LOC113536666 (gpr88)


Basic Information

Item Value
gene id LOC113536666
gene name gpr88
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12587473 ~ 12590364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930763.2
TTCTCTCACTCAGTCGCGTGCGCTACAAAACAGAGGATAGAGGGAGGATGGTGAGAGGaagcgcgcgcgcgcacacacacacacacacacacacgtacaaaaCCGCGGCTGCAGCATCAGCACCAGGGAAGACGAATAGAGCGATAGAGCGATAGAGCGATGCACGCGCACTCCCTTCCCTTCGTTCGGACAGTGagcggtgatgtgatgtgaacgTGAGGCTCGTGAGCGGTCATGCAGAACAGCACGGCGGTTCGGTGCGACACCGGAGCCGCGGAGCGCATCTCCATCGCCGCTCTGTTCTCCTTCATGTGCGCTCTCGGCACTGTCCTCAACCTGTTGGTCATCGGTCTGGTGTTGAGCTTCAAGAAGCTGCGCACAGCGAGCAACGCCTTCATCGTGAACGGCTGCGCGGCCGACTTGCTCGTGTGCGCCTTGTGGATGCCGCGCGAGGCGGCTGTGGCGGCGTCAGTGCCTTCCCCGCTCTACGGCGCCGCCCCCCGGGACGCGCTGCTTTTCCTCGGCGCCACCGTATCGCTCCTGTCGCACTCGCTCATCGCCGTGAACCGCTACGTGCTGATCACGAAGCCGCCCGCCGCCTACCACGCGCTCTACCAGCGGAGGCGCGCGCAGGCCATGATCGCCGCGTCGTGGCTCGTCGCGTTCGCGTGCCTGCTGCCGCCATGGCTCGCGGTGGCTCGTCACCCGGCATTCGCGTGCGGACtgatgctgctgatgctgctCTCCGAGCCCTGGGCCGCCGCCACGCTCGCGCTCACCATTCTCGGCCAGACCGCGGTTGTGACGTACTGCTACTTCAAGATCTTCCGGCGCGTGCAGATCAGCGCTAAGCGCGTGAGCGTGCTGCACTTCCAACTCGTCAACCACCTGCCGTACTCGTTCCCGAGAAAGGACAAACGGCTCGGCGTGCACGTGCTGACCGTGTGCCTGGTGTTCGTGTTGACCACCGAGCCCGTGCTGTGGACCCTGACCGCGGGCCTGTTCGCTCCCGTACCGGCGGCGTTCCGCACGTGCGCCTGGCTCCTCTTCTGCTCCGTCTTCGTGTCCGACCCGTTCCTGTACACGTGGAAGAACGAGGAGTTCAGAAAGGCTTTCAGGTCCGTCCTGAGACGGGACTTCTGGCGAGGCTCCACCGTGGCCGCTGAGCCCGTTACCGTCAGCACCGTTTCTCACGTTTTCCCCCGACAGAACAGCCGCAGGGCGTTTTTAGCAGAGCTGAGCTAAGAGgtgttttaaataatgcagCATTTAACGCGCCCTCGCTGACTTTCTCTTACAGTGTCCCCCGGTCCGGATCCCTGCTCCAAATATCACCctccccccccttttttttaatctttaaactttttttttttttttaacaatctcAGAAATCTCGTACTAAACTGGGCCTTTGCTTGACACTATGGTGGCCCCACCAAGTGTACATCTTTTCTAATGTAGCATATATTaacaaaatgatttaaggtgCATAAATGGATGAAATCAGATATAAGGAAAGGGACACTTTACACTCGAATAGTGCAGTTTAAATGAAGCTTATTCACATTCACTACATTCACATTGCAGATCTCAGCTCCATTCCCATTTACTGTTCACATCCTAGctttagttttaataaaatggagGCAACTCTAACAACTGATCACCtcatattgtttataaagtTGATGTGTGTTAGAAACTGCGAATTTAAAAGAGTGGAAATCGCATTGACGGATCTGTATCAGATTTTAATGCCACATTTACACTGTCATGCCTCATATATACACTACccttccttgtcactggggtggtagcCTCATCTTTTGTAGATGATATGTAgatatagtgtacctttttaaaatgattacataAATGGACTGTAATTAGTTTTTAGTGTGAAGTTAAAAGGTAACAGATACATGCTAAAGGTACAGGTAAAGGTGTAAGcttgagggtaccaccccagaCAAATAAAAGTATGGTTTAGTACCTTTCTTCTGACAATGTAAAATTCAGTATATTGTTGCTGTTCACACTAATAAAGAAGTCACCTCAGAGGAACATTGATAAAGTCAACTGTAGACCTCAAGAGCCAAAGTTACCCAGGCATTGCGACTGACAAAcctttttagaaaaagaaaaaaaaaaaacctttctttttaaaataaaaaataaatggaagtaaatacttaaaatatatttttaaatgtagcatTTGCTTTGCTCCTTTGAAATTTTGTGTTATGTCCCCAACTACTTCATCTACAGGCTTCATGACAGCACAAACACATAacttagcatgctagctagttaCTGATATGACCCTAACTCTAATTAGTTTCCTAATTAGGTTTGCAGATAGCATTCAAATGAGCAAGAAAACACACTCCgctacacacactgcttcacaCTCTTGTCCTTGTGCTGCAAGTGGCTATCTGATACACATCAGCTACACAATTTCACGTTTTTCCTATTCTCCCAAACCTGATCCAGCTCTCTGGCTCATTACGAAGCCCTCAGGAGTGgagctgaaacacactgatggaggttgtacacactcctgagttgTGAGAGAAAGGTGGTGAGGGCGTGTTAATAATGGTATTGAAACACAGCCATGGAGGGAGGGTCTGCAGAGTTTATCCTTCTACCTCATTACTCAGAAacaggaaagtgttttttttattattctggacattttacagtgaataaaatgatttgtgtgtgtgttttttggtaAAATGGAACACTTGTGAAGTAATACACAGCtcagaaacaaaacacttgACTTGAAACAAGACGGCAACATtgaattttaagaaatatttgaaTATCCTGCTGATGCTGATCTTTAAATAATGAGGTATGTTTAAGTCTGATCTC

Function

symbol description
gpr88 Orthologous to human GPR88 (G protein-coupled receptor 88).

GO: NA

KEGG:

id description
K08422 GPR88; G protein-coupled receptor 88

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930763.2 True 2892 mRNA 0.49 1 12587473 12590364

Neighbor

gene id symbol gene type direction distance location
LOC117598419 gpr88 coding upstream 20872 12565218 ~ 12566601 (+)
rtca rtca,LOC107653637,LOC107715104,LOC107669846 coding upstream 79570 12497851 ~ 12507903 (+)
LOC113536408 LOC108271398 coding upstream 99864 12484123 ~ 12487609 (+)
trmt13 trmt13 coding upstream 107704 12473933 ~ 12479769 (+)
trnag-ucc_15 NA coding upstream 199232 12388170 ~ 12388241 (+)
LOC117598432 NA coding downstream 11967 12602331 ~ 12605805 (+)
vcam1b vcam1 coding downstream 24710 12615074 ~ 12623948 (+)
slc30a7 slc30a7,LOC107588064 coding downstream 54822 12645186 ~ 12666010 (+)
s1pr1 s1pr1,LOC107715096,LOC107592715 coding downstream 126220 12716584 ~ 12720429 (+)
zbtb37 zbtb37 coding downstream 132493 12722857 ~ 12732692 (+)
G180246 NA non-coding upstream 89822 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 100729 12486506 ~ 12486744 (+)
G180205 NA non-coding upstream 164321 12422702 ~ 12423152 (+)
G180192 NA non-coding upstream 193982 12392887 ~ 12393491 (+)
G180144 NA non-coding upstream 400503 12181015 ~ 12186970 (+)
G180267 NA non-coding downstream 63432 12653796 ~ 12654215 (+)
G180268 NA non-coding downstream 64058 12654422 ~ 12682563 (+)
G180516 NA non-coding downstream 246504 12836868 ~ 12841282 (+)
G180534 NA non-coding downstream 260596 12850960 ~ 12851179 (+)
G180695 NA non-coding downstream 545773 13136137 ~ 13203148 (+)
cdc14ab cdc14a other upstream 25692 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 253792 12328052 ~ 12333681 (+)
G180121 NA other upstream 531724 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1156576 11428613 ~ 11430897 (+)
G179643 NA other upstream 1425876 11160346 ~ 11161597 (+)
ankmy1 ankmy1 other downstream 506009 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 646113 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 660006 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 665693 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 667644 13258008 ~ 13258076 (+)

Expression


Co-expression Network