si:ch1073-396h14.1 (LOC108271130)


Basic Information

Item Value
gene id si:ch1073-396h14.1
gene name LOC108271130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12992264 ~ 13024225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930798.2
CCTGTTGCAAAGTGGAGGAGGGTTGAGTAAGGCATTCTGATGCCTGCTCTTGCTCAAGGCTGAGGAGAGATTTCAGCTCTGAAAGTTTTCAGCTTGTCTCTTCCTGACCCTGCGAATGGAACTGATTATCCAGCGGGCTGTGTGGAAGGCCCGAGTAACCTCAAGTAACATGGGAGGGCCGCTTTGATTATGTCATGCTTCAAGATCAGGCTGTTTCTTGTGGGCCAATCAGAGTGGAGCAGGATATTATGGGGGTGGAGCCAAGATCAGatATTCCTGGAATAACAACGAGAAAATGTCTCACAAAAAATGGTGCTTGCTTTGGGGAAATCTGGAAATGCTGGTGGATGCAGTCTGGAGAAGATTGTGACCCTGTGGGAAATCAGCATTCACCTGCTCTCCACCTTGAGTCCGTAGTCGTTTCCTGTAGCTTGTGGAAATACATGCATTCTTTCGCGTCGCATCCGCAGACAATCACTCAAAACTGAGAAGTCAACATGGCCACTGAAGCTCTGAACGCTCTGAAGATCTGTGTGGTGATCATTTACCTGGCTTTAACGGGACTCTGTGCAGAGGACTTCAGATATATCCGGCAGTTCCTAAGGTACTACGAGAGCCTCTCTTATGACAGAACCACATTACTGCAGCAGCATCAGCGAGTAAGGCGTCATCTCGATCCAGAAACCCAGGTGCTGCATCTGGACTTAGAAGCTTTTCAGAAGGTTTTCCGTTTACGACTCAAGCCAGACTCTGATGGGTTTGCAGAAGATTTCAACGTCCTGTCCAGCAACCAGTCATTGCAAGGCGACCTCTCTCACATATATTCAGGAGTGCTGGAAGACGAGGTCGGATCTTCATGCCAGGGGTCAGTCCTCGATGGCCAGTTTGAAGGCTCCATCAAAACCTCCAATGGGACCTTCTACATAGAATCCATGCAGAGATACACATCTGAGTCAACAGAAAATCACTCTATCATCTACCATGAGGACGATATCGATGACATTCCCATGGAAGGGGGCCGTGCTGGATTCTGTGGTACGGACCGGCTGCAGAGTCTCATCCAAAGCCTCAGACAGGATGAACCAGTGCCCAGGTCAAAACGTACAGTAGACCAGTCCAAGACTACCTGTCTCCTCCATCTGCATGTGGACTATTTGTTTTATCAGCGGTTTGGCAGCATCGAGGCTGTCGTTGCCCAGGTTGCCTCGTACATGAAAGCAGTAAACAATATATTCCACAAGGCTGAGTTTGATGGGATCGACGTAATTGACTTCAAGGTGAAATCGATGAGTTTTGTTTTAGAAGAAAACCCAGATGACCCGCTGCAGGAGACTTTCATTGGCCCCGAGAAGCTGCTGAGTCTTTATTCAGAGACGAACTGGGGAAACTACTGCCTGTCCTACCTGCTGACCAGCCGCGACTTCAGCGGCATCCTTGGCCTGGCCTGGGAGGGGAAACCAGATAACTGGGGTGGGATCTGTTCCAAACCCATACACAATCGGGATGGTCAGTTGTCCAGCCTGAACACTGGTCTGATCACCCTGAAGAACTTCGGACGTTACCTTCTGCCCAAGTTCGTCCAGCTGACCTTCGCTCATGAGCTTGGCCACAGCGTGGGAGCTCCTCATGATGAAGGCTCGGattgtggtggtctgggaatcACTGATGGGAAAGGACACTTCCTGATGTTCCCACATGCTGCAGACGAGGTGAAGGAGAACAGCGACCGTTTCTCGCCGTGTAGCCTCCGGCACATGAGCCGTTTGCTGAAGATCAAGAAGGACAAATGTTTTGTGGTCAGCGATCAGCCAATCTGTGGAAACCGGATTTTGGAGAAAGGAGAATGTGATGTAGGACTCAACGCAAGTGATCCGTGTTGCTACAGTTCAAGGGAGCCAATAGGAATTCAGTGTCGGCTAAAACCTAACCAACAGTGCAGTCCTAGCCAGGGTCTGTGCTGCAGCTCTGGTTGTGTCTTTAAAACTTCTGGACTGCTGTGTGAGGAAGACTCTGAGTGTCGGATGAAAAGCATGTGCACAGGAACCTCTGCCACATGTCCTCAACCTGCTGCCAAGCCAAACATGACATTGTGCAGTCTGGGCACACGGGTTTGTCTTAACGGGGAATGTTCGCGCTCCCTGTGTGTCCTACACAGCCTGGAGCAGTGTGACTGCCCAGGggagaacaagaaagaaaaatgtcacaTGTGCTGTCAGCAGAGAGGAAACCCCAACACATGCGCGAGCACCACTTCCTCAGTGCTCTCAATGTACTTTAAGGGACAGCGGGTGGCGTTGGTGCCTGGATCTCCATGCCACAAAAACCAGGGCTACTGCGATCACTTCCAGACATGTCGTCTGTTGGACGCGGATGGCCCCATTGCCAGACTGAAAAACTCCTTCCTGAACCTGCGCGAGTTTGATGACGTAGCAGACTGGATGAagGCCCACTGGTGGGCGATCCTGCTGGGAATCCTGGGAGTCTCGGCCGTAATGGCTGgcactgtctgtctgtttggaCATACACTTGAGAGTGTCGACAGAGAAGAGACGACACGTTAACTGAGCTGGAAATATGTCTGCTGGACAATATAAACACTAATACAGATACACTGTTGTTATATATTTGACAGTATATCTGAGTTTCTGTGCACTGTGCTCACACTCATTATAGGCACTGATTTTTAATCTCCGTAACTCTCACTATGCATTGACTAAATGTAGCCTATGTATGCAactcacattttatttctgtgattCTCCTTCCCTctactttttgtttgtgtgttaaaagCAAGCTAGCAATTTTTTCAGCAATTCAAGTTAGTTACTccttccataacattaaataaacacatcctCACAGGAAACATCACCATACCAATgactacacacattttttagtccatttatgtggagtgtgtAGGTTTCTAACAATGTAAGTTGTACCTATAGaacaataacgtatcagaacgagtgcattaatataatcctgtgatttgcaaCTGCactattatcagagctgctgttatagaaaattttaGCAAAGCAGGGTAAGTGCAACAAGTTTAAACCAGAGGTAAAGCCTAGCTTTACCTAgctaaaagcaaaataaaacagaaggaGCAAATTAGAGACATAGAATAGACATTTGCAaatgccaagtgtaaagtttcaAAGCTAGGTAGCTAATGTTTGCTAGGTAGTTTAGCACAATGTTTTAAATAGATAATCCCTAAAACTTACTTTCTTCATGTTTCTTTCTGTGATGTTCAGAGCTGTGAATCATTAATTCTGCCACTGTTCATTTTAGTAGCTTTTTATTGTGCAATCTGTTATAGTTCGTATTGTTTAATCTCATATCTTATACATGtatacatcatttttatttcattatttattgttattcattttgacttttttttttttaaatctattagataaaatttttaaaaacaatattttaaaaacatttttacagaatttttttcagtttctctgaactgaactgaaatggtTGTTTTAACGAACACATTTCTATCAGAATCTTTTGTTAGAATATTTgacacttttaaatatttaaaatgtatatttgcCAATGAAAGACCATTGTTTTACCAGTGTTATAGTACTCAGTAGTTGCACACTATTTGAAAATGCAATACAATGTGCTATTACTGTAAacacattactgtaaatattgagTGCAGTAAGATCCTGTAAATTTATAAGATCATTTTTAGAAAGACTCAGGGTGAGAGgtgtagacagagagaaaaaagcctCTAAGGGTCAAGAAATATCAGATGTGAATATTCCTTATAAACTTTGGTAATCTCATGAACTTGTACTGAGTGTAAAAACTGTTTGTCTTTGTGGAGTTTGTGCTGTATTCAGCAGCCTGTGTGTCAGATTGCCCTCCTGATGTTATCACTGCAGAATACTGAGTACAGCTATATAAATAACTCAGTATTTAAAAGAGACGGAGCAGCGTTCAGGGCTGACTCATCTGTGAGTTCTGcattaacactgacacaaaacaccTGACtgcaaatgttcatttttatgatTCTGTATTCCAGATAAATTTTAAACCA

