cx36.7 (LOC108270620)


Basic Information

Item Value
gene id cx36.7
gene name LOC108270620
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10482171 ~ 10483611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930793.2
GCACTTCAGAAGAGAGCTATGAAAAAGAAGCTACTGTGTTTGagtttatataatattgttagctttaattaaaatgagCGATTGATTGGATGGGAGTTGGGGTCAAAGCACAGAATCAGGAGCCTCTGTGGAGCTGATGAGGGCTAAAGATTGTTGCTAAAGGAACTTAACTGAGGCTCTTGAGCTggtttgggatttgaactcacaactcTCCTGGGGTGTGAAAAAATCTGCTGTTATTACCAAATCATTTGAGCACTGGGACTCAGGGTGGCAATGACAGAGTGGACACTGCTGAAGCGGCTCCTTGATGCCGTGCATCAGCATTCGACCCTGATAGGCCGGATCTGGCTGACGGTGATGGCAATTTTTCGGTTGCTGGTGGTTGCCGTGGCGGCTGAAGACGTGTACGCTGATGAACGtaccatgtttgtgtgtgatacACTGCAGCCAGGCTGCTCTAATGTGTGCTACGATGCCTTTGCGCCCATCTCTCAGCCACGTTTCTGGGTCTTCCATATTGTCGCCGTGTCCACACCGTcacttttcttcattctctACACCTGGCACAACCTTTCCAAGATGGCACCTGGGCAAAACACGGACGAGTGTGTGCGGAACTGTAATTCTGAAAGCTGCTCCATGACGTCTCATCATCACCCGAGAGACAAGGTGGCTGATGTTCTGGAGAAAAACATGTGCGTTTCACTACCTCGCAGCACTCtcgtccaaaaacatgcctctCTGACAAGAGGTTCCTCAGGAGTCCTGTCCAAAGCCTACGTGCTCCATGTGTGTTTCCGTGCTGCATTGGAGCTGGCATTCCTTTCCCTTCAGTGGCTGCTTTTCGGATTCTACGTCCCGGCTCGTTTCATGTGTGCCGTCCCTCCTTGTCCTCAGCGAGTGGACTGCTACGTCTCACGTCCCACGGAGAAGAGCATCTTCCTCATTTTCATGTTCTGCGTGGGTGTCTTCTGCATCTTGCTAAACTTCCTGGAGCTCAATCACCTCGGCTGGAAGAAGATCAGAAGGTCAATGCAAGTAAAGGAAGGATGGAGGAGCAGTATTTATGGAGCAATAAATGAGAACGGACGCTCTGGGACGAGCAGTACAACGTCTCTGCCTACACTGGAGCTGCTGGTGGAGAATCAACCTGAGTGGACGTGTGCAGGAAATGAGTGCTGCCCACCATtaaaacaagagaaagaaaagtctGAAAAGTCActgcagaaagagagacacaatgCAACACAAGTGCTGAGAGGAAAAACACAATCACATAAAGGAAGAGTGTCCAAACGAAGTGCTGAAGTCTGGATATAAACTGAATCCTTCTTCACTTATCCATATACCTTTCTGATTTAGACCTTGCTTTTTGGTAAGTTTTAAAAGTGAttgaccttttcttttttttaaccataacaAAACATATACTGAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930793.2 True 1440 mRNA 0.47 2 10482171 10483611

Neighbor

gene id symbol gene type direction distance location
lmnl3 LOC108270534,LOC108439631 coding upstream 2848 10460121 ~ 10479323 (+)
saxo2 saxo2 coding upstream 224593 10251725 ~ 10257578 (+)
il16 il16 coding upstream 659942 9792080 ~ 9822229 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding upstream 707717 9770774 ~ 9774454 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 727725 9625189 ~ 9754446 (+)
LOC113536420 NA coding downstream 71674 10555285 ~ 10563493 (+)
rubcn rubcn coding downstream 81648 10565259 ~ 10579393 (+)
tctex1d2 tctex1d2 coding downstream 134201 10617812 ~ 10623164 (+)
LOC113536756 LOC108271257 coding downstream 166647 10650258 ~ 10674052 (+)
LOC113536667 armc9 coding downstream 630033 11113644 ~ 11160226 (+)
G179212 NA non-coding upstream 221563 10256766 ~ 10260608 (+)
G179085 NA non-coding upstream 408154 10073818 ~ 10074017 (+)
G178839 NA non-coding upstream 574725 9824446 ~ 9907446 (+)
G178834 NA non-coding upstream 699425 9782541 ~ 9782746 (+)
G178817 NA non-coding upstream 731458 9750445 ~ 9750713 (+)
G179425 NA non-coding downstream 3086 10486697 ~ 10491773 (+)
G179426 NA non-coding downstream 8422 10492033 ~ 10492469 (+)
G179427 NA non-coding downstream 13037 10496648 ~ 10497140 (+)
G179428 NA non-coding downstream 13877 10497488 ~ 10497712 (+)
LOC113536738 NA non-coding downstream 299514 10783125 ~ 10784114 (+)
LOC113536578 NA other upstream 2211421 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2234083 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2237147 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2238523 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3210851 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 327059 10810670 ~ 10850923 (+)
G179632 NA other downstream 612542 11096153 ~ 11098811 (+)
G179643 NA other downstream 676735 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 945002 11428613 ~ 11430897 (+)
G180121 NA other downstream 1571347 12054958 ~ 12055749 (+)

Expression


Co-expression Network