zfand6 (zfand6)


Basic Information

Item Value
gene id zfand6
gene name zfand6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9336647 ~ 9349909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930698.2
AAGGGGAAGGAGTGACGTCACGCTGGGGGATGGAGAGTGACGAAAATAACAAACAGGCTGTTTCTGGGTGTGGGGGCTGATAGCTGAAGGACGAGCTTCGACTCTTACTACGTTTATTTAACTTGTGTCCTGTTATTTTCTGGCGTCAAGTTATTATTTCGTGCCTGTTGACGCTGGAAAAGAAAGTTGTCCTGTAATTTCGAGCAACAGAGCTGTGAAGTCAGGGGACGGAGAGACATGGCTCAGGAGACGAATCAGACCCAGGTGCCCCTGCTGTGCTCCACTGGCTGTGGTTTCTATGGAAACCCACGTACCAATGGCATGTGCTCCATCTGCTACAAAGACTTCCTGCAGAGGCAAAACACCAACGGCAGGGTCACTGAGACAGTGTCGGTGCCTGCCGTGTCATCCAGCCTGAGCAGTTTAGACGAAGCATCATCCTCCACAGTTACTCCTGCAGGAGTCACACAAGAGGAGGAAGCTTCAGGAGCTTCAGTCCAAGCAGAGCTGAAAACACAAGACATAACAGCCTCAGGATCAGATGCATCCTCACAGCCAGCCACCCCCGAACCGGAAAAATCCAAACCCAAAAAGAACCGCTGCTTCACCTGCCGCAAGAAAGTGGGCCTGACGGGTTTTGACTGCCGCTGTGGAAACGTGTTCTGTGGTGTTCACCGATACTCTGACGTCCATAATTGCACCTTCAACTATAAAGCCGATGCTGCTGAGAAAATCAGGAAAGAAAACCCGGTCATCGTCGgtgaaaaaattacaaaaatctGAGACAGGGCTCATGGACAACCCCTAGTCCTTTTCCCCTCCCaccattttcccccattttcccCTCCATCCCACATTGCACAGTGGACCTCTGAACAATACCAGCACAGACCCTCGAatcatacacaccacacaggagtacttttttttttttctttttcaagcaaatatatgtttttctttggaATTTATGTCtattgttttgtgtgaaaatgttacagaaatctagatttatacaattatattttaatttcaatgaCTAACAGGGCTATGGTGAGACTACTTGAGGGGCGGGTCTTTTCTCAAGTCTATAAACAAAGATTGCATGTTAAACAAGCAAGGATATTTTTCTTTAGATAAAGAATATAAACATGAGTGATTTAGTTTCACATTAACGGCTTAAAGCATGCGAGAAACGTTTTATCAGCTGGCTTTGCCCTCTAAattttgttaaatgattaaGAGTTTATAATCACTAGTATAGAAAGTGGCGTGAGTGTGTAAGCATGTGTACATGTATACTGAGTTGCCTTTGCAGATATACAGTTAGAGACTGTAGCACAATTTGGCAGTTCCTTGATGGCAAAGGAGCACCTCAGGACCACAAATGATCAGATACTATTTTGGCTggtggatcattctcagcacaaTACTGACACTGGCACGGTAGCACGATCAAGTCATACGGTGTGACTGTATCAGATCAGCTCCATTGTTGGGGATTTGAACGCTGTTTACACTGACCTTGTCAGTCCATCTTACAGAGAGACTGAAGCTAATCTTTTTGTGCGTTGCCAGTTTTATCCCCTTCATCAGTGTCGGTTTATGACCACACTTCCACTGTTGGTTGGTTGTCTATTCTCAATCCAGCAGGAATATTGAACGATGctgctgcacctgatacacTCACATCACAACGCACATATATGAACACACAGATCTGATCAGTAGTGGTCCTGTGGCGGTCCGTTTTCTCTGATGGACGAGGTAGAGGAGGGCTGTATGCACAAACTGCGGAGTAACAGGTACAGTCTGAGCTGTCTGGTAGATAAAATAGCAACtcattgtgtgtgagtgtgattttGGTATTATGCAGCTGGAGATGTTAATTAATCTGTATTTACTTTATTAGTGACTGATTGTTTTCCCTTAAAGACTATaactaattcatttattattcaaaattattgtaatgtgaccacagatgatgatgatgataatgatggtgatgcctgttattttattttcactttcttcAGCTTTGATCTGAATAAAGCAAAACATTCTTGGCTCA
>XM_034308655.1
TTcgcaaatgtaaaaaatatatatatattatggtCGCTTATCGCATAACCAGTAACCAGAATGTCTGGATGAGATTTTGGAATCTAAATGTTTAgGAGAGACATGGCTCAGGAGACGAATCAGACCCAGGTGCCCCTGCTGTGCTCCACTGGCTGTGGTTTCTATGGAAACCCACGTACCAATGGCATGTGCTCCATCTGCTACAAAGACTTCCTGCAGAGGCAAAACACCAACGGCAGGGTCACTGAGACAGTGTCGGTGCCTGCCGTGTCATCCAGCCTGAGCAGTTTAGACGAAGCATCATCCTCCACAGTTACTCCTGCAGGAGTCACACAAGAGGAGGAAGCTTCAGGAGCTTCAGTCCAAGCAGAGCTGAAAACACAAGACATAACAGCCTCAGGATCAGATGCATCCTCACAGCCAGCCACCCCCGAACCGGAAAAATCCAAACCCAAAAAGAACCGCTGCTTCACCTGCCGCAAGAAAGTGGGCCTGACGGGTTTTGACTGCCGCTGTGGAAACGTGTTCTGTGGTGTTCACCGATACTCTGACGTCCATAATTGCACCTTCAACTATAAAGCCGATGCTGCTGAGAAAATCAGGAAAGAAAACCCGGTCATCGTCGgtgaaaaaattacaaaaatctGAGACAGGGCTCATGGACAACCCCTAGTCCTTTTCCCCTCCCaccattttcccccattttcccCTCCATCCCACATTGCACAGTGGACCTCTGAACAATACCAGCACAGACCCTCGAatcatacacaccacacaggagtacttttttttttttctttttcaagcaaatatatgtttttctttggaATTTATGTCtattgttttgtgtgaaaatgttacagaaatctagatttatacaattatattttaatttcaatgaCTAACAGGGCTATGGTGAGACTACTTGAGGGGCGGGTCTTTTCTCAAGTCTATAAACAAAGATTGCATGTTAAACAAGCAAGGATATTTTTCTTTAGATAAAGAATATAAACATGAGTGATTTAGTTTCACATTAACGGCTTAAAGCATGCGAGAAACGTTTTATCAGCTGGCTTTGCCCTCTAAattttgttaaatgattaaGAGTTTATAATCACTAGTATAGAAAGTGGCGTGAGTGTGTAAGCATGTGTACATGTATACTGAGTTGCCTTTGCAGATATACAGTTAGAGACTGTAGCACAATTTGGCAGTTCCTTGATGGCAAAGGAGCACCTCAGGACCACAAATGATCAGATACTATTTTGGCTggtggatcattctcagcacaaTACTGACACTGGCACGGTAGCACGATCAAGTCATACGGTGTGACTGTATCAGATCAGCTCCATTGTTGGGGATTTGAACGCTGTTTACACTGACCTTGTCAGTCCATCTTACAGAGAGACTGAAGCTAATCTTTTTGTGCGTTGCCAGTTTTATCCCCTTCATCAGTGTCGGTTTATGACCACACTTCCACTGTTGGTTGGTTGTCTATTCTCAATCCAGCAGGAATATTGAACGATGctgctgcacctgatacacTCACATCACAACGCACATATATGAACACACAGATCTGATCAGTAGTGGTCCTGTGGCGGTCCGTTTTCTCTGATGGACGAGGTAGAGGAGGGCTGTATGCACAAACTGCGGAGTAACAGGTACAGTCTGAGCTGTCTGGTAGATAAAATAGCAACtcattgtgtgtgagtgtgattttGGTATTATGCAGCTGGAGATGTTAATTAATCTGTATTTACTTTATTAGTGACTGATTGTTTTCCCTTAAAGACTATaactaattcatttattattcaaaattattgtaatgtgaccacagatgatgatgatgataatgatggtgatgcctgttattttattttcactttcttcAGCTTTGATCTGAATAAAGCAAAACATTCTTGGCTCA
>XM_034308656.1
ACATTTACCGGCGGGCGCAGCCGAACGAAAGCACTTCCGGTGTTTAGGCACCAATCAGATAGAACATATTTAAAGCCAGTCAAAGGAGAGACATGGCTCAGGAGACGAATCAGACCCAGGTGCCCCTGCTGTGCTCCACTGGCTGTGGTTTCTATGGAAACCCACGTACCAATGGCATGTGCTCCATCTGCTACAAAGACTTCCTGCAGAGGCAAAACACCAACGGCAGGGTCACTGAGACAGTGTCGGTGCCTGCCGTGTCATCCAGCCTGAGCAGTTTAGACGAAGCATCATCCTCCACAGTTACTCCTGCAGGAGTCACACAAGAGGAGGAAGCTTCAGGAGCTTCAGTCCAAGCAGAGCTGAAAACACAAGACATAACAGCCTCAGGATCAGATGCATCCTCACAGCCAGCCACCCCCGAACCGGAAAAATCCAAACCCAAAAAGAACCGCTGCTTCACCTGCCGCAAGAAAGTGGGCCTGACGGGTTTTGACTGCCGCTGTGGAAACGTGTTCTGTGGTGTTCACCGATACTCTGACGTCCATAATTGCACCTTCAACTATAAAGCCGATGCTGCTGAGAAAATCAGGAAAGAAAACCCGGTCATCGTCGgtgaaaaaattacaaaaatctGAGACAGGGCTCATGGACAACCCCTAGTCCTTTTCCCCTCCCaccattttcccccattttcccCTCCATCCCACATTGCACAGTGGACCTCTGAACAATACCAGCACAGACCCTCGAatcatacacaccacacaggagtacttttttttttttctttttcaagcaaatatatgtttttctttggaATTTATGTCtattgttttgtgtgaaaatgttacagaaatctagatttatacaattatattttaatttcaatgaCTAACAGGGCTATGGTGAGACTACTTGAGGGGCGGGTCTTTTCTCAAGTCTATAAACAAAGATTGCATGTTAAACAAGCAAGGATATTTTTCTTTAGATAAAGAATATAAACATGAGTGATTTAGTTTCACATTAACGGCTTAAAGCATGCGAGAAACGTTTTATCAGCTGGCTTTGCCCTCTAAattttgttaaatgattaaGAGTTTATAATCACTAGTATAGAAAGTGGCGTGAGTGTGTAAGCATGTGTACATGTATACTGAGTTGCCTTTGCAGATATACAGTTAGAGACTGTAGCACAATTTGGCAGTTCCTTGATGGCAAAGGAGCACCTCAGGACCACAAATGATCAGATACTATTTTGGCTggtggatcattctcagcacaaTACTGACACTGGCACGGTAGCACGATCAAGTCATACGGTGTGACTGTATCAGATCAGCTCCATTGTTGGGGATTTGAACGCTGTTTACACTGACCTTGTCAGTCCATCTTACAGAGAGACTGAAGCTAATCTTTTTGTGCGTTGCCAGTTTTATCCCCTTCATCAGTGTCGGTTTATGACCACACTTCCACTGTTGGTTGGTTGTCTATTCTCAATCCAGCAGGAATATTGAACGATGctgctgcacctgatacacTCACATCACAACGCACATATATGAACACACAGATCTGATCAGTAGTGGTCCTGTGGCGGTCCGTTTTCTCTGATGGACGAGGTAGAGGAGGGCTGTATGCACAAACTGCGGAGTAACAGGTACAGTCTGAGCTGTCTGGTAGATAAAATAGCAACtcattgtgtgtgagtgtgattttGGTATTATGCAGCTGGAGATGTTAATTAATCTGTATTTACTTTATTAGTGACTGATTGTTTTCCCTTAAAGACTATaactaattcatttattattcaaaattattgtaatgtgaccacagatgatgatgatgataatgatggtgatgcctgttattttattttcactttcttcAGCTTTGATCTGAATAAAGCAAAACATTCTTGGCTCA

