psmd7 (psmd7,LOC107584693,LOC107659147,LOC107553010)


Basic Information

Item Value
gene id psmd7
gene name psmd7,LOC107584693,LOC107659147,LOC107553010
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3226648 ~ 3233940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930803.2
agaaaccgGAAGCGGAAGTACAGCAGCGTTCCCCCTGATTTAACGCTCGCTATTGAGGAAAGCGCTTCAgtcatttttgtaaataaatttttttttgtattgagGTGCTCAAAATGCCGGATTTGGCGGTAGAAAAAGTTGTTGTCCATCCCTTGGTCCTGCTGAGTGTTGTAGATCATTTCAACAGAATTGGAAAAGTTGGAAGCCAGAAACGAGTCGTAGGTGTGCTGCTCGGCTCGTGGCAGAAAAAGATTCTTGATGTGTCCAACAGCTTTGCAgTACCTTTTGATGAAGACGATAAGGACGACTCTGTGTGGTTCCTGGACCATGACTACCTGGAGAATATGTATGGAATGTTCAAGAAAGTCAATGccagagAAAGAATAGTCGGTTGGTACCACACCGGTCCAAAACTGCACAAGAACGATATTGCAATCAACGAGCTCATGAAGCAGTACTGCGCAAACTCGgtTTTGGTCATTATTGATGTGAAACCCAAAGACTTGGGCCTCCCAACTGAAGCCTACATCTCTGTGGAGGAAGTGCACGACGATGGAACTCCGACGTCAAAAACGTTCGAGCACGTTACCAGTGAGATTGGAGCTGAAGAGGCCGAGGAAGTCGGTGTGGAGCATTTGCTTCGAGACATCAAGGACACCACTGTAGGCACTCTGTCTCAGCGCATCACCAATCAGGTCCACGGTCTAAAAGGCCTCAACTCCAAGCTGTTAGACATCAAGAGCTACCTGGAGAAGGTCGCCACAGGAAAGCTGCCCATCAACCATCAGATCATCTACCAGCTGCAGGACGTGTTCAATTTGTTACCAGACGTCAACCTGCAGGAGTTCATCAAGGCCTTCTATCTCAAGACCAACGACCAGATGCTGGTGGTCTACCTGGCCTCGCTCATCCGCTCCGTGGTGGCGCTCCACAACCTCATCAACAACAAGATCGCAAACCGCGACGCCGAGAAGAAAGAGGGCCAGGAGAAGGACGACagcaagaaagagaagaaagaagacaaGGACAAGGACAAAGACAAGGAGAAGGATAAGGACAAGGGCGACTCTGCAGCGAAGAAAGACgacaaaaaggaaaagaaatgaacTTTAAATCCTGACATGGACTGACACCATCTTGGCTAAAATGAGGATGTTTGGGTTTCTCCTCTTTTCCTGCAGGTTTAGTCAAGTCTCCGCTCTCTCTTTTGATAGAGAATGTATCATTTTGCGTTTTCGTTTAAGCCGTTTAAAGGAGACTTTTTGGTTTTTGTATCCATATTTGCACCCATCTAGTATCACTGTTAAAAAGTACAATGCCCAAAACCAGGTCTGTGTACTCGTATTTTATTGATAATATCGagaatttacacattttttgttcACTACATGCATAGAGTAATGTGCATAATCTTGCAAAGAGCATATTCATTAAACATAACTCCTGAGGAACCTTATTTCATCCATTTTTAGTCTTGAAATTTCAAGAAACTCAAAAAGCAGTAAGCCacataaataaactataatagatg

Function

symbol description
psmd7 Predicted to enable isopeptidase activity and metallopeptidase activity. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be part of proteasome complex. Orthologous to human PSMD7 (proteasome 26S subunit, non-ATPase 7).

NR:

description
26S proteasome non-ATPase regulatory subunit 7

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03038 PSMD7, RPN8; 26S proteasome regulatory subunit N8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930803.2 True 1531 mRNA 0.44 7 3226648 3233940

Neighbor

gene id symbol gene type direction distance location
LOC113536638 pmfbp1 coding upstream 254956 2799395 ~ 2971692 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding upstream 459992 2607743 ~ 2766656 (+)
crispld2 crispld2 coding upstream 960893 2236458 ~ 2265755 (+)
usp10 usp10 coding upstream 1002282 2184452 ~ 2224366 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding upstream 1053640 2125786 ~ 2173008 (+)
znf143a LOC108271103 coding downstream 20216 3254156 ~ 3263298 (+)
LOC113536476 LOC108271228 coding downstream 49170 3283110 ~ 3352779 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding downstream 331174 3565114 ~ 3572263 (+)
dkk3a LOC108270596 coding downstream 678844 3912784 ~ 3922969 (+)
pkd1l2a pkd1l2,LOC108413304 coding downstream 785987 4019927 ~ 4039717 (+)
G175287 NA non-coding upstream 7308 3219008 ~ 3219340 (+)
G175284 NA non-coding upstream 13737 3212495 ~ 3212911 (+)
G175256 NA non-coding upstream 28128 3164243 ~ 3198520 (+)
G175263 LOC108271072,LOC108433040 non-coding upstream 46094 3178782 ~ 3180554 (+)
G175241 NA non-coding upstream 89484 3135052 ~ 3137164 (+)
G175291 LOC108271305 non-coding downstream 3944 3237884 ~ 3238214 (+)
G175370 NA non-coding downstream 152250 3386190 ~ 3386375 (+)
LOC117598422 NA non-coding downstream 198389 3432329 ~ 3434701 (+)
G175389 NA non-coding downstream 214002 3447942 ~ 3452820 (+)
G175493 NA non-coding downstream 346038 3579978 ~ 3581939 (+)
G174546 NA other upstream 1148021 2078077 ~ 2078627 (+)
G174536 NA other upstream 1166365 2058970 ~ 2060283 (+)
G173898 NA other upstream 1861717 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 2403925 790374 ~ 822723 (+)
G173819 NA other upstream 2483938 742021 ~ 742710 (+)
pth1b NA other downstream 411803 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 413415 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 1047304 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 1379466 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 1422665 4656605 ~ 4661136 (+)

Expression


Co-expression Network