ap1g1 (ap1g1,LOC106587331)


Basic Information

Item Value
gene id ap1g1
gene name ap1g1,LOC106587331
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2079340 ~ 2111029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930780.2
CGAATGGACACGTAGCGGAATGCTATAAATGCAGCGATGTTGCGAAATTTTTCCGATGATTGTCTTTCATTAAGGATGCTTATCTATTAAAAGAAATATGGCGTGGCTGGACACTGTGATTATAAGCAGTGATTATGAGGTTATAAGTGTTTAAAAAGAAGGATAGAGTTGTGTGCACGAGACAGGTGGCTGTTAGGGCTTGTTAGTTTATCATGATAGTTGATGAAACGAGGCGATTTTTTTCGTCATAAACTTTCTTTGTGGTATAGTCGATATATCTgggaaataataattatatctaGTGAACAGTTTTAATTCCACTTTAATGCGTTTGTCACAATCAGTTGAAGTTTAGGGGTAGCTGTGAGTGTAACCTTCCGCGCTGAGTAAGAAGTGCTGAGGCTAGGGCCGCCGCCATTTTGAATGTCTGGTCCCTTCCTTCCTCCGTCGCGCATAGAGAGAAGATTCCGGCTGTTTTCTGGTGTCGTTACGGCTGAGGATGCCAGCTCCGATCAGACTGCGGGAGCTGATCCGGACTATCCGGACGGCTCGGACCCAGGCCGAGGAGCGAGAGATGATCCAGAAAGAATGCGCAGCGATCCGATCGTCCTTCAGAGAAGAAGACAACACTTACCGCTGTAGGAATGTGGCCAAGCTGCTGTACATGCACATGTTGGGTTATCCGGCACATTTCGGGCAGCTGGAATGTCTGAAGCTGATCGCATCACAGAAGTTCACTGACAAGAGAATAGGGTACTTGGGGGCCATGTTGCTGTTGGACGAGAGGCAGGACGTCCATTTActaatgacaaactgcattaaGAACGATCTAAATCACAGTACGCAGTACGTCCAGGGACTGGCCTTGTGCACCCTCGGGTGTATGGGTTCATCGGAAATGTGTCGTGACCTGGCTGGGGAAGTGGAGAAGCTCCTCAAAACGTCAAATTCCTACTTGAGGAAAAAGGCAGCGCTGTGTGCGGTTCACGTCATTCGGAAGGTTCCAGAGTTGATGGAGATGTTTCTGCCGGCGACAAAAAACCTGCTGAGCGAGAAGAATCACGGAGTTCTGCACACGTCTGTCGTTTTACTCACTGAAATGTGTGAACGAAGTCCCGACATGCTCACTCACTTCAGAAAGAATGAGAAGctgGTTCCTCAGCTGGTGCGAATCCTGAAGAACCTGATCATGTCTGGATACTCTCCTGAGCACGATGTGTCTGGCATCAGCGATCCCTTCCTGCAgGTGCGGATATTGAGGCTACTGAGAATTCTGGGAAAGGGCGACGATGACTCTAGTGAAGCTATGAATGACATTCTTGCACAGGTTGCGACAAACACAGAGACGAGTAAAAATGTAGGCAATGCAATCTTGTATGAAACTGTTCTGACTATTATGGACATCAAATCAGAGAGTGGATTAAGGGTATTAGCTATTAATATCCTGGGACGTTTTCTTCTCAACAATGACAAAAACATCAGATATGTGGCACTGACATCTTTACTGAAAACAGTGCAGACAGACCACAACGCAGTTCAGCGGCATCGGAGTACCATTGTGGACTGTCTGAAAGACCTGGACGTCTccatcaaaagACGTGCGATGGAGCTGAGTTTCGCCCTCGTCAATGGAAATAACATCCGTGGGATGATGAAGGAGCTGCTGTACTTCCTGGACTCGTGCGACCCGGAGTTCAAAGCCGACTGCGCGTCGGGGGTCTTCCTGGCTGCTGAGAAgTATGCACCCTCCAAAAGATGGCACATAGACACCATTATGAGGGTGTTAACTACGGCGGGGAGTTACGTCCGAGACGATTCTGTCCCGAACCTCATTCAGCTCATCACCAACAGTGTGGAGATGCATGCTTACACCGTGCAGAGACTCTACAAAGCCCTGCTGGACGACATCTCCCAGcAACCTCTGGTGCAGGTGGCGTCCTGGTGCATAGGAGAGTACGGAGACCTGCTGGTGTCGGGCCagtgtgaggaggaggagccCATTCAAGTTACAGAGGATGAGGTCTTGGATGTTTTGGAAGGTCTTCTGGTCTCCAACTTGTCCACCCCTGTGACCCGAGGTTACTCGCTGACTGCCATCATGAAGCTGTCCACTCGTTTCAGTGGTGTGAATCGAATAAAGAAAGTGGTGTCCATATACGGCAGCAGCATAGACGTGGAGTTACAGCAGAGAGCTGTGGAGTACAATGCACTTTTCAAGAAATACGATCACATGAGGCCGGCCTTATTAGAGCGAATGCCCATTATGGAGAAAACGGCCACTAACGGCCCGACAGAGATCGTACAGACCAACGGAGAGACGGAACCTTCTGCACTGGACACGAAACACCCGCCCAGCGTCGCTCAGACAAATCAGGCGAATGATTTGTTAGACTTGCTCGGAGGTAACGACGTCCCGGTGATCCAAACGACTCTGCCCACTAAACCTGCCTCAGCCGGCGGAGAGCTGCTCGACCTCCTTggggatctctctctctctgGAGGTCCGACCCCTGCCCCTGCTCCGTCTGTGCCCATATCCCAGCCGCCGTTCCTCCTGGACGGTCTCTCCTCACAGCCGCTCTTCAACGACACCGCAGCAGctaTTCCTCCGATGACCGCGTACAACAAGAACGGATTGAAAATCGAGTTCACCTTTGAGAGGTCCAACCCGAACCCTAACATTTCAGTCATCACCATCCACGCCTCCAACTCTACCGACACAGACATGGCCGACTTTGTGTTCCAGGCTGCAGTACCAAAGACATTCCAGCTGCAGCTCCTCTCCCCCAGCAGTAATATTATCCCAGCACTCAACCAGGGAAGCGTCACACAAGTCATCAGGGTTCTTAACCCACAGAAGCAACAGCTGCGAATGCGCATCAAGCTGACGTACAACTACAAAGGCTCTCCTGTTCAAGACATGGCCGAGGTCAACAACTTTCCCCCTCAGTCCTGGCAGTGAATGTGCCGTTCACTCGATCTGTAACACCcaccgcgcacacacacacacacacacacacacacacacacacacacacaccccaatcAAGGGAACTGTGAGCAGTGGAGCGCCCTTACTCATCCCTGACTGGCCCCCTGTGACATACCTGCACATCGCTGCCCTGGGGTTGCATGGGAAACAGAGGAAtcttcccaacacacacacacacacacacacacacacacacacacacacacacacacatgcgagATGGTATGAAAACCATGACTATGATGACAATGATAaaccctttccttttttttttttgttttgttttgtttcgttttgttttgtttgtcttttctgtctttctgcttCAGAATTAGCACATCACTTCTATTACCGGCTCGCACACAGGTACTCGGTttagtgcgcacacacacgcgcacacacacacacgcacgcgcacacgcacacacaccctaaGCTGGCCCTGACCCACTTTCTGTCTGTACATGGAACATACCACTCGATGGTCACTCTGGAGAGGAGCTCAATTGGAATGAGTGTTTGATTTGTCTtgattttcttgtttttaatcttaataggcttaatttttaaaaaatgaaagattaacaaaaaaaaggttaaggGTAAATCTGAgctttaagcttt
>XM_026930781.2
GAATGGACACGTAGCGGAATGCTATAAATGCAGCGATGTTGCGAAATTTTTCCGATGATTGTCTTTCATTAAGGATGCTTATCTATTAAAAGAAATATGGCGTGGCTGGACACTGTGATTATAAGCAGTGATTATGAGGTTATAAGTGTTTAAAAAGAAGGATAGAGTTGTGTGCACGAGACAGGTGGCTGTTAGGGCTTGTTAGTTTATCATGATAGTTGATGAAACGAGGCGATTTTTTTCGTCATAAACTTTCTTTGTGGTATAGTCGATATATCTgggaaataataattatatctaGTGAACAGTTTTAATTCCACTTTAATGCGTTTGTCACAATCAGTTGAAGTTTAGGGGTAGCTGTGAGTGTAACCTTCCGCGCTGAGTAAGAAGTGCTGAGGCTAGGGCCGCCGCCATTTTGAATGTCTGGTCCCTTCCTTCCTCCGTCGCGCATAGAGAGAAGATTCCGGCTGTTTTCTGGTGTCGTTACGGCTGAGGATGCCAGCTCCGATCAGACTGCGGGAGCTGATCCGGACTATCCGGACGGCTCGGACCCAGGCCGAGGAGCGAGAGATGATCCAGAAAGAATGCGCAGCGATCCGATCGTCCTTCAGAGAAGAAGACAACACTTACCGCTGTAGGAATGTGGCCAAGCTGCTGTACATGCACATGTTGGGTTATCCGGCACATTTCGGGCAGCTGGAATGTCTGAAGCTGATCGCATCACAGAAGTTCACTGACAAGAGAATAGGGTACTTGGGGGCCATGTTGCTGTTGGACGAGAGGCAGGACGTCCATTTActaatgacaaactgcattaaGAACGATCTAAATCACAGTACGCAGTACGTCCAGGGACTGGCCTTGTGCACCCTCGGGTGTATGGGTTCATCGGAAATGTGTCGTGACCTGGCTGGGGAAGTGGAGAAGCTCCTCAAAACGTCAAATTCCTACTTGAGGAAAAAGGCAGCGCTGTGTGCGGTTCACGTCATTCGGAAGGTTCCAGAGTTGATGGAGATGTTTCTGCCGGCGACAAAAAACCTGCTGAGCGAGAAGAATCACGGAGTTCTGCACACGTCTGTCGTTTTACTCACTGAAATGTGTGAACGAAGTCCCGACATGCTCACTCACTTCAGAAAGctgGTTCCTCAGCTGGTGCGAATCCTGAAGAACCTGATCATGTCTGGATACTCTCCTGAGCACGATGTGTCTGGCATCAGCGATCCCTTCCTGCAgGTGCGGATATTGAGGCTACTGAGAATTCTGGGAAAGGGCGACGATGACTCTAGTGAAGCTATGAATGACATTCTTGCACAGGTTGCGACAAACACAGAGACGAGTAAAAATGTAGGCAATGCAATCTTGTATGAAACTGTTCTGACTATTATGGACATCAAATCAGAGAGTGGATTAAGGGTATTAGCTATTAATATCCTGGGACGTTTTCTTCTCAACAATGACAAAAACATCAGATATGTGGCACTGACATCTTTACTGAAAACAGTGCAGACAGACCACAACGCAGTTCAGCGGCATCGGAGTACCATTGTGGACTGTCTGAAAGACCTGGACGTCTccatcaaaagACGTGCGATGGAGCTGAGTTTCGCCCTCGTCAATGGAAATAACATCCGTGGGATGATGAAGGAGCTGCTGTACTTCCTGGACTCGTGCGACCCGGAGTTCAAAGCCGACTGCGCGTCGGGGGTCTTCCTGGCTGCTGAGAAgTATGCACCCTCCAAAAGATGGCACATAGACACCATTATGAGGGTGTTAACTACGGCGGGGAGTTACGTCCGAGACGATTCTGTCCCGAACCTCATTCAGCTCATCACCAACAGTGTGGAGATGCATGCTTACACCGTGCAGAGACTCTACAAAGCCCTGCTGGACGACATCTCCCAGcAACCTCTGGTGCAGGTGGCGTCCTGGTGCATAGGAGAGTACGGAGACCTGCTGGTGTCGGGCCagtgtgaggaggaggagccCATTCAAGTTACAGAGGATGAGGTCTTGGATGTTTTGGAAGGTCTTCTGGTCTCCAACTTGTCCACCCCTGTGACCCGAGGTTACTCGCTGACTGCCATCATGAAGCTGTCCACTCGTTTCAGTGGTGTGAATCGAATAAAGAAAGTGGTGTCCATATACGGCAGCAGCATAGACGTGGAGTTACAGCAGAGAGCTGTGGAGTACAATGCACTTTTCAAGAAATACGATCACATGAGGCCGGCCTTATTAGAGCGAATGCCCATTATGGAGAAAACGGCCACTAACGGCCCGACAGAGATCGTACAGACCAACGGAGAGACGGAACCTTCTGCACTGGACACGAAACACCCGCCCAGCGTCGCTCAGACAAATCAGGCGAATGATTTGTTAGACTTGCTCGGAGGTAACGACGTCCCGGTGATCCAAACGACTCTGCCCACTAAACCTGCCTCAGCCGGCGGAGAGCTGCTCGACCTCCTTggggatctctctctctctgGAGGTCCGACCCCTGCCCCTGCTCCGTCTGTGCCCATATCCCAGCCGCCGTTCCTCCTGGACGGTCTCTCCTCACAGCCGCTCTTCAACGACACCGCAGCAGctaTTCCTCCGATGACCGCGTACAACAAGAACGGATTGAAAATCGAGTTCACCTTTGAGAGGTCCAACCCGAACCCTAACATTTCAGTCATCACCATCCACGCCTCCAACTCTACCGACACAGACATGGCCGACTTTGTGTTCCAGGCTGCAGTACCAAAGACATTCCAGCTGCAGCTCCTCTCCCCCAGCAGTAATATTATCCCAGCACTCAACCAGGGAAGCGTCACACAAGTCATCAGGGTTCTTAACCCACAGAAGCAACAGCTGCGAATGCGCATCAAGCTGACGTACAACTACAAAGGCTCTCCTGTTCAAGACATGGCCGAGGTCAACAACTTTCCCCCTCAGTCCTGGCAGTGAATGTGCCGTTCACTCGATCTGTAACACCcaccgcgcacacacacacacacacacacacacacacacacacacacacaccccaatcAAGGGAACTGTGAGCAGTGGAGCGCCCTTACTCATCCCTGACTGGCCCCCTGTGACATACCTGCACATCGCTGCCCTGGGGTTGCATGGGAAACAGAGGAAtcttcccaacacacacacacacacacacacacacacacacacacacacacacacacatgcgagATGGTATGAAAACCATGACTATGATGACAATGATAaaccctttccttttttttttttgttttgttttgtttcgttttgttttgtttgtcttttctgtctttctgcttCAGAATTAGCACATCACTTCTATTACCGGCTCGCACACAGGTACTCGGTttagtgcgcacacacacgcgcacacacacacacgcacgcgcacacgcacacacaccctaaGCTGGCCCTGACCCACTTTCTGTCTGTACATGGAACATACCACTCGATGGTCACTCTGGAGAGGAGCTCAATTGGAATGAGTGTTTGATTTGTCTtgattttcttgtttttaatcttaataggcttaatttttaaaaaatgaaagattaacaaaaaaaaggttaaggGTAAATCTGAgctttaagcttt

