opn6a (LOC108271086)


Basic Information

Item Value
gene id opn6a
gene name LOC108271086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7282097 ~ 7289517 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930801.2
CTACCACAGGTGTGTAACTGTTTAGGCATGCTAGTTAGTAACCTTGGATAATATGTGGGTTTGGACCTAACCCTCCAGTCTCTCACTGTGGGAACAGCAGAAGGGGGTCATACTAGCTTATAACCAGAGCACTGAAGCCTAAGGAGCTTTAGTCATGTCCTCTACCAGAGCTCTGGAGGTGGTGAACATCCCGTGGAGGAACAACAACTTCAGCCTGCTGAGTAAAGATGCGCCGCTATCTGACCAGGGAGACACAATCATTGGAGTTTACCTGCTGCTGCTCGGTTGGCTGTCATGGTTTGGAAACAGTATAGTGATCTTTGTCCTGTTTAAGCAGAGGGTGACTCTGCAACCCACAGATTACCTCACTCTTAACCTGGCCATATCGGACGCCAGCATCTCAGTGTTCGGATACTCCCGCGGCATCCTCGAGATCTTCAACGTGTTTCAGGATAATGGATACCTCATCACCTCAGTGTGGACCTGCCAGGTGGACGGCTTCTTTACTCTCCTCTTTGGCCTGGGTAGCATTACCACGTTAAGTGCCATCAGTGTCACCCGATACATAAAGGGATGTCACCCAAGCAAAGCTCACTGCATCACAACCACCACTGTAGGCATGAGTATCCTGTTTATATGGATTTCAGCTGTATTCTGGTCTACAGCTCCACTGCTGGGCTGGGGAAGTTACACAGATCGAGGGTATGGTACCTGTGAGATTGACTGGGCCAAAGCGAATTACTCCACCATCCACAAATCCTACATCATCACCATCCTGatcctttgtttctttgttcctGTATTGATCATGCTGTTCTGCTACGTGTCCATCATCAACACTGTGAAGAGAGGCAATGCCATGTCAGCAGACGGAGACTTGACTGACCGACAGAGAAAGATTGAGAGAGATGTCACCATAgTTTCAATAGTCGTCTGCACAGCATTCATCCTGGCTTGGTCTCCGTATGCCGTGGTGTCCATTTGGTCCGCATGTGGCTTTCATGTACCCAGTCTGACCAGCATCTTCACCCGGCTCTTTGCCAAGTCTGCAAGCTTCTACAACCCACTCATCTACTTTGGCCTCAGCTCAAAATTTCGCAAAGATGTTGCTGTGCTGCTGCCTTGCACCCGACATCGCAATGATGCAGTCAAACTCAAACGCTACACACACAAGGCCAAAGGAGATGAGCATCACAGGTACAGAGCTGAGGGACAGGATGAGTGCATTCTTGCTTACCAAGAGGCCAAGAAGGAGCTCCAGGCAGGAGAGGAGTCTGTAAACACTGTGCCCAGCCCTCAGTCCAGTACGTGCAGCAACCCTTGCATTCCTCCTCCACTCAGCAAGCAGGTGCATTTCATTCAGATACCCCAAACATCTGAAACCCTTGAGTACGAGTCTGACAGACTGTAGAATGTAGTTAATCAATCTGTAACTATTCcgttttgaattttaaaacatacaaaaaactTGACTAGTAGAACTGAAAAGCTATTTTTGTATATGAACTGTACGTAactgatgaaaaaatgaaaattaaaaga

Function

NR:

description
PREDICTED: opsin-5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930801.2 True 1542 mRNA 0.48 6 7282097 7289517

Neighbor

gene id symbol gene type direction distance location
eif4a3 eif4a3 coding upstream 2715 7272843 ~ 7279382 (+)
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 15768 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 34922 7239467 ~ 7247175 (+)
ldb1b ldb1,LOC108444470,LOC108270891,LOC103353370,LOC103150493,LOC107702035,LOC104963201,LOC101479469,LOC107700700,LOC107567630,LOC107564569,LOC104922276 coding upstream 45002 7206539 ~ 7237095 (+)
cant1b cant1 coding upstream 102334 7166588 ~ 7179763 (+)
map1lc3c map1lc3c,LOC107702025 coding downstream 67402 7356919 ~ 7361930 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 194726 7484243 ~ 7492243 (+)
tbce tbce coding downstream 211561 7501078 ~ 7513789 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 263456 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 312709 7602226 ~ 7602297 (+)
G177274 NA non-coding upstream 2330 7279563 ~ 7279767 (+)
G177268 NA non-coding upstream 9559 7271515 ~ 7272538 (+)
G177233 NA non-coding upstream 126753 7155121 ~ 7155344 (+)
G177166 NA non-coding upstream 320558 6960487 ~ 6961539 (+)
G177180 NA non-coding upstream 321890 6953643 ~ 6960207 (+)
G177271 NA non-coding downstream 4483 7294000 ~ 7344522 (+)
G177302 NA non-coding downstream 48908 7338425 ~ 7343270 (+)
G177487 NA non-coding downstream 120568 7410085 ~ 7410291 (+)
G177497 irf2bp2,LOC103039790,LOC108430070 non-coding downstream 144620 7434137 ~ 7436825 (+)
G177498 NA non-coding downstream 147642 7437159 ~ 7437427 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 10777 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 149629 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2620961 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2636899 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2982730 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 953838 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 955435 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 958499 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 963904 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3521153 10810670 ~ 10850923 (+)

Expression


Co-expression Network