saxo2 (saxo2)


Basic Information

Item Value
gene id saxo2
gene name saxo2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10251725 ~ 10257578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930728.2
TGCCATAGAAACCGTGTGCGGTGTGTCGCGAGCGCGGTGTAGAGAGGTTGGCAGTGAGTGCGGCTCGTGAGACTGGAATTAAATAAAGCCGGTTTAAAGTCACTGCTGTTTCAGTGTTACAGACATGAagcggctgtgtgtgtgtgaaatctgcAACTGCGGACGCCACCGTTGCACACAAGAGCCCACGGCACTCTACAGGAAGGGCAGCCAGGGTTGTGTGGTGAGTGAGTACACTGAGAAATACCCAGGCTACAAGAGTTATCAGCCACCCAAGAGTCTTAAGcccaaacaggaaaaaaagagtaGCCGTGAACCGATGGAGGGAACCACCACCTTCagGTCTGATTTCGTTCTGTATAAAGTGAGCCAGCGCCCTGGAAAACAAAGGGCTGAATACAAACCTAATCCAGGTGAGATTGACTTGGCCACTACCTACAAGCAGGAGTTTAGCCCTTATAAGCTAGAGCCTGTTATACCGTGGCGTCCAAAGGAGAGGATACAAGGTGCTACCGGGAAGCTGGACACAGTACCAACCTATAAAGaaCATTTCCGTCAGTGGGAAATTAGCAAGTGGGAGTCCCCCAAACACAAGGTGTCTTACCATCCTCCAGCTGAGAAGTTTGGAAATGCCACAACATTCCAGGATGATTTCATTCCACGAGGTCTTGTTCCACGTGAGAGCTTCAAACCTTCAAATGTAGCCAAGCTGTCTGATGCTCCTTTCGATGGAGTGACCAGTAACCAGCTGAATTATATCCCTCACCCAGTGGAAGTGCATTTAGTCAAAGCTCCTCATGAGTACAAACCCAGTGACCAGCCTTTCCAAGACCTCACAACGCACCGGAATGACTTCCAGGGCCTGGCAGGCCAAATGCCTAAGAGCTGCAAGCCTGAGCACATCAAAATGTCCTGTGATGCACCCTTACAGAGCAGCACTGAGTTCCGTGATCGCTTCCAGCCGTGGGCTGCGTCTCCGACACGGCTGCAGAAAACGTTGGAGTACGTGAGTCCTACAGAGGAAATGGATCTAAACACGACAACTGGCACAACCTTCATCAAACACCATATCCAGCCATTCGTCTCCGCTAAGCCTCTGCCGAAGCCAATTCGTTCCTCTGTTCCTTTTCAAGGCAACACCACCACGAAGGAGGATTTTAAAGCCTGGAAAGCCCAGCGCCAAGAAATGATCCGCAAAGCCCCAGAAATCCACAGAGACAGCGGGAAGATGGAGGACATGAGCACCTTTAAGGCCCATTACATCCAGCACCAACTGCAGCCCAATATCAGCTGCAAGCCTCTCACTGCCCCACTGCGGAGTGAAGCACCTTTGGATGAAGAAACCACGTACCGCAATGAGTTCACGCCCAAAGAGATAAGAGTGTGTCCAGCCAGCTTGGAGTCAGTGCCGGGGTTTGTCTTTGAGAAGGTTGATGACAGAGGTCACAGGTTCTTCCGTAAACTGAGCTCCCAGGAGCAGATGTCTACAGGGTGTGAGGTGCAGGCTCCTAACGCAGTGGCCATGGTGTCTTAAGAGCAAAGCTagctaaaggaaaaaaataataaactcatCTCTCATAACTTAAAGCTTAATCAGTATATACGATTGTTTTAAAAGGTAAATCTAAGTGGCATTATGACAAgattaatgaaatgtatttaaaaaggtAAGAAGTATCAGATTGAACATCTTTAGACTAACAGTGTTGCCATGATGAATGAAAATGGTGGAaaggtttaaatgttttaaaagaatTCAAACTGTATAACAATTAGATAGACAGAAGTAATTTTATATGAAATTGCATATGGTGATTATACTGGTGGGGGAACGGAGGCTTAGtggtttgcctcacacctccggggttgggggttcgaatcccgcctcccccttcaggggtttcctcccggtactccggtttcctcccccagtccaa

Function

symbol description
saxo2 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule anchoring. Predicted to be active in microtubule cytoskeleton and sperm flagellum. Orthologous to human SAXO2 (stabilizer of axonemal microtubules 2).

NR:

description
PREDICTED: stabilizer of axonemal microtubules 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930728.2 True 1937 mRNA 0.48 5 10251725 10257578

Neighbor

gene id symbol gene type direction distance location
il16 il16 coding upstream 429496 9792080 ~ 9822229 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding upstream 477271 9770774 ~ 9774454 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 497279 9625189 ~ 9754446 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding upstream 661388 9546746 ~ 9590337 (+)
arnt2 arnt2 coding upstream 722485 9418525 ~ 9529240 (+)
lmnl3 LOC108270534,LOC108439631 coding downstream 202543 10460121 ~ 10479323 (+)
cx36.7 LOC108270620 coding downstream 224593 10482171 ~ 10483611 (+)
LOC113536420 NA coding downstream 297707 10555285 ~ 10563493 (+)
rubcn rubcn coding downstream 307681 10565259 ~ 10579393 (+)
tctex1d2 tctex1d2 coding downstream 360234 10617812 ~ 10623164 (+)
G179085 NA non-coding upstream 177708 10073818 ~ 10074017 (+)
G178839 NA non-coding upstream 344279 9824446 ~ 9907446 (+)
G178834 NA non-coding upstream 468979 9782541 ~ 9782746 (+)
G178817 NA non-coding upstream 501012 9750445 ~ 9750713 (+)
G178798 NA non-coding upstream 611089 9634759 ~ 9640636 (+)
G179425 NA non-coding downstream 229119 10486697 ~ 10491773 (+)
G179426 NA non-coding downstream 234455 10492033 ~ 10492469 (+)
G179427 NA non-coding downstream 239070 10496648 ~ 10497140 (+)
G179428 NA non-coding downstream 239910 10497488 ~ 10497712 (+)
LOC113536738 NA non-coding downstream 525547 10783125 ~ 10784114 (+)
LOC113536578 NA other upstream 1980975 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2003637 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2006701 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2008077 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 2980405 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 553092 10810670 ~ 10850923 (+)
G179632 NA other downstream 838575 11096153 ~ 11098811 (+)
G179643 NA other downstream 902768 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 1171035 11428613 ~ 11430897 (+)
G180121 NA other downstream 1797380 12054958 ~ 12055749 (+)

Expression


Co-expression Network