rgmd (LOC108271392,LOC107576053)


Basic Information

Item Value
gene id rgmd
gene name LOC108271392,LOC107576053
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16322156 ~ 16328589 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930811.2
AATGCTCTCAGTGCTactggggagagagagagagagagagagagagagagatgtgctgTGAGAGTTGTTGTGTTTCTCCGCAGCGTCGATGAGCAGCAGAAGTTGGTGATCTCCATTCTAACTGAATGGATTGGCATGGGGAGAAGCGGAACTCTCAACTCGGCTAAGCTGCAGCTTTTTAACCGGATTTCGCTTGTCATGGTTTCTCTGTCCCTCTTACTTCAGCCAGCTTGTTGTCAATCATGTCGGATCCAGCGCTGTAATGCGGAGTACGTGGCATCGTTCTCACCCGCCGCCGGTCTTCAGGAGGACGTGGTTTCTGATGTGGACTACTGCACGGCTCTGAGGGCATACTCCTTGTGCACCAGGCGAACGGCCCGCGGCTGCAGAGGGGACCTCGTTTACCACTCAGCCGTGTTCCGAATCAAGGAGCTCTTCGCTCAGCACAACTGCTCCAGTGAGGGTCCCACGTCTTCAATCAAAGCCCCAAGCACATCCAGGCCCACCGCAGTGGACACGTGCGACTTTGAGAGCAGAGCGCTGGCTTTGGGTCCAGCGGCTGCACAGAAGAAAAAGTATGCACACTGTGGACTATTTGGTGACCCTCACTTGCGCACTTTCAAAGATGAGTTTCAGACGTGCAGGGTGGAGGGTGCGTGGCCGCTCATCCACAATCGCTACCTCTCCGTTCAGGTCACGAATGTGCCTGTTGTGGAGGGATCAAGTGCCACAGCAACCAACAAGATAACGGTCATATTCAAAGCGTACCGTGACTGCACCGAGCAGAAAGTGTACCAGGCCACCACGGATGACGTACCGTCTGCCTTCCAGGACGGCACACGCAGCGGGGGCCATGCAGGCAGCCTGCGCATAACCGAGGGCAGCGGACACGGCGGCGTGCGCCAGGTCACCATCAACGCCCGCTACCTGGGCACATCCATCATTGTGCGGCGGGTTGGCCGCTACCTCACCTTCGCCATCCGCGTTCCCGAAGAGATGGTGGAGGAGAGCGGCGGCTTACAGCTCTGCCTGCACGGCTGCCCACGCAGCGAGCTCATCAATGCTCACGTGCTGAGCCGAGGACAGCGGCAGGAGGAGAGCGATGGACAGCTGCAGACGGGCAGCATGGGTCACGCCGACCTGCTTGAGCGTGCCACCTCCAGATGCAGGGAGACGCTGCAGGTCGAAGACGTTTACTTCCAGTCATGCGTCTTCGACGTCCTCACCACCGGAGATGTGCAGTTCTCTATGGCAGCGTTCGCAGCGCTGCAGGACCTGAAGGCTCTTCCTCCCAGCACGCTGGAGCAGAGCGCAGTCAGGACTCCACACGTTTCTAACAGAACGAGAAAGAGCTCTCCATCAATCCTCGTCATCACTCTGCTCCTTTTGCTCATCCTGCTGAAGAGGCCGGGCTAGCAGAGACACAAGGGGAAGAACGGATTTGACTGAACTTCTGTTTTAAAGCTCTTTTCATCATCTTTATTGAATTGGTCAGAAGCACTCAAATCATCTTTCCTCACACTAGCACATTAAACCCAAAAGTGCAAGACAACAGTCATTCAAACTCACATTACTTTCCGTAATGGAATTATGTCACGATACATCTCGGTACCTTGAAGAAGGCAGTACGGTCTGTGAAGGCTGAGGGCAGCTATTCGAATCTAATTAGCTTGGACATTATGTGTGACAACACCAACAATGCTTAGTCACGATCCTGGAGGATATTCACAGAATATAGAGGCATCGTGGACATGGCTCTGGGACTGGTAGATAACGACGTCTCTTGGCTTGAACATGGCACTTAATGCTACTCCTttgtaataaatgcattaacaaCATGGGATCCAACAACTAAATGAAAATGCTACCTATCAATATAGTTCTACAGGTACAGTATAAAACACTAGGTACAAAAAAGGCTACAGGTACAGCATAAAACAGTAAGTCCCCGAGCCACTCTGCTTCCCGCATTACTGTTTATGGCTAAGAAACAAAttctttatataataatatattgaaagtgtgtatatatgtgtgtataatgtgtacaTTCTCCTGTGTATAGATGATtgtaaatgtgatgtttttgcaGCTGtttttcttagatttttttttttttttctaaaactgtCAGAAGTAACTAATATGTAACCCCTGGTCTTTTCCATATTAAAATAAGTTGTCACACTA

Function

NR:

description
PREDICTED: RGM domain family member B-like

GO: NA

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930811.2 True 2190 mRNA 0.51 3 16322156 16328589

Neighbor

gene id symbol gene type direction distance location
hsd11b1la hsd11b1l coding upstream 36876 16279979 ~ 16285280 (+)
LOC113533225 NA coding upstream 46953 16272968 ~ 16275203 (+)
LOC113538695 NA coding upstream 72965 16247727 ~ 16249191 (+)
LOC113538485 LOC100304649 coding upstream 88319 16211346 ~ 16233837 (+)
fgf22 fgf22,LOC106613753,LOC107569930,LOC107655219,LOC107719646,LOC107687712 coding upstream 114336 16179542 ~ 16207820 (+)
LOC113544157 LOC108271000,LOC108435918,LOC107096963,LOC108239462,LOC107724979,LOC102796634,LOC107552698,LOC105011544 coding downstream 248945 16577534 ~ 16582783 (+)
LOC113537281 NA coding downstream 251647 16580236 ~ 16580303 (+)
hmg20b hmg20b,LOC107586380,LOC107719660,LOC107655186,LOC107729671 coding downstream 269371 16597960 ~ 16602762 (+)
unc13a LOC108270949,LOC108430111 coding downstream 277537 16606126 ~ 16650115 (+)
chaf1a chaf1a coding downstream 445869 16774458 ~ 16786199 (+)
G182483 NA non-coding upstream 61840 16260058 ~ 16260316 (+)
G182190 NA non-coding upstream 312921 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 331746 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 334175 15938100 ~ 15987981 (+)
G182167 NA non-coding upstream 428629 15893292 ~ 15893527 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding downstream 380036 16708625 ~ 16725527 (+)
LOC117598387 NA non-coding downstream 523819 16852408 ~ 16857137 (+)
G182906 NA non-coding downstream 632070 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 660730 16989319 ~ 16989519 (+)
G182932 NA non-coding downstream 751048 17079637 ~ 17083529 (+)
LOC113532318 NA other upstream 65374 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 648174 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 1610429 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 1672471 14622543 ~ 14649685 (+)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 other upstream 1722177 14589880 ~ 14599979 (+)
G182819 NA other downstream 254714 16583303 ~ 16584943 (+)
G182877 NA other downstream 584669 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 793310 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 867691 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 1037109 17365698 ~ 17411425 (+)

Expression


Co-expression Network