s1pr1 (s1pr1,LOC107715096,LOC107592715)


Basic Information

Item Value
gene id s1pr1
gene name s1pr1,LOC107715096,LOC107592715
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12716584 ~ 12720429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930823.2
GGAGCCTGAGCTGGGTGGGCCGAGCTCCACGACAAGCTCGCGCTCAGCAGAGCAGCATTCATACAGCGCGAGAGACGGAGACTGGGTTTCACTCGCAGTGCAGCCTTTTCCACGATGCCTTTCTTGGATTTGCATACTCCATTCCCAGTAATCCATGCTAAGGATTTTTACCTGACTTAAGGGACACTTCATGACATTACATCATAAGAAATTTGGATACTGACGTACACTGGTACTCCAGAGCCCCTTAGTGGACTAAAGGGTGGATTGCACGGGTGGTAGACAGTCCAGCCAGAGACCAGGACCATGGCTGACTCGGTGTACTCGCACCTCATAGCAATGCACTACAACTTCACTGGGAAATTCCGTAAAGTAGAAAAGGATCCTGGACTCAAGGCCGATTCTGTCGTGTTTATCATTGTGTGCTGCTTCATCATTCTAGAGAACGTGCTGGTTCTTCTCACCATTTGGCGGACCAAAAAGTTCCACAAGCCCATGTACTATTTTATTGGGAACTTGGCTCTATCGGACTTGCTGGCTGGAGTGGCATATACGGCCAACATCCTACTCTCAGGAGCTAATACGTATAAACTGAGTCCCACGCAGTGGTTCTTCCGGGAGGGCAGCATGTTTGTAGCGCTGGCTGCCTCTGTCTTCAGCCTCTTGGCCATTGCAATCGAGCGCCACCTTACTATGCTCAAAATGAAGCTCCACAACAGTGGAAACACGTGCCGTGTCTTCATGCTGATCAGCACAGTGTGGTTCATTGCTGCCATCCTGGGTGGCTTGCCCGTCATGGGCTGGAACTGCATCCACAGCATGAAGAATTGCTCGACAGTGCTGCCACTCTACCACAAGACCTACATCCTCTTCTGCACCACCGTGTTCAGCGTGATCCTCATGGCCATTGTGGTGCTGTACGCCCGGATCTACACACTGGTTCGCACACGTAGCCGCAAACTCGTCTTCCGAAAGGTCTCAAACGGCCGCGGGAGCGGGAACAAGAGCTCGGAAAAGTCCATGGCCCTGCTGAAGACGGTCATCATTGTCCTGAGCTGCTTCATCGCCTGCTGGGCGCCGCTCTTCATCCTGCTCCTGCTGGATGTAGCCTGCGAGATCCGTACCTGTCCCATCCTCTACAAAGCTGAGTGGTTCCTCGCTTTGGCTGTGATGAACTCAGCAATGAACCctctcatctacacactcaccaGCAACGAGATGCGCAGGGCCTTCCTCAAGATGCTGCTGTGCAGCGTGTGCACTCAGCCCACTGGCAAGTTCTCCAGACCCATCATTGGGGCAGAGTTCAGCCGGAGCAAATCAGACAATTCATCGCATCCCAACAAGGAAGAGCCTGAGTACTCACCCCGGGAAACGGTCGTGTCCTCAGGAAACGTTGCATCCTCATCATAAAAGGGACTGTGGACATTTTCCTGCCTTTTCTTATTTAGTGAATGTATGCGTATGTGTGGAGATCCCACTGGACACGTAAACAAGAAAGTTTGTCCAGTCCACACCGCTTTTGTTTCGTAAGTGAGAATAGAGCTTCATTTTTATCTAACTAACACCCACGTGTACAACAGTGTTAACGGATCATGGAGACAGACAGTCAAAGATCTAATGTCGGGCCAggacacagtgagacagtgaaCAAACAACATGTTTGGGGTCATTTTTGTTCCTCAGCTGGTTCCTCATCCACATGCTGCACAATCATAAGATTGTGCTGTAGATTTTCAATTTAATTATGGTTCACAACATGGACAAAGTTTGAGCGTCCATGAGTGGATCTGAGTGGACCGAGTCTTTATGCACTTGTCTGATTCACAGGTCTCCTGGAGCTGTGTGGATtgaaatggggggaaaaaatggaatcAAACGAGTCaagttactaaaaaaaaaactctagaaAAGCTTTTATGTGTAAATTGGAATTGtttatagtgtacagtgtgtttggATGGTTGTATTAACATTACAACATTACAACAGTTTCTAAGCCAATATTTCTTACCTGGTATGAAGGGCTTGACTGGGAGAAATAGACTGaaacaagaaaaacacttttttaccCTGAactgcaaaaatattaaataagtgcAAGACTCTTGAAGGTCACGGCAGCACTGAAATGTCTTCCTCCGATTACAAAATGCACTTAACAACCTGAGCTCTGTAAACCTGATTAATCAGTATTacccattgttttttttctttatcacaTGGAAACGTTCTAATTTGAGGAACGTTTAGGATAGCACTTCTTGTAAAAGTGCTCTTTGAGAGCCATCTTAGGCCTTTAACTGACTTGTTATAATGTATTAGCATATTGGCCTTGTTTTGTACCATTTCATGCCCTTAcaggaaaaaagtgtgatttttacacataattTTTGCACGTCACATATTCATATGAActtatataaacatgtaaagaaaaataacatgCAGTGGAAAAATTCACGCATCATATCTCGTGTTAAAGTTCtgaaaaacagtattttttttcctgtaagggcaaaaatcaaattaaagaaatgcagtaaaaaaaaaggtacttgTGTTTCTTTGACTTAACGCCATGAGAGTAGAGAGATTTCTACTACCCTGATTtagaatgtattttattttcataaatatgatCTCACCTTTCATCCAACAGCTGTAGAAATTCAGTTAGCATGTACAGTAGTTCACCAGTATTAATTTATCTTGAATAAACTCGTAACCTGGATGAGAGTTGAATTACAATGTGGTATTAATGCATCATGAATTTAAGGTATTTTTTTATACCACTCATAGTTTTTAGGGTTTATTGTGTTGTTGCTAGTTAATGCATGTGCACAAACTGCTTTGCATTTGCAGTCTAGCGTCATTCAGTGTGTAGAAATCAGAAATGAGGGTCTAGCATTACAAATGAGTCGTGCATTACAGACGGATGCTGGGAATGTGAATCTGATAAGAtccataatcatcatcatcttaaTCATCTTCCTACTTGTTAGAGACATCTGTACTGAAATACCGCAGAATATAGATATGGTTGCATCATTAGCAATAAGGATTCAGAGAAAAAGGATAGTCACAAGCCTGTTTTGTtcctgtggggtttttttggggtttttttgtttgtttgtttgtttgtttttggggtttttttgcaca