Function

NR:

description
disintegrin and metalloproteinase domain-containing protein 10-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006509 membrane protein ectodomain proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930798.2 True 4096 mRNA 0.44 19 12992264 13024225

Neighbor

gene id symbol gene type direction distance location
safb safb2,LOC108424984,LOC107757477,LOC107653619 coding upstream 1847 12976518 ~ 12990417 (+)
malt2 LOC108270956,LOC108414270 coding upstream 17465 12950398 ~ 12974799 (+)
mrpl54 mrpl54 coding upstream 43457 12947040 ~ 12948807 (+)
eps15l1a eps15l1 coding upstream 154416 12804314 ~ 12837848 (+)
zbtb37 zbtb37 coding upstream 259572 12722857 ~ 12732692 (+)
tpm4a tpm4,tpm4a,LOC108424981,LOC103036175,LOC107561904,LOC107665514,LOC107757474,LOC107715082 coding downstream 41763 13065988 ~ 13085931 (+)
hsh2d NA coding downstream 64048 13088273 ~ 13094963 (+)
LOC117598427 NA coding downstream 253733 13277958 ~ 13280512 (+)
cep19 cep19 coding downstream 284216 13308441 ~ 13313447 (+)
impact impact coding downstream 295718 13319943 ~ 13368258 (+)
G180534 NA non-coding upstream 141085 12850960 ~ 12851179 (+)
G180516 NA non-coding upstream 150982 12836868 ~ 12841282 (+)
G180268 NA non-coding upstream 309701 12654422 ~ 12682563 (+)
G180267 NA non-coding upstream 338049 12653796 ~ 12654215 (+)
G180246 NA non-coding upstream 494613 12496731 ~ 12497651 (+)
G180695 NA non-coding downstream 111912 13136137 ~ 13203148 (+)
G180738 NA non-coding downstream 177646 13201871 ~ 13285070 (+)
G180833 NA non-coding downstream 275055 13299280 ~ 13302297 (+)
G180838 NA non-coding downstream 377662 13401887 ~ 13406255 (+)
G180926 NA non-coding downstream 423720 13447945 ~ 13448184 (+)
LOC117598398 NA other upstream 390200 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 430483 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 658583 12328052 ~ 12333681 (+)
G180121 NA other upstream 936515 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1561367 11428613 ~ 11430897 (+)
ankmy1 ankmy1 other downstream 72148 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 212252 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 226145 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 231832 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 233783 13258008 ~ 13258076 (+)

Expression


Co-expression Network