swap70a (LOC108271193)


Basic Information

Item Value
gene id swap70a
gene name LOC108271193
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6794539 ~ 6807030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930731.2
CGTGCTTCTCTCACACAGCTCCAGCAGAGCGCACAGGACTGACAGTGCGGATGTTGGGCATAGCCGGTGTCTGACTGACTGCTGTGTACATTGGCAGGAGTTAACAGGTGTAAAATGGTCCATAGAGAGGAAATCTTAAAGCCGGTATGGCACGCGTTTGGCGCGCTGGATGTGGACCGGAAAGGAAAAGTGTCCAAGTCTCAGCTGAAGGTTCTGTCACACAACCTGTATACGGTGCTGCAGATTCCATATCAAACCTCTGAGCTGGAGGAACATTTCAAGGACGACGATGAGGGACCCGTGTCCACGCAAGGCTACATGCCCTATCTGAACAACTTCATCCTAGACAGGATCCAGGGCAAGTTTGATTTTCTGGAGCTGAATAAAATGTGCTGGACGCTGTGCGCCCGTAAGAACATCTCCAACAACCGCATGCTCATCTCTGACGAAGATGCTTTCAAAGTCTGGTGTATTTTCAACTTCCTGTCTGAAGACCGATATCCGCTTGTGATCGTAACAGAAGAGATCGAGTATTTCCTGAGGAAGCTGATGGACGCCGTGAGCGGGAACTGGAATGAGGGCAGGTTTGTGGACTACAAGGCCCAGCTGAGTTTGAAGCAGAATTGTCTGAATGTGTGGGAGCTGATTGAGCTGGTGGGTATGGGCCACTTCACCAAGGGCATGGACCGCCAGACCACTAGCATTGGCATCACTCAGGTCTTCCAGGAGCTCATTCTGGATATTCTCAAACAGGGCTATATGACGAAAAAAGGCCACAAAAGGAAAAACTGGACAGAGCGCTGGTTCGAGCTGCGTCTCGATTCAATCTCGTACTATGTGACGGAGGACCTCAGTGAGAAGAAGGGCTCCATTTCACTGGACCGTCACTGCTGCGTGGAGtctttaccagacagagaaggaaagagaaaccTCTTTATCATCAAATGTCAAGACAAAAGCCTCGAGATCAGTGCCTCGGACAAAAAGAAACGGCAAGAATGGATTCAGGccatTCAGGACTGCATTAACCGGCTGAGGCAGGGTCTGTCTGCGCCCCACCGTGAGGCTCGACAGCGAAGACGAGAGCTGCGCAACCGCCTGCAGGCAGAACAAGTGCGGATGGAGGGACAGATGAAGGAGCTGCAGTTGGCCAACgagaagaaacaaagagagcTGGAAGCCATGAGGAAGAATCTGGACGAGGCGGCAGCGAGAGCTGTGATGGAGGAGCAAAGAAGAATTCGAACTCAAGCAGAGCTACAGAACAACTACAGAATGGacctggagagagaaaaaatgGTGCGGCAGCAGATGGAGGAGCAGGTAGATCAGATGTCGAGCGAGCTCAGGTTGTACCTGCAGCGTGTCCGGGAGCTGGAGGACATGTATCGTCGACTGGAGGAGGCGTTAGAGGACGAGAGACAGGCGAGACAGGATGAGGAGAATCTGCGCAAACGGCAGGCCAGGCTGATGGATGAGGAGGTGAGGAAGCGCACTGAGCTGGAGCAGATGCACCTACAGCAGCAGCGAGCCATCAGTCAGACACAGCAGGAGAAAGAGCAGCTGAAGCAGCAGAGGTTGGAGCAGGACCGCGCCCTGCAGATGGCAATGCAGCAGCTGGACAGTCTCGAACAGCAGAGACAGGGGGCACTACAGGAGTATGAGGCTGTGAAAAGGAAACTGGAGCAGGCAGAGAACAAGACGAAGAGCTGGAAGGATAAAGTGGCGCAGCATGAAGGGCTAATTCGACTCATCCAGCCAGGCAGCAAAGGTCCGCAGAAAATGACCAACTGGGGTCCGGCGGCATTCACGGACAAAGAGCTGGAAATGAGAGAGAAGATTTGGCAAGAGAACAAGAACAAACCAGACAGTGCCCTATAATCTGTTTTACATGCTTGTAATTTTTTAAGGCAAATGTACACATTTCTTAATCCTGATTTATATATTACTGAGATGGTTGttcttttataattttaagattttctaataatgtattatacagcactgtgtgttGCTGCctaacagctccagggtccccattTCCCAAAAACCTGCTGGTAGGCGAACTGgagactctaaattgcccctagttgtgaatgagtgcatgaatgtgtgtgtgtgcacatggtgTCCTCAGTGAACcagtgtcccatccagggtgtattcccacctcacccTCTAGTGTTCCCGCAATAGGCaccggatccactgtgaccctgatcaggataaagcgcttactgaagatgagctGAATGTATAAACAGTACGAGCTTACAGATAGAATAAACTGCAGCTGGAGTGTAATCATATCAATCACACGAATAAATAAGACTTACGGTGGATTTGTGTCATAATTTTTAAATCTCAGTTTCActcttacactttttttttctatattcaggaAATTAAATATGTTGTCAAGTGGAAATTCCACACACTGTAACATGCATTACTGTGAGTTCTTAAATATTAACAGTTAGGAAGAACAGCGTGACGCCGTGGTTATACGTGTGCAACTGTGCAGTCTCATCCACTAGATGTCACTGTCATTCTAATAAATTGTCCAGGATCTTGTAGCATCCTTCTCTAAACATCTCTGACACTGTGCATGATAAGacataacataataatatacagatGGACTGTATCGGGCTCTTTGATGCTACATGCTGTCACTATTCAAATGATTGCAGCGATGTTCTCACACTGATAAAAGCTCCCTGTTGAAGGGTTCTCTTGGGTCTCAGGGAGCCACTCTCCAGGGcttataataaacaaacacagaagaaTGATGTCTGTTTTGATCCACTCATTCTTCTGAGTACTGCTCTTTTGCTTGACTTGCAGATTTCTGAAACTTTCGCAGCACTTGTCCTGAAGTTCTCACAATAAAATGatcgtaaaaaaaaa

