kbtbd13 (kbtbd13)


Basic Information

Item Value
gene id kbtbd13
gene name kbtbd13
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8532235 ~ 8534139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930787.2
AGATAGTTCTTTCACTGCAGTGAAGTACGATATGATATGCGTCTCATTGCCATCAGAAGTCTAAATGAAAATCACTGGTTGTGATGATGGAGCCTAGCAGCTGTGCTGGCTCAGAGCTAGGACTTGCTAAGATGGTTTGTCGAGCTCAAGTCTCTGAAAACACAGCCATGAGAGTGAGGCTAGCTGGCAATGTTTTCACAGTGGACAAAACCCTCCTGGAAGACAACTGCGAATACTTCCGGGCACTTTTCCAATCAGGAATGAAGGAATGCCAGCAAGAGGAAATTTGCCTTCAAGTAGTGAACGCTCGTGGCTTTCTTGTGGCACTTCAGGTGATTCACGGTGAGAGACCTATCCTTGATAGTGATGAAATTGTAGAAGCTGTAGAGTGTGCCGCCTTCCTTCAGGTGAAGCTTCTTGTTAAACATCTTGTAAACATTGTTAATTCTGATAACTGCCTCCTCATTTATCACTCAGCTGCCACTTATGGCTTATGGGAGCTGTTCAAAAGTGCAGCTTTGTTCATTTGTGATATGTACCAAGACCTCAAGGAGGATATACAGTGCTTGCCAAAGGAACTTATTGATTACATTGAATCTCTTATTCCTAGTAAATATGTTACCATTGGGACCCACTCACCCACCATTAAGCTGCTTCAGGACTTTATGAGGACAGTATGTTACCTTGATGAGGATGAGAACGACTGGAAAGTTCTCACTCACCTACCACTTAACACTAGCACCACCATGGCTGGGGTTACAGTCCTTGATAACAAGATCTTCATTGTTGGAGGTGTGTATGACATTAGCAATAAAGTTGTAGACTCTGGCTTCTGCTATGATGTGACCTCAGATACCTGGACTACATTTTCAAGCCCACAACAGCTCCGGTATAACTGTACCCTGGTGGGGCATGAAGGCTCTCTTTATGCACTTGGTGGAGAGTTTGAAAGATCCACCATGTCATCTGTAGAAAAATATAACGTGGCCACAGACACATGGAGCTTTGCTGCTCATCTTCCAAGACCTGCTACTGCTGTAGCTTGCACCAAGACCATGGGTAGGATATTCATATGTCTGTGGAAACCAAAAGATGCCACCGAGATCTACGAGTACCTAGTAGACAGGGATGAGTGGAGTCTAGTGACCACAATGATAAGACATCAAAGTTATGGGCATTGTATGGTGGCACACAGGGACAATTTGTATGTGATGAGGAACGGGCCATGCGATGACTTCTTGAGATGCATGATGGACTGTTATAACCTGACCTCAGGTCAGTGGACAGCCATGCAGGGACAGTATGAGAACAGCAAAGGAGCTTTATTCACAGCAGTGGTGAGAGGTGATTCTGTTTTTACGGTGAACCGCAGAGCGACAGTGGAGTATGCCATTGAGGACAACAAGTGGAGGACGAAAAAAGAGATGACAGGATTTCCAAGAATTGGCTCCATGTGGACTTTTCTCCTGAGACTACCAAAGAAAACCAAAGGGCCTCTGGGAAAGGAGAATTTGACAAATGGCCAAGTTTTTACTGCGTCCTCTCACGTCCTTTCAAGCTCTTCTGAGTGCTATTATTGACTACACTATAACCATTTCAGCCTATAGAGAAGTAATctatttattcaaataatagTCTTTCTGCCTTTTCATATTCCCTGGTTTAGCCAAGGCATAGTGCATGGTGCTTCTACAATATTGACTAAAATGAATTTAGCTATGTCTCTATGTACTTGATATTtttgttactgtctgtgtggagttttgcatgttctccccatgtgcTCATggttttcctctgggttctctggttccctcccacctcccaaaacatgctggtatGTGGTTTGGCTACACTAAATAGCCCCTGGAtgggaatgagtgtgtgaatgtgtatgcattgtgc

Function

symbol description
kbtbd13 Located in Z disc. Human ortholog(s) of this gene implicated in nemaline myopathy 6. Orthologous to human KBTBD13 (kelch repeat and BTB domain containing 13).

NR:

description
PREDICTED: kelch repeat and BTB domain-containing protein 13

GO: NA

KEGG:

id description
K21913 KBTBD13; kelch repeat and BTB domain-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930787.2 True 1905 mRNA 0.44 1 8532235 8534139

Neighbor

gene id symbol gene type direction distance location
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding upstream 44905 8480856 ~ 8487330 (+)
slc39a1 LOC108270705 coding upstream 54796 8472471 ~ 8477439 (+)
kif7 kif7,LOC107733953,LOC107749689 coding upstream 290110 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 334544 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 606496 7844673 ~ 7925739 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 31141 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 97684 8631823 ~ 8701565 (+)
snrpa1 snrpa1 coding downstream 177016 8711155 ~ 8717829 (+)
selenos selenos coding downstream 184388 8718527 ~ 8724082 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding downstream 193581 8727720 ~ 8782842 (+)
LOC113536702 LOC108271401 non-coding upstream 10113 8514131 ~ 8522122 (+)
G178067 NA non-coding upstream 91018 8408009 ~ 8441217 (+)
G178104 NA non-coding upstream 109635 8420187 ~ 8422600 (+)
G178046 NA non-coding upstream 219583 8310660 ~ 8312652 (+)
G178047 NA non-coding upstream 222717 8307307 ~ 8309518 (+)
G178170 NA non-coding downstream 10130 8544269 ~ 8544475 (+)
G178192 NA non-coding downstream 54681 8588820 ~ 8589555 (+)
G178260 NA non-coding downstream 273466 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 448826 8982965 ~ 8984242 (+)
G178539 NA non-coding downstream 671318 9205457 ~ 9205678 (+)
LOC113536578 NA other upstream 261485 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 284147 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 287211 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 288587 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1260915 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2276531 10810670 ~ 10850923 (+)
G179632 NA other downstream 2562014 11096153 ~ 11098811 (+)
G179643 NA other downstream 2626207 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2894474 11428613 ~ 11430897 (+)
G180121 NA other downstream 3520819 12054958 ~ 12055749 (+)

Expression


Co-expression Network