAGTCTTGAACAATGCACAGATCGATGAGGTTACAGAGCCAGTAAATTTAGCAGTAGAGCCAGAGCTGGCCGAAGGACCTTACCGCATGAGTCTGCAGAATCTTTTGAAGAAATCTCAAGAGCACCGGCGGCGTCAGCGCCTCCTGCGTAACCAGACAAAGGCTTTGAAAGCCAGTGAAGCCGGACGTGCCAATGAACATAGTCTCTCTGATAAGGAAAATGAGGGATGGCTGCCAGGGGACACTGGGAAAACTGAGGTCAAGGGAACCAGTGAGAACCAGGGGGAGGATCATTTAGCAGATCAAgatccacagacacacaaacaaggtggagagagagagagtgtagagCCTTGTGAAGTTGTCTGCCAAGACAGAGATTGCCTTAATCTCACTTCAGCCTCAAACAGCACGGGGTGTACAAATGGAAAATCATCAGCTTTCTCAAACCGTCCAAATATAGCTGTCAGTTCCACTCAATCCACTTCAGCAAAATCTCTATATCAGTCCAAGGGCAAGAAAATGGGCAGCATGCTGCCAAGACCTTGtctaacaggaaataaaaaatttaagaatGTCCCAACTCCCAAGTTTTGCTTAAGCCCAGTGCGCAGTAAAAAAGGCAGTGCTGTGTCTGCCTCAGTCAGAAAGCCCCTGGTCAAGACGCCTGTCTGTGTAGAAGAAAAAACAAGGCCAAATCCATGTGGGCAGAGCAAAAGCAGAGCTGTGAGTCTCCTGCCAGGGACTGAGGGAGGCGTGCCTTTGTGCAAGAGCATGGATCAGGCCAAACAGATCGCTCAGCTGGAGCTTAACCTGTCAAGCCTTAAAGTTCTAATCTCCGATCTGGAGTCTACACTCGCAGAGTCACAGGCACACAATCCCACAGAGGCAGCCAACAACCCCCAGCAAACCCTGCTTTCAAAGCATGAAAGCGCCTATCTGCCTGCTAGTGACGGAAAGTCTCCGTGTGTGGTTACTTTTAGTGAGACTGTGCAGCAGAAAGTCCTAGCTAAGGATTATGGGATACAGCCAGGGAATAAACAGCATGAGCCGCCACAACGTGTCACCTCTCTGGTGCAGAAAATGAGGGTGCCGGAGGCGTTCTGCACTATCAATGGTTCAAAGCAGCTCTCTGAGAGGACTGCTGTCCTTACAAATGCCAACAATCAGCTTGAAGAGAGGAAGAATGCCTCTGGcgacaaaaagaaaacatctgaaaacaTGGAAGACTCCCTAAATGGCGCATCTCTTAATCGGTCATATGATGTGGACACGCCCTCAGGACTGTGGGCCCAGTCCGGGCTCAGAGGGAAGCAGCTGACCCCAGAGCTGGGTGGGCAAGAGGGGGTGTCACGTGCCAAACGCAGGCTGCAAATGAACATTGTGGACGGAAACACGTTGGGCCAACCGAGCGATGAGGAGCGACCTCAGTCCAGTACACCTAAAGCGATGCAGAGACCTATGCAGGAGCTACAGCTAAGGGATGAGCATGGCACTCAGGTCAAAGCTCTGATGGAGGAGCAGCGCAGACAACAGCACGAGCTGCTGCAGtctCTGGCGATGAAGTACCAGTTTCTCCGGAGCGTGTCCTTCCCATGTCCCAGCTCAGGATCACGTCTGGAGGACATGACAACctcctgtctctcctcctcccctGTTTCTGTGGGGCTGGGCTCTTCTTCCCATCAACATGAACTCACGCTGTCTGAACTGAGTGCTCTGTCAGACTCGTTGCATATTTCACAGTCCTGTCTTCCTCTATGTTATCGCCCCCTGGTGGCAGCAGCTGTGAAAGGCTACCTGACACGCAGGCTTCTTCGTACAGAGAGAGTAACTCAGCTCATCAGAACCATAAAGGACACTCAGCTGTTCCTCCAGGGCTTTCAGCCTCCCACGCCAGGCAGAGAGTACGGCAACAAACAGGACAGAGTCCTACAAGAGAGAGTCTCACTACAGTTGCGCTCAGCGCGTTATGAGCTGCATGACCTCTTCTTCAGTGTGTGTCCTGCAGAGCGCATGCAGGTGATCAGCTGGGACCGACAGctgaccagagagagagagctcaggCGTAAGGAGAGTACTGAGCTGCAGGGCAGAAGGAAAGGTTCTCTGTCTGCTGCCACCAGGAAAGCCCTGGAGAGGAAGAGGACAATGATGTTACAGAAGAAAGCAGCAGAAAGGACAAAGCCGGCAGTGGGTGCCGAGGAAAGATGGACGTTTGTGCCAAACCCACGCAGAGTTCCAAAGAAGACTACTCCGTTACGGCGCAGGTGAAGAGCTTACACTTCTGCTGCACATACAGACGCCAACACAGCATGGGGCCTTGCTAGAATATCACCATGTCATGTTTAATGACACaatgcctttatttatttttttaaagttaggTGTCAAAATTTGGAAAGTTTCCTATTTATTCATCTTGCCAAGTTTATTGTGAAATGTGGGAAAATACACTTGCAAATTGACAGGCTgttgttagttaatgtattttttttttactgtcagcTATATGTTGACTTGCTTCGTAACTTATTTTGTGTTCACTTTCTA

Function

GO: NA

KEGG:

id description
K16453 CCP110, CEP110; centrosomal protein CEP110

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930692.2 True 4408 mRNA 0.47 10 6940768 6954744

Neighbor

gene id symbol gene type direction distance location
mfn1b mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155 coding downstream 27450 6900248 ~ 6913318 (-)
shroom2b LOC108271435,LOC105905657 coding downstream 54355 6861351 ~ 6886413 (-)
clcn4 clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374 coding downstream 95523 6831248 ~ 6845245 (-)
LOC113536768 LOC108270562 coding downstream 124055 6809823 ~ 6816713 (-)
swap70a LOC108271193 coding downstream 133738 6794539 ~ 6807030 (-)
mafgb mafg,mafgb coding upstream 6892 6961636 ~ 6979476 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding upstream 33559 6988303 ~ 6995568 (-)
LOC113536680 LOC108270653 coding upstream 54554 7009298 ~ 7011515 (-)
aspscr1 aspscr1 coding upstream 64061 7018805 ~ 7055924 (-)
tmc6b tmc6 coding upstream 124756 7079500 ~ 7108209 (-)
G177097 NA non-coding downstream 202160 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 351472 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 389186 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 389506 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 395698 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 103788 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 182885 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 201484 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 312817 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 335141 7289885 ~ 7290092 (-)
LOC113536608 LOC108270551 other downstream 79420 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1232464 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1743950 5139610 ~ 5196818 (-)
G176307 NA other downstream 1859873 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2436439 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 525678 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 625690 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 721172 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1289905 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1291959 8246703 ~ 8246775 (-)

Expression


Co-expression Network