LOC113536672 (LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235)


Basic Information

Item Value
gene id LOC113536672
gene name LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8307279 ~ 8312494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930770.2
CTCTTTACACAAACTCCTGCTTGAAACGTATCCTGTTTTTGGATATCAGTTACAGTCACGATGGGAAACTGTTGCCAAACGATCTGGAACCATCCTAAAAACACAGATATCCGGCTCAGCCTGCCAgttgtttgctttgtttggCAAACTGCTATGATCATTCTCTTTGGAGTCTTTGTGCGTTATGATGAAGAGTCTGATGCTCACTGGTCTGAATATAAGAAGGAGCATAATATTACAAGTGATATCGAAAATGATTTCTACTACAGATATCCAAGTTTCCAAGATGTGCACGTCATGATCTTTGTGGGTTTTGGCTTCCTCATGACTTTTTTGAAGCGCTACAGCTTTGGTGGAGTGGGCTTCAACTTCCTTATTGCTTCATTTGGGCTGCAGTGGGCCCTGCTGATGCAAGGCTGGTTCCACTCGCTGGACCATACAGATGGCAAAATAAAGATCGGAGTAGAAAATATTATCAATGCTGACTTCTGTGTGGCGGGGTGCCTAATCGCATATGGAGCTTGTTTGGGAAAAGTCAGTCCTGTACAGCTGATGGTGTTAACTCTGTTCGGAATCACCTTATTTGCAGTAGAAGAGTACATCATCCTTGAAGTTTTGCATGTCAAAGATGCTGGTGGCTCCATGGTCATCCACACATTTGGAGGATATTATGGTCTGACAATATCGTGGGTGCTCTATCGACCACACTTAAACCAGAGCAAACGTCTCAATGGATCCGTTTACCACTCTGATGTCTTTGCTATGATTGGCTGTCTCTTCCTCTGGATGTACTGGCCCAGTTTCAACTCTGCCATTTCACCTCATGGAGATGGGCAACACCGAGCTGCCATCAACACATACCTGGCCCTGGCATCCAGCGTCCTCTCCACCTTCGCCATATCCAGCCTTTCTGCCAAGAAGGGCAAATTAGACATGGTTCATATCCAGAATGCCACCCTGGCTGGAGGTGTTGCGATGGGAACAGCAGCTGAATTTATGATCACACCCTATGGTTCACTTATTGTTGGCTTCCTCTGTGGGATCATCTCTACTTTTGGCTACCTAGTGTTAACTCCTTTCCTTGAGAAATACCTGAAGATCCAGGACACTTGTGGAATCCATAATTTACATGCTATGCCAGGTGTCCTTGGAGGAGTTGTAGGCGCCATTACAGCTGCCACTGCCACCGAGTCTGTCTATTCACATGAAGGATTGATCAACACATTTGGATTTACGGGTGAATTAGCAAAAAGGTCTCCACAAACACAGGGAGGCTATCAGGCTGCTGGTCTTTGTGTGGCTATCGCCTTTGGACTAGTCGGTGGAGCAATAGTGGGTTTTATCCTGAGACTGCCTTTATGGGGAGACCCAGCCGATGATAACTGCTTTGATGATGAAGTGTACTGGGAGCTACCCGAAGATGAAGAAAGTATCCCTCCAATCCTGGAATACAACAACCACTTTGCTAACAAGCAACCTGACACACGTATGTCGGAGTCCAACTTCTCCATAGAGCACAGCTAATCAGATTTGGAAAATTACGCAGAGATGATGCAGATGAGATCAGTGCTGAATGAAACCTATTGAATGAGGCCTTGGCAACCAGGAAATCTAAGATATAATAGCAATTAGCTTGATTTAATAGCCAAACTGAAACAAACCCAGTTTAATCTGAAAACCTATTAAAATTGCCAGGTGTCatatctgtaataataattgcttaattaactttttgctgtatgtatgtatgtatgtatgtatgtaggtatgtatgtatgcatgtatgaccacatacacacacttgaaaTACTATtgttgtaaaaaatatttttgatattggTCATTGACAAATGTAAGTTTTCCATGGAACAAGTAGCACATCTTGTTTAATGAACATATGTACAAAAGCTAGAGTTATCTTTTTCTGCTCTCCAGAATTTAATGGTTGAGGCTCATTTAATGCCCTTTTTGTGTGatatttattcagattttgcattttattgtattttcagtTTTGTGAACTTGACTGATTTAATGCCTTatgcatgcattattattatctgctgtcattaaacattttaatgaattaaaaa
>XM_026930771.2
CTCTTTACACAAACTCCTGCTTGAAACGTATCCTGTTTTTGGATATCAGTTACAGTCACGATGGGAAACTGTTGCCAAACGATCTGGAACCATCCTAAAAACACAGATATCCGGCTCAGCCTGCCAgttgtttgctttgtttggCAAACTGCTATGATCATTCTCTTTGGAGTCTTTGTGCGTTATGATGAAGAGTCTGATGCTCACTGGTCTGAATATAAGAAGGAGCATAATATTACAAGTGATATCGAAAATGATTTCTACTACAGATATCCAAGTTTCCAAGATGTGCACGTCATGATCTTTGTGGGTTTTGGCTTCCTCATGACTTTTTTGAAGCGCTACAGCTTTGGTGGAGTGGGCTTCAACTTCCTTATTGCTTCATTTGGGCTGCAGTGGGCCCTGCTGATGCAAGGCTGGTTCCACTCGCTGGACCATACAGATGGCAAAATAAAGATCGGAGTAGAAAATATTATCAATGCTGACTTCTGTGTGGCGGGGTGCCTAATCGCATATGGAGCTTGTTTGGGAAAAGTCAGTCCTGTACAGCTGATGGTGTTAACTCTGTTCGGAATCACCTTATTTGCAGTAGAAGAGTACATCATCCTTGAAGTTTTGCATGTCAAAGATGCTGGTGGCTCCATGGTCATCCACACATTTGGAGGATATTATGGTCTGACAATATCGTGGGTGCTCTATCGACCACACTTAAACCAGAGCAAACGTCTCAATGGATCCGTTTACCACTCTGATGTCTTTGCTATGATTGGCTGTCTCTTCCTCTGGATGTACTGGCCCAGTTTCAACTCTGCCATTTCACCTCATGGAGATGGGCAACACCGAGCTGCCATCAACACATACCTGGCCCTGGCATCCAGCGTCCTCTCCACCTTCGCCATATCCAGCCTTTCTGCCAAGAAGGGCAAATTAGACATGGTTCATATCCAGAATGCCACCCTGGCTGGAGGTGTTGCGATGGGAACAGCAGCTGAATTTATGATCACACCCTATGGTTCACTTATTGTTGGCTTCCTCTGTGGGATCATCTCTACTTTTGGCTACCTAGTGTTAACTCCTTTCCTTGAGAAATACCTGAAGATCCAGGACACTTGTGGAATCCATAATTTACATGCTATGCCAGGTGTCCTTGGAGGAGTTGTAGGCGCCATTACAGCTGCCACTGCCACCGAGTCTGTCTATTCACATGAAGGATTGATCAACACATTTGGATTTACGGGTGAATTAGCAAAAAGGTCTCCACAAACACAGGGAGGCTATCAGGCTGCTGGTCTTTGTGTGGCTATCGCCTTTGGACTAGTCGGTGGAGCAATAGTGGGTTTTATCCTGAGACTGCCTTTATGGGGAGACCCAGCCGATGATAACTGCTTTGATGATGAAGTGTACTGGGAGCTACCCGAAGATGAAGAAAGTATCCCTCCAATCCTGGAATACAACAACCACTTTGCTAACAAGCAACCTGACACACGTCGGAGTCCAACTTCTCCATAGAGCACAGCTAATCAGATTTGGAAAATTACGCAGAGATGATGCAGATGAGATCAGTGCTGAATGAAACCTATTGAATGAGGCCTTGGCAACCAGGAAATCTAAGATATAATAGCAATTAGCTTGATTTAATAGCCAAACTGAAACAAACCCAGTTTAATCTGAAAACCTATTAAAATTGCCAGGTGTCatatctgtaataataattgcttaattaactttttgctgtatgtatgtatgtatgtatgtatgtaggtatgtatgtatgcatgtatgaccacatacacacacttgaaaTACTATtgttgtaaaaaatatttttgatattggTCATTGACAAATGTAAGTTTTCCATGGAACAAGTAGCACATCTTGTTTAATGAACATATGTACAAAAGCTAGAGTTATCTTTTTCTGCTCTCCAGAATTTAATGGTTGAGGCTCATTTAATGCCCTTTTTGTGTGatatttattcagattttgcattttattgtattttcagtTTTGTGAACTTGACTGATTTAATGCCTTatgcatgcattattattatctgctgtcattaaacattttaatgaattaaaaa