Function

NR:

description
PREDICTED: switch-associated protein 70

GO:

id name namespace
GO:0007096 regulation of exit from mitosis biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930731.2 True 2910 mRNA 0.48 12 6794539 6807030

Neighbor

gene id symbol gene type direction distance location
adma adm coding downstream 143404 6648748 ~ 6651135 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding downstream 151416 6621904 ~ 6643123 (-)
ctr9 ctr9 coding downstream 226782 6555719 ~ 6567757 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding downstream 332713 6358137 ~ 6461826 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding downstream 497663 6227094 ~ 6296876 (-)
LOC113536768 LOC108270562 coding upstream 2793 6809823 ~ 6816713 (-)
clcn4 clcn4,LOC108443897,LOC103025096,LOC107552404,LOC107705120,LOC107558374 coding upstream 24218 6831248 ~ 6845245 (-)
shroom2b LOC108271435,LOC105905657 coding upstream 54321 6861351 ~ 6886413 (-)
mfn1b mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155 coding upstream 93218 6900248 ~ 6913318 (-)
si:ch73-100l22.3 LOC108271015 coding upstream 133738 6940768 ~ 6954744 (-)
G177097 NA non-coding downstream 55931 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 205243 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 242957 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 243277 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 249469 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 251502 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 330599 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 349198 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 460531 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 482855 7289885 ~ 7290092 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1086235 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1597721 5139610 ~ 5196818 (-)
G176307 NA other downstream 1713644 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2290210 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2798086 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 49725 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 673392 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 773404 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 868886 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1437619 8244649 ~ 8244721 (-)

Expression


Co-expression Network