atxn1l (atxn1l)


Basic Information

Item Value
gene id atxn1l
gene name atxn1l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2038568 ~ 2043188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930782.2
TTTCGTCGCTGGCCTCTGAAATGGGCACTAATCATCAGCCCTGATTTCACCGTTGATTTATGACACTGACTCACCAAAAGCCGAAAGCTCGAACGTAGGCAACATCATGACATGCCCGGgtAACGTGATGGAAGAGCTGAGCGAGAGGTTCCCAGAGCTGATTGCAGTGGTGCCGTGTTTGTGGCTGTCAGGCCACGCCTCTCACTAACATCGTCCACGTGTAATCCAGAGCAGCATGAAGCCAGCTCACGAGCGCAATCAGGAGTGCCTCCCTCCAAAGAAGCGGGACCTTCCGGTTAACAATGCTTCCACCGTTCCTAGcaacagcagcagtagcagcagcagcagcagtaatactggaggaggaggaggaggtggaggaggagacGAAGCGACGACGTCGTCGTCACAGAGCTCCGGAGCGAGTGGAGAAGCTCAGGGTGGAAGCGGAGGCGGCGAATGGGTCCGCACTCAACCTAACCTGCATTACGGAGTGGAGGGGCCGGAGAGCATCGCCCCGGGATTACCTGTGGATCAGTACAGCATGCTGTATAAAGTAGCCGTTCCTTCGGTCACCTACTCGCCCACCAGCCTCCACCCCGTGCTGGGCCACATCTCTCCAGCCTACACGGTTCCCTCGCCGCTCCTCCAGCACACCGGCATCCATTACCCTTCCCTCGGCTACGCTCCCATCCCGCAGTTCGTCAGCCCTCCGTACGCCGCCGCCGTTCCCTACGCAGTCCCTCCGGGATTCGTCCCCAGCCCCTTGATACCGGCGCAGTCTCACCTGGTGCCCTATCCATCCGTCATCCAGGAAGGCGTGGTCTCGTCCCCGCCTCAGCAGCAAGTTTCGGCTCACGCCTACGCCAAGGTGGCGGCTACAGGCGGCGTCCCGTTGGTGCTGGCGTCCGAGCAGGCGGCGGcctcttcttcatcctcttcctcctcttcgcAGCAGCCTCTAGGCGCCATCGGGATGATTCCCACAGCAGAGCGCGTCCCCATCTTCTACCACGCGTCGGCCAGCGACCGAGCCGTGCCGCCTCAGAGTGGCTCGATGGAGCAGGACCGAGAGGTGAACGGAGGAGATCGGGAAAACGGCAGAGAGAGCCTGCAAGACATGGTGTACGTGGCGAGAAATCTAGCGGCGCGGCCGCAGCAAGGCACAGCCATGGAGCTGCACATGGACCGGAAGATCTGCAGGCAGGAAGGAAGAGCGTCGCCCGGCCAGCGCAGCACCCCGGACACGGACCTGGAGGTCCAGCAAGTGGTGGGGCGTCTGGCGTCGCCGGGCCGTGGCGTGAGTCGCAGGGAGGGAGCGTACGGCTCGTCTCAGAGTAGCAGAGAGGTTCATGGGGAGAGCAGGACGGCGTACACGTCACACCCCGCCAGCCAGCTGGACCCCCGAGCCCCGCCTCATCCGCAGCAGACAGCACAGCCTGGTCATACGGTGATCCTGCCGAACGGGCAGCCGGTTCTCATGCCCCTGGACtaccatcctcatcctcatcctcagaCTAATAACGACGCTGCAGCTGAAACACCACAACACAAAATCTCAGACGCGTCAGGCGTGGCTGAGCGGGTGGTAGCGGTGGAGCTGCCCGCCGTCCCGACTGTCCCCGCCGTGCCTCCGCCGTCGCACTTCACCAAGGGCGCCATCATCCAGTTAGCAACAGGTGAGCTGAAGCGCGTGGAGGATCTGCAGACGCAGGATTTCGTACGCAGCGCCGAAGCGAGCACGGGGCTAAAGATCGACTCGAGCATGGTGGTGGACGTACGCGCTAGCTCACAGAGGCCCGGCCTGGTCGCGCTACGCTTCGCCGTCGGCGAGCGCCAGAGCAAAGTGAGCATTGACGTTCCTCCTGAGCATCCGTTCTTCGTCTTCGGTCAGGGCTGGTCATCCTGCAGCCCGGAACGCACCGCCCAGCTCTACGGCCTCACCTGCCACCACCTCCAAGTGGGCGACGTCTGCGTATCCATCACCCTTCAGCAGCATTCGGCGCCCCACCAAAAGCCGCCGTCGATTTCCCAGCAGCCGCAGCAACCGACACACAGCAGGACTTCCACCAAAGCCAACTCAACATCAGGAGCCTCCTCCAGCCAGCCTATGGGACCTCCGGCGCCCCAGAACCCGCGGCCTCAGGGTCAGCTCAGGATGGAGCGCGTTCACCGAGAGCGGGCCGACAAGGACGAGCCCTTAAAGCTGAGCGCATCGGGACACGGAGACGTGCCCTCCAGACCCGACAGGACTTCGGCAGAGCACACGCGCAGCCAGAGCAGTTATTATTTGCACACCGAGGCCCATGGGCCCTCACAGAGGCGTTGGTCCACCCCTGGTTTCCAAAGATACCCCGTcaagagggaggagggaggccTAGCCGCGCCGCCGGGCTCCTCTCGGCCCTCGTTCATCCCTCAGGAGGTCAAACTATCCATCGAGGGGCGCTCCAACGCCGGGAAGTAGCAGCAGACGCAGGACGCAATGGCAGGAGGGGAGGAAAGTGTCAGAAATGCGTGGGGgatgtgaaaagaga

