cfap410 (c10h21orf2,cunh21orf2,LOC107713232,LOC107564578)


Basic Information

Item Value
gene id cfap410
gene name c10h21orf2,cunh21orf2,LOC107713232,LOC107564578
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7248348 ~ 7252593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930841.2
AAGTGACTAGAAATATCACGCTGTACTAGTTGCCGTATTTTAAGCTATGAACGTGTATAAGATACGTGTATGAGATGTCAATGTAATTAAATTCAGTGAGCTTTATTGGCAGATTGTTAAAGGATTTACAGTATTACCAAAGTGTTACGAAATGTTATGAAATGTCTCCCTCTAGCGGTTTTATCTGGCATTGCAGTTGGGATTTCAGGCGCATGCGCAGTGTCGCTTGTTTGGCAGTAACGCTAAGTGAAGTGATGGATGGCTACAGAACAGGCCAGTTTGTCTTTGGGAtctgtacaataatatttgAGCTAATACGGTGCAACTCCAGAATGAAATTAACTCGGAAACTTGTTCTCTCACGGGCCAAAGCGTCGGACCTTGAAAGCGTAAAAAAGTTGAATTGCTGGGGCTGCAGCTTGACAGATATCTCAATATTCACTGAAATTCCCAATGTTGAAGTCTTAACATTAAGtgCCAATAATATCTCCTCTCTGGAGCACATCGCCAACTGTCAGCATCTGACCGAGCTCTACCTGAGGCGCAACGACATCCAGAGTCTCTCAGAGCTGAGCCATCTTAAAAACCTCACCTGTCTGAAAGTTCTGTGGCTGGCAGAGAACCCGTGCTGTGACGCAGACCCGGCGAAGTACCGCCTGACTGTGCTGAGGAACCTGCCTGGTCTGCAAAAACTAGACAACCAGGTTGTGACTGAAGAAGAGCTTGCACTTGCTTTGGAAGAAGGCGAGGAAGTGATCACTCCTCCAGGTCCTGCCACAGCCAGTTCTACCAATGGCCTCACAGAGGCAGACTCCGAGTACGACCCTCTCAATTACAGTATGGAGGAGACCAATAAAATCCATGCTCAGTTGGGGATGAAGCCATTGCCTAGAGATAAATTTTCATCTTCACGAGAAGCAGGGGCCTCCCTGAAGAAAAAGagtcaCACTCTGGAAGCTGTGCTGCTCCTGCTGAAGGACCTGGACACAGAAGAGCTGAAAACTGTTCAGTGTGCCACAGAGAACAAACTCAGAGCTCGCagtagacagaaagagaaaataccAATTGCTCAGCACTGAATAAGAGCTAATTACTACTGCATGCAGAATGACCAGCAACAGAAAATAGCTTTTTGATATAAAAGAATCCAGCTTGATATGTTTACAGACATTGTTGCCAGACTAAAAAACTCCCTGCTCTGTAACAAATACAAGACAGGTgacaaataaatggaaaaatcaa

Function

NR:

description
protein C21orf2

GO: NA

KEGG:

id description
K23456 CFAP410, C21ORF2; cilla- and flagella-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930841.2 True 1242 mRNA 0.45 7 7248348 7252593

Neighbor

gene id symbol gene type direction distance location
si:dkey-93h22.8 LOC108270890 coding downstream 45484 7192255 ~ 7202864 (-)
ogal LOC108270888,LOC108412751 coding downstream 57514 7180208 ~ 7190834 (-)
tk1 tk1,LOC107713239,LOC107726782 coding downstream 93639 7150679 ~ 7154709 (-)
tmc6b tmc6 coding downstream 140139 7079500 ~ 7108209 (-)
aspscr1 aspscr1 coding downstream 192424 7018805 ~ 7055924 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding upstream 44114 7296707 ~ 7354330 (-)
irf2bp2b irf2bp2 coding upstream 181726 7434319 ~ 7437490 (-)
rbm34 rbm34 coding upstream 239908 7492501 ~ 7500900 (-)
nid1a nid1 coding upstream 262654 7515247 ~ 7547820 (-)
ero1b ero1b coding upstream 311787 7564380 ~ 7577840 (-)
LOC117598441 NA non-coding downstream 90727 7156228 ~ 7157621 (-)
G177404 NA non-coding downstream 109444 7137629 ~ 7138904 (-)
G177374 notum non-coding downstream 188798 7058532 ~ 7059550 (-)
G177097 NA non-coding downstream 509740 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 659052 6579004 ~ 6589296 (-)
G177448 NA non-coding upstream 14968 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 37292 7289885 ~ 7290092 (-)
G177459 NA non-coding upstream 40324 7292917 ~ 7293170 (-)
G177469 NA non-coding upstream 122434 7375027 ~ 7375235 (-)
G177491 NA non-coding upstream 161374 7413967 ~ 7414185 (-)
LOC113536608 LOC108270551 other downstream 387000 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1540044 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2051530 5139610 ~ 5196818 (-)
G176307 NA other downstream 2167453 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2744019 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 227829 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 327841 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 423323 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 992056 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 994110 8246703 ~ 8246775 (-)

Expression


Co-expression Network