Function

symbol description
zfand6 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in protein targeting to peroxisome. Orthologous to human ZFAND6 (zinc finger AN1-type containing 6).

NR:

description
PREDICTED: AN1-type zinc finger protein 6-like

GO: NA

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930698.2 True 2074 mRNA 0.43 5 9337540 9349909
XM_034308655.1 False 1939 mRNA 0.42 5 9336760 9349909
XM_034308656.1 False 1929 mRNA 0.43 5 9336647 9349909

Neighbor

gene id symbol gene type direction distance location
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding upstream 78650 9226447 ~ 9257997 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding upstream 146728 9039210 ~ 9189919 (+)
cers3a cers3,LOC107692405 coding upstream 301193 9007369 ~ 9035454 (+)
lins1 lins1 coding upstream 334796 8995376 ~ 9001851 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 553805 8727720 ~ 8782842 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 287 9350196 ~ 9378551 (+)
arnt2 arnt2 coding downstream 68616 9418525 ~ 9529240 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding downstream 196837 9546746 ~ 9590337 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 275280 9625189 ~ 9754446 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding downstream 420865 9770774 ~ 9774454 (+)
G178763 mthfs non-coding upstream 3769 9320960 ~ 9332878 (+)
G178764 NA non-coding upstream 26464 9309317 ~ 9310183 (+)
G178760 NA non-coding upstream 35309 9300994 ~ 9301338 (+)
G178761 NA non-coding upstream 36990 9299386 ~ 9299657 (+)
G178741 NA non-coding upstream 58531 9277887 ~ 9278116 (+)
G178789 NA non-coding downstream 132426 9482335 ~ 9482920 (+)
G178798 NA non-coding downstream 284850 9634759 ~ 9640636 (+)
G178817 NA non-coding downstream 400536 9750445 ~ 9750713 (+)
G178834 NA non-coding downstream 432632 9782541 ~ 9782746 (+)
G178839 NA non-coding downstream 474537 9824446 ~ 9907446 (+)
LOC113536578 NA other upstream 1065897 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 1088559 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 1091623 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 1092999 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 2065327 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1460761 10810670 ~ 10850923 (+)
G179632 NA other downstream 1746244 11096153 ~ 11098811 (+)
G179643 NA other downstream 1810437 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2078704 11428613 ~ 11430897 (+)
G180121 NA other downstream 2705049 12054958 ~ 12055749 (+)

Expression


Co-expression Network