LOC113536710


Basic Information

Item Value
gene id LOC113536710
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10527033 ~ 10530371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930826.2
TACACTGAGCCTAATCAAGTTGTTATCATGTGCCTCAGGATGAGCTCAAGCCCTGCCCACTCACCCACTGACTCCGGATCAGCGCCGAACTACAAACGAAGCAGGTCCTGTGGCACCTCCATTGACATTGACAGCAGAATAGAACAAGCAATGGATCTGGTGAAGACTCATATGCTGAGTGCAGTGCGAGAGGAAGTGGAACTTCtgagagagaaaattaaaaatcttaCTGAGAGAAACATGGAGCTGGAGAGAGAAAACCACCTGCTGAGATCCATGACCAAATACCAAACAGCACAGACCTCAGGTCAGATCACCAACCACCAAACAGCACTGATCTCAGGTCAGATCACCAACCACCAAACAGCACTGACCTCAGGTCAGATCACCAACCACCAAACAGCACTGAGCTTGGGTCAGatcaccaaacaccaaacagCACTGCCCTCAGGTCAGATCACCAACCACCAAACAGCATTGAGCTTGGGTCAGATCACCAAACACCAAACGGCACTGTTGTCAGATCAGATCACCAAACACCCAACAGCACTGACCTCAGATCAGatcaccaaacaccaaacagCACTGACCTCAGATCAGATCACCAAACACCCAACAGCACTGACCTCAGATCagatcatcaaacaccaaacagcATTGAGCTCAGATCAGATCACCAAACACCAAAGAGCACTGAGCTCATATCATCACTGCAGTCAGTATGGCATCACCATACCTGAGCAATCAGAaaatttcatcttcagtagTGTTGATTACCAGAACAGTGGGTGTTTTTCTGTGAACAAGCAACTGTATTTCAATGTAGCATTAAAGCGAGATGTCagatgtgtttagtgtttagtgtttagtccTAGCAGAGTGTGTCAATTTATGTAAAGTGCTAATCTTATACCCAAATCAGTAATTAGCCAGTTACCTTGTTACAAGGTTGTagtgttttctttaataatgaCTCTTATTTGTGGTACAGAGTCTGTATACACAAATTTTCACAATGAAAATTTAATTGTTAATGATATTTTGAAAACtaactttgtatttttataaaatgtaatatgtcATTTGTTTTGCACAaaagagttttgttttgttaatatattgtataagtatatattgtattaatatACTGTCGAGTTTTGTTAATATATTGTATGCATTACTATAAGTTACTGAGTCTGAGTTGTGTAGAATTGTAACGTATCtatgtaaaatctaaaatatatttattaccaCAGTAGAAAAAATACTGATTTTATGCTTGTTAAATGTCTTAAAACTCATTCACACTATTACTTTTTATCTTAAAGTTTTAAACCAGCACTTTCCttgaacattaataaataattaaaacacattatttcctgttatttatAGTATAATCTAATAGAACAGCAGAATAACTGCTAATTACAGTTCTAcagttctacacacacacacacacacacacacacatactgtatatatatacatatgtatatatatatatttttttttaacagaagagTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930826.2 True 1527 mRNA 0.37 3 10527033 10530371

Neighbor

gene id symbol gene type direction distance location
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 74262 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 275693 10114083 ~ 10251340 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 453723 10068517 ~ 10073310 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 662248 9837999 ~ 9864785 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding downstream 691073 9827948 ~ 9835960 (-)
rnf13 rnf13 coding upstream 14396 10544767 ~ 10555198 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 50322 10580693 ~ 10592964 (-)
LOC113536600 NA coding upstream 64301 10594672 ~ 10597238 (-)
nmur1a LOC108270657 coding upstream 92918 10623289 ~ 10635357 (-)
hykk.2 hykk coding upstream 108650 10639021 ~ 10644194 (-)
G179469 NA non-coding downstream 11832 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 15009 10511621 ~ 10512024 (-)
G179372 NA non-coding downstream 414791 10112028 ~ 10112242 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 752624 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 772654 9739531 ~ 9754379 (-)
G179478 NA non-coding upstream 31032 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 44165 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 48049 10578420 ~ 10579460 (-)
G179727 NA non-coding upstream 664066 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 1028548 11558919 ~ 11562343 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 3454 10486735 ~ 10523579 (-)
G179035 NA other downstream 711808 9813892 ~ 9815225 (-)
G178942 NA other downstream 1003703 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1119815 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1190847 9320966 ~ 9336186 (-)
LOC113536673 NA other upstream 75140 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 713476 11243847 ~ 11246310 (-)
G179803 ncl other upstream 878721 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 961336 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 980475 11510846 ~ 11518394 (-)

Expression


Co-expression Network