LOC113536680 (LOC108270653)



Basic Information


Item Value
gene id LOC113536680
gene name LOC108270653
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7009298 ~ 7011515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026930786.2
CACATGGCCACTCGGGTACGGAGTTACACAGCCTAGCATAACTCGTCTCATTTCTTTTGCACTGTCGTCGGACAAAGATACATTTCCAGGTTTGTGAAGACACTTGGGATTGTTCATAACCTTATGCTGATTTACTGGAGATTTTGAAAATTGCATGGAATGAACTGTATGGAAGAGCAGACACTATAGGAACCCGCTCACTACAGACCTTGGATCCTCTGAAGGAATTCATGTGGTAAATGTTCCATATGCTTCCGAATGATTTGAACTAAGACAGTCAATGTAGTGGATTGTGATGTAGTGAACTAAGGTCTGAATCAGCTACGATTAGAGGCAGAGCGCTCAGCCATTTTGAAGGGTTTTGTTTGTGACAGTTTGTGAGTCACGTACTCCAAAATAGAGACGGAAATACTTTACGTGCCCACGAGGAAGAGCTAGCACTCCGAGCATCTGGAGGGTGCAAGTTTTACAGAAACACCCACTAACAGCAACAGACAACAGGAagccagaggtcaccatcactgGAAGTGCCCACCATCACCTGGACAACCTGACATAACTTGTACATAGTGGTCTAAAATAATCAAAGTCACAACAGAGTTTGAAATCTACAGAATCCGAGTGGCAGCTGAGGAAAGAATAACTCCAGTATGAACCCCCAGGGTGGCCATTATTTAAACAAGACAGCTGTGCTGTCCCCTCTGGGTGCTGTCCGTTTAACTGAACTTGCTCTCGGCTGTACCGTGATCTCTTTAGTGGTTCACGTTGCGGGATACACTGCTGTCTATGGGATCTTCTGCATGGTATCGTGGAGCACTTGCTTTGCCCTCTCGGCAGCCATCTTCGCTCTGGACGTGACGCGTCTTCACTCATGTCTTCCTGTGTCCTGGGAGAACCTGACTGTGACCCTGGCAGCACTGTCTGCTCTGCTCTATCTCACAGCTTCCATTGTGTACCCAGTTTACTTTGTGCGCAATGAGTGCCCATATAATGATTGCGAGGTTAGAAATTTCCGGATAGCCGTAACTGTCTGTTCCTGGGCAGTGTTTGTGGCGTATATTGCTGAAGTTTCCCTGTCCCGGGCCAAACCAGCCCGAGCGGTCAGCTACATGTCCACTCCATCTGGCCTCCTGAAGGTGGTGCAGGCTTACGTCGGCTGTGCCATTTTCATCACTCTTGCTAATGGGAGTGAGTTCTGGCGTCACCCGGCAACCGTGTACTGTGTGGCAGTGTTCGTGTTTTGTTTTGCCCTGACAGCACTTGTGGTAGCACTGAGTGTGCTCGGACGCACAACCTTCCTGAGTCTGCCTCTCGACCGTTTTGTAGTGCTCTACACGTTTGCAGCAGTGCTGCTGTACGTGAGCGCTGCTGTGACCTGGCCCGTGTTCTGCTTCGACAGGAAGTACGGCACGCCACTCAGACCTCAGGGCTGTCCCGGGGGAAAGTGTGCATGGGACAGCCAGCTTGTTGTGACTGTGTTCTGCTTTCTCAACCTGGCGTTTTATATTGCAGATCTCTGCTGCTCCCAGAGAGCACGATTTGTTACACGGCAGCCACGTGTGTAACACCTACAATGTACTTGTAACCTTCCTATTTATTTCTGGATCCGAGACTGTGCCTCAAATCACCttcttatatatatttctactgTTCACACAGCAATATGAGCAAAGTACAGTAGAAGGACCATACATTTGTCTCGCAATGGACACTTTGTGCGCTGAGCTTTACATTAAATTGAAAAACTCTAGGATAGCAAACGCTTGCTTAAAGAAATATGTACatgaaaaatctattttaaacaaCTTTCCACTTCCACTTTACTTCCCCAAATGTAATCGATCAGCTAAGAGATGTCTGATAGCTGATACTTGCTTAATGGAGGTCCATATTTAAGCtacatcatttctttttttaaatatagactCTAGTAATAGAAGTGATCTAAGTAACAGAATTAGAAATAAAAGTTACAGATTAAACTATATTATGACATATTATCTGGTTGTCTAAGATGGCTGCCTCCACAATATTACAGAACCAGCTTGACAGTAAAGTTTTTCTAGATTACAGTAAGTCTCggggaaagagaaaaatattttttcactgAGCTATTTCTTTAAATCCGTTAGCTAATGCTGATGTAATGTAGCAGTCTGGTTTACATCCATGGTTCGCAACATGGGGCCCGGGATCCGCaagggtctgtgaagcatag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026930786.2 True 2218 mRNA 0.46 1 7009298 7011515

Neighbor


gene id symbol gene type direction distance location
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding downstream 13730 6988303 ~ 6995568 (-)
mafgb mafg,mafgb coding downstream 29822 6961636 ~ 6979476 (-)
si:ch73-100l22.3 LOC108271015 coding downstream 54554 6940768 ~ 6954744 (-)
mfn1b mfn1b,LOC108270971,LOC108443893,LOC107701405,LOC107661155 coding downstream 95980 6900248 ~ 6913318 (-)
shroom2b LOC108271435,LOC105905657 coding downstream 122885 6861351 ~ 6886413 (-)
aspscr1 aspscr1 coding upstream 7290 7018805 ~ 7055924 (-)
tmc6b tmc6 coding upstream 67985 7079500 ~ 7108209 (-)
tk1 tk1,LOC107713239,LOC107726782 coding upstream 139164 7150679 ~ 7154709 (-)
ogal LOC108270888,LOC108412751 coding upstream 168693 7180208 ~ 7190834 (-)
si:dkey-93h22.8 LOC108270890 coding upstream 180740 7192255 ~ 7202864 (-)
G177097 NA non-coding downstream 270690 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 420002 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 457716 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 458036 6550914 ~ 6551262 (-)
G176990 NA non-coding downstream 464228 6543999 ~ 6545070 (-)
G177374 notum non-coding upstream 47017 7058532 ~ 7059550 (-)
G177404 NA non-coding upstream 126114 7137629 ~ 7138904 (-)
LOC117598441 NA non-coding upstream 144713 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 256046 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 278370 7289885 ~ 7290092 (-)
LOC113536608 LOC108270551 other downstream 147950 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1300994 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1812480 5139610 ~ 5196818 (-)
G176307 NA other downstream 1928403 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2504969 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 468907 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 568919 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 664401 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1233134 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1235188 8246703 ~ 8246775 (-)

Expression



Co-expression Network