mrpl46 (mrpl46)


Basic Information

Item Value
gene id mrpl46
gene name mrpl46
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8173261 ~ 8180651 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930844.2
AGCGTTGCATTGTGGGTACTTTCAAAAATGGCGGCGCCCTGTTGGAGGTATGCTTGGAGACCGTTATGGCAAATTACCTCAGGACCAGGGAGGTTAAAAGCTGCAGTGCGATATGTTTGTTCCAGCGCTCAGAAAGTCAAGACCGCAAGTCCACCGCCGCCCTGGGCTCTACACGGCGCCGTGTGCTTGCAGAGACTTCCGGTCATCTCTCAGGACCCGAGCCCGGTGGAGGAGAAGTTCATGGAGCTCATGCGCCAGATGGAGCTGGAGAGAAGCCTACTCTCGGACCACGAGCTGCGGCTGTTGGAGGACGCCGAGCGCATGAGCCGCAAACAGGATGCCGATTATGATTCGGATGATGAAGAGGGCTACGGAGGTCAAGAGATCGTCACAGCACAGGATCTGGAGGACACATGGGAACAGAAACTCAAGCTATTCCAACCTGCTCTGAGAATGAAAGCTTCTGACACCACAGATGTGAGCTCGGCTGAGCGCTGCCTGGGAGACAGCGTGGTGCTGCTGGTGAAGCAGGATGTTGGCTCTCAGAAGGTTTGGCTTCTGCCTCAGTTGCCGTGGGAGGCGGGAGAGACGCTGAGGCAGACCGCAGAGCGTGCCCTCGCCAGTCTGCCAGGCACAAAATTGAACGCAACCTTCCTTGGCAATGCCCCATGTGgattttacaaatacaaattccCCGAAAGCATCCAGACCGAGAACAGAATAGGAGCCAAGGTGTTTTTCTTCAAAGCCGTGCTCTCTGGTAGCGACAATCTGCCACTGGAGAAAGACACCTTCGCGTGGGTGAGAAAGGATGAGCTCCAGGATTATCTCAAGCCGGAATACCTGAAGCAGGTCAAgcgatttattttaaatctgtgaCATGCTGAGACACTGGACCCCATGTAGAAATGTCATACATATTTATGTAAGACGCTTGCTCTGACTCGGTGTAGTGGGATTGTCACAAATCAGATGCCTCGTCTGCTgatcagaaataaaatgttcattttttttgcagctcCATTTTCACGCTATAATCAGTTATGGCTCTGTGACCAAGCCTGACACACCTGACTAAATAAATCCAGATTTCCAGATGAGTTGATTAAATGAATCAGGTGTGATGGacagtgtgtgttggagtgaaGCGGGGGTCTTGATCTTGATTGAATTCTGTTCCAGTTCCATAACCACAGATGAAACAGAAGAATAACTTTTCACATTATACATGTATATTAAAGATAATAATCCGGTCTTTTCTAAAGTTCGAAATATGTTCACTTGTATTTCTTTGTCatgtattgaaaaataaattgaatgtCATCATTCTTTTATAGTAAAAAGCCACATGAAGTTGACTCTCAACCTTCAGTTGTTCTGTCCCGTTGACTCAGTCCatctttttagattttatagtgatatgttttatgtcatttttgtgtCACTGATcatcaatattaataatactgaTGGAAATAGAGCCCCTGTAACCTTTCCATGCTTGGGCGGTTCTCTTAATGCCAggtgtggatggatggaagtcATGTAATGCTGACTCAAATCAATTATCTCTTTGAaatttctttttgaaaaaaaaaaatttcacattgTTACTCTCAGCTCAAACCTTAAACATCATTTCTGTAATGCAAATGTGAATACTTAAATGATTTGTCATGTTAAACATGCTGGATGTCACTGTggttgaattctggaaaacagtaaaagaaaaaaaaaa

Function

symbol description
mrpl46 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL46 (mitochondrial ribosomal protein L46).

NR:

description
PREDICTED: 39S ribosomal protein L46, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17427 MRPL46; large subunit ribosomal protein L46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930844.2 True 1738 mRNA 0.45 4 8173261 8180651

Neighbor

gene id symbol gene type direction distance location
ntrk3b ntrk3,ntrk3b,LOC107733954 coding downstream 48476 7992004 ~ 8124785 (-)
sv2ba sv2ba,LOC108270522,LOC108428484,LOC107674753,LOC107568919 coding downstream 328234 7818236 ~ 7845027 (-)
mespba LOC108270618,LOC107714027,LOC107654092,LOC107581863,LOC107706936,LOC107568918 coding downstream 362582 7809390 ~ 7810679 (-)
mespaa mespbb,LOC108270617,LOC106024706 coding downstream 371709 7799665 ~ 7801552 (-)
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding downstream 501600 7659046 ~ 7671661 (-)
trnar-acg_4 NA coding upstream 61455 8242106 ~ 8242178 (-)
trnar-acg_5 NA coding upstream 62080 8242731 ~ 8242803 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding upstream 126628 8307279 ~ 8312494 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding upstream 149437 8330088 ~ 8366987 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding upstream 192844 8373495 ~ 8451252 (-)
G177807 NA non-coding downstream 246203 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 418243 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 422455 7728913 ~ 7750806 (-)
G177691 NA non-coding downstream 621511 7551522 ~ 7551750 (-)
G177682 NA non-coding downstream 664073 7508851 ~ 7509188 (-)
LOC113536653 NA non-coding upstream 90456 8271107 ~ 8275360 (-)
G178057 NA non-coding upstream 142968 8323619 ~ 8324164 (-)
G178208 NA non-coding upstream 341150 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 412535 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 530526 8711177 ~ 8712118 (-)
igf1rb LOC108271091 other downstream 408831 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 584446 7580434 ~ 7588815 (-)
si:dkey-56d12.4 LOC108270721 other downstream 689144 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 1311913 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 2464957 5696380 ~ 5708304 (-)
trnar-ucg_7 NA other upstream 63998 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 66052 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 67039 8247690 ~ 8247762 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 802531 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 1140315 9320966 ~ 9336186 (-)

Expression


Co-expression Network