csnk2a2a (csnk2a2a,LOC108412781,LOC108270938,LOC107730160,LOC107663022,LOC107712622)


Basic Information

Item Value
gene id csnk2a2a
gene name csnk2a2a,LOC108412781,LOC108270938,LOC107730160,LOC107663022,LOC107712622
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5399124 ~ 5407447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930821.2
AGCTTTGGCCAAATACCCAATGGCTCACTATTTCCTACACAAGTGCACTAAATATGGTGAGAAATCTGGGCTTGTGCACCCTACGCAGTGCACTATATATCCACTAGGAAGTCGTTTGGGATTCGGTATCCGATTCTGCGGTTTGAAACAGAAGGGGCGTGAGTGAGCTAGCTAAGCAGTGCAGGGGATCTCTCCACCCCCTCGGCGGAACATTTGGGAACATCTCAAGACTTTATcgttattagtattattattactattttcatTTTCCTAATAGCCGTGTATTCAATGCGTAGCTGGTAACCGGAGTCCAAAAAACTAGACATTTTGGATATAACCGGTTTGAATCTAAACGTTAAAAGAGTCGCGAGACGTCGCTGACGAATCGAGctagtttgttagctagctagctatttatccGTGTGTGTTATTGGATTCCCTAATGTTAGCTTAGCTTGTCACGGTTaccataattataataataatgtgaattaaaaaatatctatTTACGCGctgttatttaaagaaatatcaGACTCGTCTAGAttgtaacattatttatttattttttgttttaattaattcgTCTTAGCTAGCAATAATAGCTAAGTGGTAGTCAGCCTTAACGTTAATTTTACGTGGTTAGGTTTTTTGCTCAGTAACGAGAACAGTAagtgtaattaattttttattaattcagcaTCATAGTTTGAGAAGATAAGCTTATAACCGTTTGTAATGGTTTAAAGCAAGACTAGCTAGTAATTAGATGCGTAGCAAGCTGTGTGCTAAGCTGACTAGCGAGCTTGACAGGTGACATGTTCATGCATATGCGTGTTGCTTAGCGATCCAGCTATTAATCACGCAGCACTAAATCGCATCTCTACGCAGCCAGCTATGCGAAATCTTGGCGAAATTCTTCCTAACCAGCGTTACTAAGCTGGCGCTGTGTCAGAAAGCGTGCAGGCTGCTTTCCGGCACATTCGGACACTCCTTATCGGGCTTGAACAGGAGGTCATGGTCCTCGCTGCATTGCGGCCCTGTTTCACCGGAGAGATCAGTCGCACATTGCTACAGTGAACCAGGCCGTTACCAGAGCTGCGAGAAGACAAGGCCGGCTTTGCGCTGTCGTGTTGGGAGTGCTGTGGTCGGTGGGGAAAAGGCAGGTCCATCATCGCCCATGCCCGCCATGCCTGGTCCGGCGGCCAGCAAAGCGCGGGTGTACGCTGATGTGAACACTCTGAAGAGCAAGGATTACTGGGACTATGAAGCACACGTGCCTAGCTGGAGCAACCAAGATGATTACCAGTTGGTCCGGAAGCTTGGAAGAGGCAAATATAGCGAAGTGTTCGAAGCCATCAACATCAACAGCAATGACAGAGTGGTGGTGAAAATACTCAAGCCagtcaagaagaagaagattaagCGTGAGATCAAAATCCTGGAAAACTTAAGAGGAGGAACCAACATAATTCGCCTTGTGGATACAGTCAAGGATCCTGTGTCCAGAACACCAGCTCTTGTCTTTGAGTGCATCAATAACACAGATTTCaaggATCTCTATCAGAGATTAACAGATTTTGATATTCGTTTCTACTTGTATGAACTTCTAAAGGCTCTGAATTACTCTCACAGCATGGGAATCATGCATCGGGATGTAAAGCCACATAACGTGATGATAGATCACCAAATGAGAAAGctgcgCCTGATAGACTGGGGTCTTGCCGAGTTCTATCATCCTGCACAAGAATATAATGTAAGGGTGGCTTCGAGATCATACAAGGGACCAGAGCTGCTGGTTGATTATCAGATGTATGATTACAGTTTAGATATGTGGAGCCTGGGCTGCATGCTGGCCAGTATGATTTTTCAGAAAGAGCCCTTTTTCCATGGCCAGGACAATTATGACCAGCTTGTTCGTATTGCTAAGGTCCTCGGGACGGAAGAGCTTTACAGCTACCTTAATAAGTATCACATTGAACTGGACACACGTTTCAAAGACCTGCTCGGACAGCAAACGCGAAAGCGCTGGGAGCACTTTGTTCAGCCGGAGAATCAGCACTTGGTGAGCCCCGAAGCTCTGGACTTGCTGGATAAGCTGCTGCGTTATGACCATCAACAGAGACTGACTGCCCAGGAGGCCATGGAACACCCCTACTTCTATCCTGTGCTGAAGGGACAGTCTCTCTCAAACTCAGATGGCACCCTGGCAATAAGCAGTTCGACTGCAACATGATGAGCTAAAACTAAAAGgAAAACCTTTTTACCTCAGTGTTTGGCAGAGACCCTGCGTTTCAGGTGTAAAGCTTCACTCTACTGAAGCAAGAAGTAATTTAGTATCACAAGACATGTACAGAAAACTGAAACACACCGGGCTGGCCGACTCCCTCTCCTTTATTCACTTTGTATTAGTGCTGCTTGCCACAGTTACTTAGATACCAAAAAGTGGTATTCTGTATGTCCCCTTCTTTCCTCTTTTAAGTTAAacatctctaaaaaaaaaaaaaaaaattaaattacagaatTATAAGTGATTATATATTGTGGTTGGGAAAGAATGCCTGCTCTTTCCCTGTGACTCTCAGGCTCTACAAGACTGCTGTGGGCTCAGGATCCAGGTTGCATTGTATGCTGGAAAGATTGTCATGGTCAGTTAATTTGCCCTGCTGAAATGAGTGCAAATTCTAaattatagtattattattattattgggtaTGGAGGCTTTTCTGCGATCTGTTGAAAATATGATATATTAAATAAGAGATACTTTTTAACCAGTCTGACATGTGGGTGTGTATTTTTAACTTTGGATAAATAATGACAGCTGTGCTACTATTGAGAGACTGGATCACTTATGGGACCTAATTTAAGCCTAGCCATGAGCATGATGTAGGCCAGCGAACTAAATTAAGCCCAATTAATCTAAATATGATACGGACACTTAGGAtcgtgctgttattgaaaagtAATCAAttatggggtggtgtgatgcaggccaacacgaagtggaattactgttactgctgcaAAGTTTTTCCCCTCTAACAGCACTTTggttttaaagtgttttattcttcttataccaccattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttctgagATGAATTTTAGCCAGATGTTCAACAACTGTACACAGTCTCTTTATGTCgaaaatacatttgaaaactAAAATCTGGAAACCAGCTCCTAATACaaatgagtgcaaaagtttgcatctctcttgaccaaaaaaagaaatgtagtgtatcgaaaaataaaaatggatttca