Function

symbol description
atxn1l Predicted to enable DNA binding activity and RNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Located in cytoplasm. Is expressed in cerebellum. Orthologous to human ATXN1L (ataxin 1 like).

NR:

description
PREDICTED: ataxin-1-like

GO: NA

KEGG:

id description
K23616 ATXN1_1L; ataxin 1/1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930782.2 True 2537 mRNA 0.63 3 2038568 2043188

Neighbor

gene id symbol gene type direction distance location
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 263522 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 371306 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 886812 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 907578 1064081 ~ 1130990 (+)
fbxo22 fbxo22 coding upstream 979983 1049267 ~ 1058585 (+)
ap1g1 ap1g1,LOC106587331 coding downstream 36152 2079340 ~ 2111029 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 82598 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 141264 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 193270 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 564555 2607743 ~ 2766656 (+)
G174479 NA non-coding upstream 17561 2019817 ~ 2021007 (+)
G174477 NA non-coding upstream 96668 1936833 ~ 1941900 (+)
G174484 NA non-coding upstream 103334 1935009 ~ 1935234 (+)
G174474 NA non-coding upstream 130018 1905533 ~ 1908550 (+)
G174437 NA non-coding upstream 133742 1902915 ~ 1904826 (+)
G174529 NA non-coding downstream 802 2043990 ~ 2050979 (+)
G174537 NA non-coding downstream 18872 2062060 ~ 2062300 (+)
G174539 NA non-coding downstream 20334 2063522 ~ 2063732 (+)
G174542 NA non-coding downstream 24410 2067598 ~ 2067832 (+)
G174545 NA non-coding downstream 28600 2071788 ~ 2072318 (+)
G173898 NA other upstream 673637 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1215845 790374 ~ 822723 (+)
G173819 NA other upstream 1295858 742021 ~ 742710 (+)
G173748 NA other upstream 1468242 568813 ~ 570326 (+)
G174536 NA other downstream 15782 2058970 ~ 2060283 (+)
G174546 NA other downstream 34889 2078077 ~ 2078627 (+)
pth1b NA other downstream 1602555 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1604167 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2238056 4281244 ~ 4299367 (+)

Expression


Co-expression Network