Function

symbol description
s1pr1 Enables lysophosphatidic acid receptor activity. Involved in G protein-coupled receptor signaling pathway. Acts upstream of or within several processes, including ameboidal-type cell migration; circulatory system development; and negative regulation of angiogenesis. Predicted to be intrinsic component of plasma membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; fin bud; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human S1PR1 (sphingosine-1-phosphate receptor 1).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04288 S1PR1, EDG1, CD363; sphingosine 1-phosphate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930823.2 True 3165 mRNA 0.44 2 12716584 12720429

Neighbor

gene id symbol gene type direction distance location
slc30a7 slc30a7,LOC107588064 coding upstream 50574 12645186 ~ 12666010 (+)
vcam1b vcam1 coding upstream 92636 12615074 ~ 12623948 (+)
LOC117598432 NA coding upstream 110779 12602331 ~ 12605805 (+)
LOC113536666 gpr88 coding upstream 126220 12587473 ~ 12590364 (+)
LOC117598419 gpr88 coding upstream 149983 12565218 ~ 12566601 (+)
zbtb37 zbtb37 coding downstream 2428 12722857 ~ 12732692 (+)
eps15l1a eps15l1 coding downstream 83885 12804314 ~ 12837848 (+)
mrpl54 mrpl54 coding downstream 226611 12947040 ~ 12948807 (+)
malt2 LOC108270956,LOC108414270 coding downstream 229969 12950398 ~ 12974799 (+)
safb safb2,LOC108424984,LOC107757477,LOC107653619 coding downstream 256089 12976518 ~ 12990417 (+)
G180268 NA non-coding upstream 34021 12654422 ~ 12682563 (+)
G180267 NA non-coding upstream 62369 12653796 ~ 12654215 (+)
G180246 NA non-coding upstream 218933 12496731 ~ 12497651 (+)
G180242 NA non-coding upstream 229840 12486506 ~ 12486744 (+)
G180205 NA non-coding upstream 293432 12422702 ~ 12423152 (+)
G180516 NA non-coding downstream 116439 12836868 ~ 12841282 (+)
G180534 NA non-coding downstream 130531 12850960 ~ 12851179 (+)
G180695 NA non-coding downstream 415708 13136137 ~ 13203148 (+)
G180738 NA non-coding downstream 481442 13201871 ~ 13285070 (+)
G180833 NA non-coding downstream 578851 13299280 ~ 13302297 (+)
LOC117598398 NA other upstream 114520 12573157 ~ 12602064 (+)
cdc14ab cdc14a other upstream 154803 12512888 ~ 12561781 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other upstream 382903 12328052 ~ 12333681 (+)
G180121 NA other upstream 660835 12054958 ~ 12055749 (+)
G179758 psmd1 other upstream 1285687 11428613 ~ 11430897 (+)
ankmy1 ankmy1 other downstream 375944 13096373 ~ 13111706 (+)
aqp12 LOC108271384,LOC108424976 other downstream 516048 13236477 ~ 13239637 (+)
trnag-gcc_9 NA other downstream 529941 13250370 ~ 13250441 (+)
trnag-gcc_10 NA other downstream 535628 13256057 ~ 13256124 (+)
trnag-gcc_11 NA other downstream 537579 13258008 ~ 13258076 (+)

Expression


Co-expression Network