pfklb (pfkl,pfklb,LOC108444469,LOC105912658)


Basic Information

Item Value
gene id pfklb
gene name pfkl,pfklb,LOC108444469,LOC105912658
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7253361 ~ 7266329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930725.2
GCATGGAGCACAGCCGTGTCTTGTGAATGCTGAAAAGGTCACTACCCGAGCAGCAGTGGTCTCACTGAGGCGGatctatttttttcattttttttgtcagattcAAAGCACAGGGTTTATAAATACTGCTGTAGACTCCGGGTCTCGGAAATCAGCAAGCTATCAGCGGgttgtgtgtaaatctgtgCATCATGTTGGTGGATTTTGAGAAGCTGCGGATGACAGGAGCTGGGAAAGCCATTGCTGTTCTCACAAGCGGTGGAGATGCACAAGGAATGAATGCAGCTGTTCGTGCTGTAACACGAATGGGCATTTATGTTGGAGCCAAAGTCTACCTGATCTATGAGGGATATCAAGGACTTGTGGATGGTGGTGACAACATCAAACCTGCCAACTGGCAAAGCGTGAGCAACATCATCCAACTGGGTGGCACAATTATTGGCAGTGCCCGCTGTAAGGATTTCACTACGAGAGAGGGTCGCCTGGCAGCTGCCTTCCACCTGGTGCAGCGCGGCATCActaatttatgtgtgtgtggtggagatGGCAGCCTCACCGGAGCCAACATCTTCCGCAATGAGTGGGGTGACCTGCTGGCACAGCTAGTACAGGAAGgGAGAATCACAGACTCATTGGCTCAGCAGCACACCCATCTGAACATTGTGGGTCTCGTGGGTTCTATTGATAACGACTTCTGTGGAACAGACATGACCATTGGAGCTGATTCTGCCTTGCATCGCATCATGGAGGTCATTGATGCAATCTCCACTACTGCACAGAGTCATCAGAGGACATTTGTCCTGGAAGTGATGGGACGTCATTGCGGGTACCTGGCTGTCGTGTCTGCTCTGGCATCTGGTGCTGACTGGGTCTTTATCCCCGAGGCTCCTCCAGAGGAAGGTTGGGAGGACCACATGTGTGCTCGTCTGGGAGAGagcCGCAGTAAGGGCTCTCGTCTCAATATTGTGATCATTGCAGAAGGAGCTATTGATAAACATGGCGAGCCCATAACCTCCAACTATGTGAAGGATCTTGTAGTGAACAGACTGGGTTATGACACTCGGGTCACTGTGTTGGGGCATGTACAGAGAGGAGGAACACCTTCCGCCTTCGACCGGGTGCTGAGCAGTAAGTTGGGGGTCGAGGCAGTTGTGGCCCTGCTGGAGGCAACTCCAGACACTCCAGCGTGTGTGATCGGTCTGTCTGGTAACCAGGCCATGCGTCTCCCTCTTATGGAGTGTGTCAATATGACGAAGGAGGTGCAGAAAGCCATGAATGAGAAACGATTTGATGAAGCCATTCAGCTACGTGGAAAGAGCTTTGAGAACAACTGGAACACCTATAAACTCCTGGCTCACCAGAAACCAGCTCAGTCAAAGAGTGAACACTCCATGGCGATTTTAAATGTAGGCGCCCCTGCAGCTGGGATGAACGCAGCTGTGAGGTCAGCAGTCAGAGTGGGTCTTGCTCAGGGCCTCAGAGTTTACACAGTCAACGATGGCTTTGAAGGCCTGGCCAAAGACATGGTGACTGAAGTGCACTGGCATGATGTAGCAGGCTGGACCGGCCAGGGAGGCTCACTGCTCGGGACTAAAAGAACCCTGCCAAACTCTTGCATGGAAAAAATTGTGGAAAGTATTGGCAAGTACAACATCCAGTCGCTTTTGGTTATCGGTGGATTTGAGGCCTATGAGGGAGTTCTCCAGCTGGTGGAGGCGCGGGGACATTATGATGAGCTCTGCATTGTTATGTGTGTGATTCCTGCCACTATAAGTAACAATGTGCCAGGGACAAACTTCAGTATTGGAGCAGACACAGCTGTCAATGCTGCTATGGAGAGCTGTGACAAAATCAAGCAGTCTGCATCTGGAACCAAAAGGCGTGTCTTTGTTGTAGAGACTATGGGTGGGTTTTGTGGATATCTGGCAACAACCACAGGCATTGCTGTTGGGGCAGATGCAGCTTATGTCTTTGAAGAATCCTTCAGTATCCATGACTTAAAGATGAATGTGGAGCATTTGACGGAGAAGATGAAGAATGACATTCAGCGGGGCCTAGTGCTGAGGAATGAGAAGTGccacaaacactacacaacagAATTCATCCACAACTTGTACTCAGCCGAGGAGGGTATCTTCGACTGCAGGGTTAATATACTGGGACATTTGCAGCAGGGTGGGGTTCCAACACCCTTTGACAGGAACTTTGGCACTAAAATGGGTGTGAAAGCTGTGTTGTGGCTCACCCAGAAAATGAAAGAGACCTACAGACAAGGACGTGTGTTTGCCAATGCGCCAGACACAGCATGCGTTATTGGCATGAACAGAAAAATGATGTCATTTAGCCCAGTCACAGAGCTCAAAGACCATACCGACTTTGAACACAGGATGCCAAAGGAACAGTGGTGGCTAAATCTGCGTGTCATGCTGAAAATGCTTGCCAAGTACCAGACTCACTTTGAGGAGTATGTTACAGGAGATATAGAGCATGTGACCCGCAGGTCCCTCAGTATAGAGACGGGATTCTGAAGAGCTGAAACCAGGCACCAGTACTAACAACCCTGACTATACCGAATACAGTGTATCCCAGTCAATAAATCCAGTGACCACTATCAAAACAGTGCTTACCTCAGTAGCTTACTGTTTATCCAATGTTATGTTTCTGTACCCTCATGACATACTTTGCATCACGTTTCTCAGAATGGCAATCTGTAATACTGGATTTGTTTCCTTTACTCACAGATTTCACAGATGGAAGTGTAGAGTATCGGTATCTTTTTGATTTAGTGTTAAATGCTGTAACGGTACATGTGCACTATGTAGTATTAATTGCACATTTAATCATGGAATCCTGTGTGGTATTGTGTTTTATGGCATTCCACATGCATTACTGTAACACTTTAATCATGACTTGTCATGTTTGTTAGGCTTGTAATTAAAATGCTGCAAATTAAACTtaagaaaacagtaaaaacatcctgtaatttaaatatgaatgcAATTCAAtgaattcaaattaatttataacattttctaATATTCACTAGATCTGTGAAGCACCAGATCtcatttcaaaatgaatttATCAGCCTTCTAAAGAGAAGTCtaaatgtttctaaataaaTTTAGTTTGCTTTTTTGGAGAGTGAAATTAATTTTTGAACTTTGAATGCTGTTTGGGTTATACATTCTAATTATGCTTTCCAACTAAAGTTGTTctgataatatattttttttcaattattgaTGATTGCCATAGTATTGTGTAAGTTAACTTTTGTTACTTGTTGTTTATTTGGCAGCTGTAAAATCCACTGTAATGTGCAATCTGAGTGATCAGCtgccctttctctctctctcttgatatTTCACTGTTCCGtagaaatgttaataaattgCATTAGTTATTGTC

