tctex1d2 (tctex1d2)


Basic Information

Item Value
gene id tctex1d2
gene name tctex1d2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10617812 ~ 10623164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930758.2
CTGAAAGTCTGGCAGTTGTTATAGTAACGGCGGTGTGTTTATGTTAAAGCTTTAATAATGACGGGGTCAGAgcagggtgccaatacttttctCATCAGGCCAAATTATCAACACAGgttCAGGGTGTCGGTGGTGAGAGAGTGTATTAGAGAGATCCTGAGAGAGAATTTATCAGGTGTTAAGTATGATCCTGAGGAAACACCGTCACTCACACGAACACTCGCTGACGCCATTAAACACCGAGTTAAAGgtctGGGTTTGGACAGATACAAACTGGTGGTGGAGGTGATGATCGGAGAACAGAGAGGACAGGGTGTGACGATGATGTCTCGTTGTTTCTGGGATTCAGACACTGACGGCTGTGCTAAAGaagtttacattaatgaCAGTATGGTGTGTATGGCTGCTGTATTTggagtttattattattgacagaggaagagaagctatgatctaaacacacacactcgccgtgaTGGACTCATACACCActtttctctcacactctcataaaccttttctatcttttttttggaagaaataaacacagcattagtatttattcattatttatttacattcatttttaaatagcaaCTATCagaataactcatttaaaatgtataaaagaacACACGCATGCCTCAGCAGTAAAGCACCTGAAAACCTTTATGCACTTCAACACAGTTTATTAATGGTGTGAAAGTGCAAGTGTGTTTACAGGAgcttttatttcagcagttaaacactgacacAGTGAATTTTATTTCCTGTGATTTCATTGTGTTTGCCTTCAAACTTTCACCTGATTGTTGACAGAAACAGTTTGATAAACAGCTCTCAGGCTTCAGAAAGGAAACAAGAGGCAAGAAAACATCCAGACAACACATGAGTGAAAGTAAAGACACATTTGGGTCCTGTATCTACATTTATATCTgagtaaaaatacaataaaactgGATTATAAATCCAGAAAAATATGTg

Function

symbol description
tctex1d2 tctex1 domain-containing protein 2

NR:

description
PREDICTED: tctex1 domain-containing protein 2

GO: NA

KEGG:

id description
K22866 TCTEX1D2; tctex1 domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930758.2 True 984 mRNA 0.38 5 10617812 10623164

Neighbor

gene id symbol gene type direction distance location
rubcn rubcn coding upstream 38419 10565259 ~ 10579393 (+)
LOC113536420 NA coding upstream 54319 10555285 ~ 10563493 (+)
cx36.7 LOC108270620 coding upstream 134201 10482171 ~ 10483611 (+)
lmnl3 LOC108270534,LOC108439631 coding upstream 138489 10460121 ~ 10479323 (+)
saxo2 saxo2 coding upstream 360234 10251725 ~ 10257578 (+)
LOC113536756 LOC108271257 coding downstream 27094 10650258 ~ 10674052 (+)
LOC113536667 armc9 coding downstream 490480 11113644 ~ 11160226 (+)
b3gnt7 b3gnt7 coding downstream 552933 11176097 ~ 11181854 (+)
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding downstream 737800 11360964 ~ 11379995 (+)
alpi.2 LOC108270538,LOC108410619 coding downstream 761642 11384806 ~ 11392946 (+)
G179428 NA non-coding upstream 120100 10497488 ~ 10497712 (+)
G179427 NA non-coding upstream 120672 10496648 ~ 10497140 (+)
G179426 NA non-coding upstream 125343 10492033 ~ 10492469 (+)
G179425 NA non-coding upstream 126039 10486697 ~ 10491773 (+)
G179212 NA non-coding upstream 357204 10256766 ~ 10260608 (+)
LOC113536738 NA non-coding downstream 159961 10783125 ~ 10784114 (+)
G179558 NA non-coding downstream 181941 10805105 ~ 10805311 (+)
G179561 NA non-coding downstream 185872 10809036 ~ 10809271 (+)
G179572 NA non-coding downstream 240485 10863649 ~ 10863850 (+)
G179628 NA non-coding downstream 446425 11069589 ~ 11069817 (+)
LOC113536578 NA other upstream 2347062 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2369724 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2372788 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2374164 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3346492 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 187506 10810670 ~ 10850923 (+)
G179632 NA other downstream 472989 11096153 ~ 11098811 (+)
G179643 NA other downstream 537182 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 805449 11428613 ~ 11430897 (+)
G180121 NA other downstream 1431794 12054958 ~ 12055749 (+)

Expression


Co-expression Network