Function

symbol description
csnk2a2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation; peptidyl-threonine phosphorylation; and regulation of chromosome separation. Predicted to act upstream of or within protein phosphorylation. Predicted to be part of protein kinase CK2 complex. Predicted to be active in cytosol and nucleus. Orthologous to human CSNK2A2 (casein kinase 2 alpha 2).

NR:

description
PREDICTED: casein kinase II subunit alpha'-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930821.2 True 3301 mRNA 0.42 12 5399124 5407447

Neighbor

gene id symbol gene type direction distance location
LOC113536403 LOC108270935,LOC108412779,LOC103045764,LOC100149007,LOC107686837,LOC107600349,LOC107712618,LOC107730114 coding upstream 223 5394017 ~ 5398901 (+)
si:ch211-146m13.3 si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612 coding upstream 10545 5379911 ~ 5388579 (+)
LOC113536448 psmd13,LOC108270933,LOC108412783 coding upstream 21233 5366861 ~ 5377891 (+)
drd4b drd4b,LOC108270559,LOC108412785 coding upstream 43834 5314467 ~ 5355290 (+)
rxfp3.3a2 LOC108270660 coding upstream 88965 5308021 ~ 5310159 (+)
sult5a1 st2b1 coding downstream 81568 5489015 ~ 5496453 (+)
LOC113536777 LOC108270592,LOC103040452,LOC108435886 coding downstream 114801 5522248 ~ 5524430 (+)
LOC117598428 LOC108270908 coding downstream 141984 5549431 ~ 5562727 (+)
gemin6 gemin6 coding downstream 300942 5708389 ~ 5710341 (+)
rfc4 rfc4 coding downstream 356360 5763807 ~ 5772916 (+)
G176056 myo9a non-coding upstream 438598 4912078 ~ 4960526 (+)
G176041 NA non-coding upstream 505767 4893142 ~ 4893357 (+)
G175999 NA non-coding upstream 538181 4787742 ~ 4860943 (+)
G176008 NA non-coding upstream 560753 4813512 ~ 4838371 (+)
G175991 NA non-coding upstream 659458 4737251 ~ 4739666 (+)
G176384 NA non-coding downstream 13440 5420887 ~ 5424095 (+)
G176401 NA non-coding downstream 64365 5471812 ~ 5568100 (+)
G176406 LOC108270509 non-coding downstream 98323 5505770 ~ 5509854 (+)
G176430 NA non-coding downstream 195209 5602656 ~ 5614328 (+)
G176469 NA non-coding downstream 269759 5677206 ~ 5690860 (+)
G175977 pacsin3 other upstream 737988 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 753926 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1099757 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 1740834 3647355 ~ 3658290 (+)
pth1b NA other upstream 1752009 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1714938 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1860384 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2835908 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2837505 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2840569 8248016 ~ 8248088 (+)

Expression


Co-expression Network