Function

symbol description
pfklb Predicted to enable several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Predicted to be involved in canonical glycolysis; fructose 1,6-bisphosphate metabolic process; and fructose 6-phosphate metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be located in cytoplasm. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Is expressed in liver; male organism; nervous system; somite; and yolk syncytial layer. Orthologous to human PFKL (phosphofructokinase, liver type).
pfkl Enables several functions, including 6-phosphofructokinase activity; anion binding activity; and fructose binding activity. Involved in several processes, including fructose 1,6-bisphosphate metabolic process; fructose 6-phosphate metabolic process; and glycolytic process. Located in cytosol; extracellular exosome; and membrane. Part of 6-phosphofructokinase complex.

GO: NA

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930725.2 True 3411 mRNA 0.45 23 7253361 7266329

Neighbor

gene id symbol gene type direction distance location
orc2 orc2,LOC107564576,LOC107564577 coding upstream 6186 7239467 ~ 7247175 (+)
ldb1b ldb1,LOC108444470,LOC108270891,LOC103353370,LOC103150493,LOC107702035,LOC104963201,LOC101479469,LOC107700700,LOC107567630,LOC107564569,LOC104922276 coding upstream 16266 7206539 ~ 7237095 (+)
cant1b cant1 coding upstream 73598 7166588 ~ 7179763 (+)
afmid afmid coding upstream 88440 7156800 ~ 7164921 (+)
syngr2b LOC108271031 coding upstream 103265 7143095 ~ 7150096 (+)
eif4a3 eif4a3 coding downstream 6514 7272843 ~ 7279382 (+)
opn6a LOC108271086 coding downstream 15768 7282097 ~ 7289517 (+)
map1lc3c map1lc3c,LOC107702025 coding downstream 90590 7356919 ~ 7361930 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 217914 7484243 ~ 7492243 (+)
tbce tbce coding downstream 234749 7501078 ~ 7513789 (+)
G177233 NA non-coding upstream 98017 7155121 ~ 7155344 (+)
G177166 NA non-coding upstream 291822 6960487 ~ 6961539 (+)
G177180 NA non-coding upstream 293154 6953643 ~ 6960207 (+)
G177141 NA non-coding upstream 345609 6904969 ~ 6907752 (+)
G177165 NA non-coding upstream 366958 6885578 ~ 6886403 (+)
G177268 NA non-coding downstream 5186 7271515 ~ 7272538 (+)
G177274 NA non-coding downstream 13234 7279563 ~ 7279767 (+)
G177271 NA non-coding downstream 27671 7294000 ~ 7344522 (+)
G177302 NA non-coding downstream 72096 7338425 ~ 7343270 (+)
G177487 NA non-coding downstream 143756 7410085 ~ 7410291 (+)
LOC113536390 LOC108271079 other upstream 120893 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2592225 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2608163 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2953994 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 3595071 3647355 ~ 3658290 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1502 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 977026 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 978623 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 981687 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 987092 8253421 ~ 8270750 (+)

Expression


Co-expression Network