rasl12 (rasl12,LOC107600716,LOC107737003,LOC107685213)


Basic Information

Item Value
gene id rasl12
gene name rasl12,LOC107600716,LOC107737003,LOC107685213
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8522608 ~ 8529443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930815.2
GCAGGCAGACTCCAGCCTACACACACCAGTGCAGCTGAACTTTTAAGTGCTGTCGTTCTCAGACTCTCCAGCTCTCAGCCTTGCCAAATATGATTCATTTCAACAACAAGTCTTTTCCAACTAAATCTACACACCTCGAAGGAACGCTGAGTTTTGGATTTGCTTGTTATTAAGAAATGTCACCCACTGGAAAAGCATAAGAGGATGCAGCTGTTTTTCCAGAGAAGTGTATCAGAAGATCCTAAGGAGATCATCCAGGAGAAGCTGTCACGGAGCTGAGAGAGCATGTAGGCTATCATTTTTAGAAAGAATCAAGGCTTTTTCCAATGCATTATTGCTGTCCTGCTCGGGATGTCTATCATGTTTGGGAAAGCAAGGACGTGCAACATTGTTCCTGAACACGAACCTGCagagtgcagtatagtagttCTGGGAGCAATAGGCTCAGGCAAATCAGCTCTCACGGTGAAGTTCCTCACGAAGCGTTTTATTAGTGAATACGACCCAAACCTCGAGGACACTTATTCATCAGAGGAAATAGTGGACCAGCAACCTGTTCTGGTCAAAGTAATGGACACGGCAGACCAGgatgGACCGGTGAACTGTGATCGCTACTTGGCCTGGGCCAGTGCATTTCTCATCGTCTACAGCATTGATAACAGACTCAGTTTCGAAGTGTGTCAACAGTATGTGGAGGCTGTGACACTGTACACTAAAGGCCTGCAGCCTGAGGCTCCCATCATTTTAGTGGGCAACAAAGTGGACATGGAGAGATACAGACAAGTGAACAAGGCGGATGGTGCAGCCCTGGCTGCTCGATTCGGCTGCCTGTTTTTTGAGGTGTCTGCTTGCCTGGACTTTGTGTCTGTGCAAAACGTCTTCTATGAAGCAGTCCGGGAGGTTAGGCGTGAGGCAGAGAGGAGTCTTTCGCTCCGGCCTCTTTACATCAGTGAAGACAAAGCACCAATCAGCCTCTCCTCTGCCTCGCTTCTGTCACCCTGCTATAAGGAGCTGCCCACTCCGGCCACAGCCAAGCTAGTGACTGTGAAGTCCTCGAGGGCCCAGAGCAAGCGCAGAGCACCCACACTCACCCTCCTCAAAGGCTTCAAGATCTTTTGACTCAACACTGCCCCCTTATGGTGCTGGAAGATACAGTCAGACTCAAGGATGCTTGTTAGACATTGGCCTGCTGATGACGGGCCATGAGGAAAACTTGGGAGCGCATAACTTTTTGGTCACGTGTGGAGTGAGACTATGAAAACTCTCACTCAAACTACATTAGTGTcacttctaaaaaaaatgttcacgACTGGTTTGTTTAGCTGTTTCCTGTATATGCAAAGTAGTTTGATTGCATTAGCTTAGTAAAAGTGCGTTATTCAGCACATTAGGGATAATTAATGTTAAATCACTGTTAGTACTTTGGACTGAGGAAGAAATTACCTAtgttaaatgcaatattttatatcaCAGATATAACCAATGATAAAATCCATGtgcctgaaataataaaatccaaaagCAGGATATTGTATGCATCAGGTCAGATTTAATAATTAGATCGTTATGTTCCACTTACCCCAAATATAGTCAATTACctaagacatgtttggtgtgtaatgtttgcttctttagtttacACTGGACTTGCAAGGGTCATGTACCTAGCAAGTAATGATAGTCTATCTCCCCCGAAATGTTTTCCATAATACATACCCAAATGCTCTTGTACTTACTTTTAAATTACATTGTTAAGCTACAGATACCCCCCTCCCCccgcccaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatttctttttttttgtaaaatagcagGGATAATCtatatttacacttttctgTGTTCAGAGTGGAACTATATTATCATCAGCATAATGTCCAGCTTTCCAGTATAATTTTGACTTCTCAGTTTAAAAGGAATCAAAGAAGTATGCTGTGAGACAAGACAACCAAGCTGCCAGTGTGTTAGCTAAGTAAAACTGAGAAGGACTGatcccagttcaatcctgagcttgggttcctctctgtgtggagtttcatatgtcctccccatgtctgtgtgggtttcctctgataTGAGGCAGTAGGTGAagtggtgactctaaattgcctctaagtgtgagtctgtgtgtgcatggtgccctatgGTGGAccggtgtcccatccagggtgtattcacGCCTCACGCCCAGGGTTCCCAGCACAGACTCTAGATCCACCACGACCATGACCTGACCtgacagttactgaagatgaataaatgaatgaaagtatgaataaatgaatgaaaagttgGCTGTTGCATAATATTACAGTGTTAAGGCATATGGTgtaattttcttcatttatgtAGATTGTTGTAAGACATTATTGAAGAACTGGATGTGTGTTAAGATAGGTATTCCCAATGTGTGAGtatatatttatggaaaataattacatttagcTCTGAATGccccaaatttaaaaaaaaaaaaaaaaaaaaaaacactctgaacAGATCTTGGATGATCGCCTACATCAAGTTTTTAATGTAACTTTTGGTAACCATCTAATGCCTAgagaagctgcattttatttgcacacaaggtgtataaacatattttcctCATTACAACCTGAAGATCAACAATCCCCTTATGGCAGATGGATCAGATGCAAGAACACCTCTGTATATGTGAGTTAATTAAATATGACTCAAacttgt

Function

symbol description
rasl12 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adaxial cell and blood vasculature. Orthologous to human RASL12 (RAS like family 12).

NR:

description
PREDICTED: ras-like protein family member 12

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07854 RASL12, RIS; Ras-like protein family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930815.2 True 2764 mRNA 0.43 5 8522608 8529443

Neighbor

gene id symbol gene type direction distance location
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding downstream 14278 8491252 ~ 8508330 (-)
LOC113536763 LOC108270703 coding downstream 53176 8453004 ~ 8469432 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding downstream 71356 8373495 ~ 8451252 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding downstream 155621 8330088 ~ 8366987 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding downstream 210114 8307279 ~ 8312494 (-)
ubap1lb ubap1l coding upstream 5525 8534968 ~ 8543975 (-)
pdcd7 pdcd7 coding upstream 15499 8544942 ~ 8549611 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 20925 8550368 ~ 8564908 (-)
ankdd1a ankdd1a coding upstream 43032 8572475 ~ 8589352 (-)
plekho2 plekho2 coding upstream 66737 8596180 ~ 8612306 (-)
G178208 NA non-coding downstream 523 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 198444 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 247248 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 595550 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 767590 7707511 ~ 7755018 (-)
G178227 NA non-coding upstream 63743 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 181734 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 474201 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 657628 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 668157 9197600 ~ 9197805 (-)
trnar-acg_8 NA other downstream 274846 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 275833 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 277887 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 758178 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 933793 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 453739 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 791523 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 858048 9387491 ~ 9407218 (-)
G178942 NA other upstream 992973 9522416 ~ 9523330 (-)
G179035 NA other upstream 1284449 9813892 ~ 9815225 (-)

Expression


Co-expression Network