Function

GO:

id name namespace
GO:0015696 ammonium transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG:

id description
K06580 SLC42A, RHAG, RHBG, RHCG, CD241; ammonium transporter Rh

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930770.2 True 2093 mRNA 0.42 11 8307279 8312494
XM_026930771.2 False 2089 mRNA 0.42 11 8307279 8312494

Neighbor

gene id symbol gene type direction distance location
trnar-acg_5 NA coding downstream 64476 8242731 ~ 8242803 (-)
trnar-acg_4 NA coding downstream 65101 8242106 ~ 8242178 (-)
mrpl46 mrpl46 coding downstream 126628 8173261 ~ 8180651 (-)
ntrk3b ntrk3,ntrk3b,LOC107733954 coding downstream 182494 7992004 ~ 8124785 (-)
sv2ba sv2ba,LOC108270522,LOC108428484,LOC107674753,LOC107568919 coding downstream 462252 7818236 ~ 7845027 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding upstream 17594 8330088 ~ 8366987 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding upstream 61001 8373495 ~ 8451252 (-)
LOC113536763 LOC108270703 coding upstream 140510 8453004 ~ 8469432 (-)
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding upstream 178758 8491252 ~ 8508330 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding upstream 210114 8522608 ~ 8529443 (-)
LOC113536653 NA non-coding downstream 31919 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 380221 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 552261 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 556473 7728913 ~ 7750806 (-)
G177691 NA non-coding downstream 755529 7551522 ~ 7551750 (-)
G178057 NA non-coding upstream 11125 8323619 ~ 8324164 (-)
G178208 NA non-coding upstream 209307 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 280692 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 398683 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 691150 9003644 ~ 9003852 (-)
trnar-acg_8 NA other downstream 59517 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 60504 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 62558 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 542849 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 718464 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 670688 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 1008472 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 1074997 9387491 ~ 9407218 (-)
G178942 NA other upstream 1209922 9522416 ~ 9523330 (-)
G179035 NA other upstream 1501398 9813892 ~ 9815225 (-)

Expression


Co-expression Network