Function

symbol description
ap1g1 Predicted to enable clathrin adaptor activity. Acts upstream of or within several processes, including axis elongation; pectoral fin development; and vasculature development. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of AP-1 adaptor complex. Is expressed in liver and midbrain hindbrain boundary. Orthologous to human AP1G1 (adaptor related protein complex 1 subunit gamma 1).

NR:

description
PREDICTED: AP-1 complex subunit gamma-1 isoform X1

GO: NA

KEGG:

id description
K12391 AP1G1; AP-1 complex subunit gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930780.2 True 3616 mRNA 0.49 24 2079340 2111029
XM_026930781.2 False 3606 mRNA 0.49 23 2079341 2111029

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 36152 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 304294 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 412078 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 927584 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 948350 1064081 ~ 1130990 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 14757 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 73423 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 125429 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 496714 2607743 ~ 2766656 (+)
LOC113536638 pmfbp1 coding downstream 688366 2799395 ~ 2971692 (+)
G174545 NA non-coding upstream 7022 2071788 ~ 2072318 (+)
G174542 NA non-coding upstream 11508 2067598 ~ 2067832 (+)
G174539 NA non-coding upstream 15608 2063522 ~ 2063732 (+)
G174537 NA non-coding upstream 17040 2062060 ~ 2062300 (+)
G174529 NA non-coding upstream 28361 2043990 ~ 2050979 (+)
G174531 NA non-coding downstream 2929 2113958 ~ 2114602 (+)
G174556 NA non-coding downstream 69315 2180344 ~ 2182324 (+)
G174566 NA non-coding downstream 161662 2272691 ~ 2273373 (+)
G174568 NA non-coding downstream 165682 2276711 ~ 2276922 (+)
G174572 NA non-coding downstream 190603 2301632 ~ 2357372 (+)
G174546 NA other upstream 713 2078077 ~ 2078627 (+)
G174536 NA other upstream 19057 2058970 ~ 2060283 (+)
G173898 NA other upstream 714409 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1256617 790374 ~ 822723 (+)
G173819 NA other upstream 1336630 742021 ~ 742710 (+)
pth1b NA other downstream 1534714 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1536326 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2170215 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2502377 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 2545576 4656605 ~ 4661136 (+)

Expression


Co-expression Network